RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 MT1HL1P0DM35 61 aa2.19□□□□□ -2.06
PRPF39-209ENST00000556353 LELP1Q5T871 98 aa2.19□□□□□ -2.06
PRPF39-209ENST00000556353 DMAC1Q96GE9 116 aa2.19□□□□□ -2.06
PRPF39-209ENST00000556353 PLAC8Q9NZF1 115 aa2.19□□□□□ -2.06
PRPF39-209ENST00000556353 CSAG1Q6PB30 78 aa2.18□□□□□ -2.06
PRPF39-209ENST00000556353 PRR15LQ9BU68 103 aa2.18□□□□□ -2.06
PRPF39-209ENST00000556353 LINC00846Q9NV44 126 aa2.18□□□□□ -2.06
PRPF39-209ENST00000556353 LINC01558Q9Y6Z2 57 aa2.18□□□□□ -2.06
PRPF39-209ENST00000556353 MUC17Q685J3 4493 aa2.17□□□□□ -2.06
PRPF39-209ENST00000556353 NREPQ16612 68 aa2.17□□□□□ -2.06
PRPF39-209ENST00000556353 ENHOQ6UWT2 76 aa2.17□□□□□ -2.06
PRPF39-209ENST00000556353 UBL5Q9BZL1 73 aa2.17□□□□□ -2.06
PRPF39-209ENST00000556353 A0A1B0GU33 70 aa2.16□□□□□ -2.06
PRPF39-209ENST00000556353 IGIPA6NJ69 53 aa2.16□□□□□ -2.06
PRPF39-209ENST00000556353 F8VRH5 84 aa2.16□□□□□ -2.06
PRPF39-209ENST00000556353 K7EMI3 77 aa2.16□□□□□ -2.06
PRPF39-209ENST00000556353 IGLV7-43P04211 117 aa2.16□□□□□ -2.06
PRPF39-209ENST00000556353 SPAG11BQ08648 103 aa2.16□□□□□ -2.06
PRPF39-209ENST00000556353 SPAG11AQ6PDA7 123 aa2.16□□□□□ -2.06
PRPF39-209ENST00000556353 KRTAP25-1Q3LHN0 102 aa2.15□□□□□ -2.07
PRPF39-209ENST00000556353 CLPSL2Q6UWE3 100 aa2.15□□□□□ -2.07
PRPF39-209ENST00000556353 DEFB104AQ8WTQ1 72 aa2.15□□□□□ -2.07
PRPF39-209ENST00000556353 ZCCHC13Q8WW36 166 aaKnown RBP2.15□□□□□ -2.07
PRPF39-209ENST00000556353 TMEM167BQ9NRX6 74 aa2.15□□□□□ -2.07
PRPF39-209ENST00000556353 CRCT1Q9UGL9 99 aa2.15□□□□□ -2.07
PRPF39-209ENST00000556353 JMJD7-PLA2G4BH0Y9G9 81 aa2.14□□□□□ -2.07
PRPF39-209ENST00000556353 COX7B2Q8TF08 81 aa2.14□□□□□ -2.07
PRPF39-209ENST00000556353 TRBV6-1A0A0K0K1D8 114 aa2.13□□□□□ -2.07
PRPF39-209ENST00000556353 I3L3M4 83 aa2.13□□□□□ -2.07
PRPF39-209ENST00000556353 RPL37AP61513 92 aaKnown RBP2.13□□□□□ -2.07
PRPF39-209ENST00000556353 SPACA4Q8TDM5 124 aa2.13□□□□□ -2.07
PRPF39-209ENST00000556353 LINC00208Q96KT6 92 aa2.13□□□□□ -2.07
PRPF39-209ENST00000556353 M0QY20 66 aa2.12□□□□□ -2.07
PRPF39-209ENST00000556353 UQCR11O14957 56 aa2.12□□□□□ -2.07
PRPF39-209ENST00000556353 PDE6GP18545 87 aa2.12□□□□□ -2.07
PRPF39-209ENST00000556353 C9orf163Q8N9P6 203 aa2.12□□□□□ -2.07
PRPF39-209ENST00000556353 ST20-AS1Q8NBB2 130 aa2.12□□□□□ -2.07
PRPF39-209ENST00000556353 HIGD2AQ9BW72 106 aa2.12□□□□□ -2.07
PRPF39-209ENST00000556353 H0Y9P7 68 aa2.11□□□□□ -2.07
PRPF39-209ENST00000556353 ANGP03950 147 aaKnown RBP2.11□□□□□ -2.07
PRPF39-209ENST00000556353 MGPP08493 103 aa2.11□□□□□ -2.07
PRPF39-209ENST00000556353 SPATA8Q6RVD6 105 aa2.11□□□□□ -2.07
PRPF39-209ENST00000556353 SPRR4Q96PI1 79 aa2.11□□□□□ -2.07
PRPF39-209ENST00000556353 A0A096LNI7 61 aa2.1□□□□□ -2.07
PRPF39-209ENST00000556353 H0YGX0 51 aa2.1□□□□□ -2.07
PRPF39-209ENST00000556353 RPL39LQ96EH5 51 aaKnown RBP2.1□□□□□ -2.07
PRPF39-209ENST00000556353 CNFNQ9BYD5 112 aa2.1□□□□□ -2.07
PRPF39-209ENST00000556353 PSORS1C2Q9UIG4 136 aa2.1□□□□□ -2.07
PRPF39-209ENST00000556353 GVQW2A0A096LPI5 108 aaPredicted RBP2.09□□□□□ -2.07
PRPF39-209ENST00000556353 COX6A2Q02221 97 aa2.09□□□□□ -2.07
PRPF39-209ENST00000556353 KRTAP6-3Q3LI67 103 aa2.09□□□□□ -2.07
PRPF39-209ENST00000556353 FSIP2Q5CZC0 6907 aa2.08□□□□□ -2.08
PRPF39-209ENST00000556353 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.08□□□□□ -2.08
PRPF39-209ENST00000556353 LOC110117498A0A087WWA1 95 aa2.08□□□□□ -2.08
PRPF39-209ENST00000556353 IGKV2-24A0A0C4DH68 120 aa2.08□□□□□ -2.08
PRPF39-209ENST00000556353 IGKV2-29A2NJV5 120 aaPredicted RBP2.08□□□□□ -2.08
PRPF39-209ENST00000556353 IGKV3OR2-268A0A0C4DH90 116 aa2.07□□□□□ -2.08
PRPF39-209ENST00000556353 SPINK7P58062 85 aa2.07□□□□□ -2.08
PRPF39-209ENST00000556353 ZNF625Q96I27 306 aaPredicted RBP2.07□□□□□ -2.08
PRPF39-209ENST00000556353 FLGP20930 4061 aaPredicted RBP2.06□□□□□ -2.08
PRPF39-209ENST00000556353 A0A1W2PNN7 141 aa2.06□□□□□ -2.08
PRPF39-209ENST00000556353 PRO2289Q9P1D8 64 aa2.06□□□□□ -2.08
PRPF39-209ENST00000556353 COX17Q14061 63 aa2.05□□□□□ -2.08
PRPF39-209ENST00000556353 KCNQ1DNQ9H478 68 aa2.05□□□□□ -2.08
PRPF39-209ENST00000556353 LINC00959A0A1B0GUT2 108 aa2.04□□□□□ -2.08
PRPF39-209ENST00000556353 POLR2KP53803 58 aaKnown RBP2.04□□□□□ -2.08
PRPF39-209ENST00000556353 SPINK6Q6UWN8 80 aa2.04□□□□□ -2.08
PRPF39-209ENST00000556353 ETDCA0A1B0GVM5 59 aa2.03□□□□□ -2.08
PRPF39-209ENST00000556353 RPL39P62891 51 aaKnown RBP2.03□□□□□ -2.08
PRPF39-209ENST00000556353 COA5Q86WW8 74 aa2.02□□□□□ -2.09
PRPF39-209ENST00000556353 C6orf48Q9UBA6 75 aa2.02□□□□□ -2.09
PRPF39-209ENST00000556353 SPINT4Q6UDR6 99 aa2.01□□□□□ -2.09
PRPF39-209ENST00000556353 SMIM2Q9BVW6 85 aa2.01□□□□□ -2.09
PRPF39-209ENST00000556353 KRTAP4-1Q9BYQ7 146 aa2.01□□□□□ -2.09
PRPF39-209ENST00000556353 LINC00472Q9H8W2 130 aa2.01□□□□□ -2.09
PRPF39-209ENST00000556353 UNQ6190/PRO20217Q6UXQ8 127 aa2□□□□□ -2.09
PRPF39-209ENST00000556353 R4GN34 69 aa2□□□□□ -2.09
PRPF39-209ENST00000556353 NCR3O14931 201 aa1.99□□□□□ -2.09
PRPF39-209ENST00000556353 COX7BP24311 80 aa1.98□□□□□ -2.09
PRPF39-209ENST00000556353 A0A0G2JQZ4 141 aa1.97□□□□□ -2.09
PRPF39-209ENST00000556353 NDUFA1O15239 70 aa1.97□□□□□ -2.09
PRPF39-209ENST00000556353 LINC00308Q8TCZ7 52 aa1.97□□□□□ -2.09
PRPF39-209ENST00000556353 Q96NJ1 140 aa1.97□□□□□ -2.09
PRPF39-209ENST00000556353 A0A1B0GU69 56 aa1.96□□□□□ -2.1
PRPF39-209ENST00000556353 SSPOA2VEC9 5147 aa1.95□□□□□ -2.1
PRPF39-209ENST00000556353 CDKN2A-AS1Q9UH64 79 aa1.95□□□□□ -2.1
PRPF39-209ENST00000556353 USH2AO75445 5202 aa1.95□□□□□ -2.1
PRPF39-209ENST00000556353 Q8IZM0 81 aa1.94□□□□□ -2.1
PRPF39-209ENST00000556353 TOMM7Q9P0U1 55 aa1.94□□□□□ -2.1
PRPF39-209ENST00000556353 IGLV6-57P01721 117 aa1.93□□□□□ -2.1
PRPF39-209ENST00000556353 PRLHP81277 87 aa1.93□□□□□ -2.1
PRPF39-209ENST00000556353 TPRXLQ17RH7 258 aa1.93□□□□□ -2.1
PRPF39-209ENST00000556353 INE1O15225 51 aa1.92□□□□□ -2.1
PRPF39-209ENST00000556353 HRES1P13985 223 aa1.92□□□□□ -2.1
PRPF39-209ENST00000556353 LINC00158P58513 81 aa1.92□□□□□ -2.1
PRPF39-209ENST00000556353 KRTAP19-2Q3LHN2 52 aa1.92□□□□□ -2.1
PRPF39-209ENST00000556353 ACYP2P14621 99 aa1.91□□□□□ -2.1
PRPF39-209ENST00000556353 SMIM11BQ8TCY0 68 aa1.91□□□□□ -2.1
PRPF39-209ENST00000556353 Q6ZQY7 126 aa1.9□□□□□ -2.11
PRPF39-209ENST00000556353 SYNE2Q8WXH0 6885 aaKnown RBP1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms