RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 PRCDQ00LT1 54 aa0.99□□□□□ -2.25
LIMA1-210ENST00000552045 COX6A2Q02221 97 aa0.99□□□□□ -2.25
LIMA1-210ENST00000552045 AMELXQ99217 191 aa0.99□□□□□ -2.25
LIMA1-210ENST00000552045 HIGD1BQ9P298 99 aa0.99□□□□□ -2.25
LIMA1-210ENST00000552045 UQCR10Q9UDW1 63 aa0.99□□□□□ -2.25
LIMA1-210ENST00000552045 NDUFC1O43677 76 aa0.98□□□□□ -2.25
LIMA1-210ENST00000552045 RPL39P5Q59GN2 51 aa0.98□□□□□ -2.25
LIMA1-210ENST00000552045 KRTAP8-1Q8IUC2 63 aa0.98□□□□□ -2.25
LIMA1-210ENST00000552045 SMIM4Q8WVI0 70 aa0.98□□□□□ -2.25
LIMA1-210ENST00000552045 LINC01558Q9Y6Z2 57 aa0.98□□□□□ -2.25
LIMA1-210ENST00000552045 F8VRH5 84 aa0.97□□□□□ -2.25
LIMA1-210ENST00000552045 COX6CP09669 75 aa0.97□□□□□ -2.25
LIMA1-210ENST00000552045 DEFB1P60022 68 aa0.97□□□□□ -2.25
LIMA1-210ENST00000552045 NXT2Q9NPJ8 142 aaKnown RBP0.97□□□□□ -2.25
LIMA1-210ENST00000552045 ARL2-SNX15V9GYD0 113 aa0.97□□□□□ -2.25
LIMA1-210ENST00000552045 S100A3P33764 101 aa0.96□□□□□ -2.26
LIMA1-210ENST00000552045 TMEM170BQ5T4T1 132 aa0.96□□□□□ -2.26
LIMA1-210ENST00000552045 S100A16Q96FQ6 103 aaKnown RBP0.96□□□□□ -2.26
LIMA1-210ENST00000552045 LINC00472Q9H8W2 130 aa0.96□□□□□ -2.26
LIMA1-210ENST00000552045 TRBV25-1A0A075B6N4 114 aa0.95□□□□□ -2.26
LIMA1-210ENST00000552045 A0A096LNI7 61 aa0.95□□□□□ -2.26
LIMA1-210ENST00000552045 M0R3E3 92 aa0.95□□□□□ -2.26
LIMA1-210ENST00000552045 PEA15Q15121 130 aa0.95□□□□□ -2.26
LIMA1-210ENST00000552045 KLK9Q2XQG4 91 aa0.95□□□□□ -2.26
LIMA1-210ENST00000552045 BAGE2Q86Y30 109 aa0.95□□□□□ -2.26
LIMA1-210ENST00000552045 TTTY10Q9BZA0 68 aa0.95□□□□□ -2.26
LIMA1-210ENST00000552045 ABRACLQ9P1F3 81 aa0.95□□□□□ -2.26
LIMA1-210ENST00000552045 UQCR11O14957 56 aa0.94□□□□□ -2.26
LIMA1-210ENST00000552045 PMCHL1Q16048 86 aa0.93□□□□□ -2.26
LIMA1-210ENST00000552045 PIGYQ3MUY2 71 aa0.93□□□□□ -2.26
LIMA1-210ENST00000552045 SSBP3-AS1Q7Z2R9 100 aa0.93□□□□□ -2.26
LIMA1-210ENST00000552045 SPRR4Q96PI1 79 aa0.93□□□□□ -2.26
LIMA1-210ENST00000552045 A0A087WWC5 75 aa0.92□□□□□ -2.26
LIMA1-210ENST00000552045 FXYD6-FXYD2A0A087WZ82 144 aa0.92□□□□□ -2.26
LIMA1-210ENST00000552045 ZNF815PA8K554 130 aa0.92□□□□□ -2.26
LIMA1-210ENST00000552045 K7EIM0 57 aa0.92□□□□□ -2.26
LIMA1-210ENST00000552045 SPINK4O60575 86 aa0.92□□□□□ -2.26
LIMA1-210ENST00000552045 SFTA3P0C7M3 94 aa0.92□□□□□ -2.26
LIMA1-210ENST00000552045 SNRPGP62308 76 aaKnown RBP0.92□□□□□ -2.26
LIMA1-210ENST00000552045 ETDBQ3ZM63 59 aa0.92□□□□□ -2.26
LIMA1-210ENST00000552045 ALKAL2Q6UX46 152 aa0.92□□□□□ -2.26
LIMA1-210ENST00000552045 PSENENQ9NZ42 101 aa0.92□□□□□ -2.26
LIMA1-210ENST00000552045 C7orf77A4D0Y5 90 aa0.91□□□□□ -2.26
LIMA1-210ENST00000552045 A8MTW9 85 aa0.91□□□□□ -2.26
LIMA1-210ENST00000552045 F8WEM9 126 aa0.91□□□□□ -2.26
LIMA1-210ENST00000552045 COX17Q14061 63 aa0.91□□□□□ -2.26
LIMA1-210ENST00000552045 NMSQ5H8A3 153 aa0.91□□□□□ -2.26
LIMA1-210ENST00000552045 C9orf92A6NGG3 77 aa0.9□□□□□ -2.27
LIMA1-210ENST00000552045 BCE1O60756 84 aa0.9□□□□□ -2.27
LIMA1-210ENST00000552045 ENHOQ6UWT2 76 aa0.9□□□□□ -2.27
LIMA1-210ENST00000552045 S100A13Q99584 98 aa0.9□□□□□ -2.27
LIMA1-210ENST00000552045 SPCS1Q9Y6A9 102 aa0.9□□□□□ -2.27
LIMA1-210ENST00000552045 A0A087WVE0 104 aa0.89□□□□□ -2.27
LIMA1-210ENST00000552045 ARMS2P0C7Q2 107 aa0.89□□□□□ -2.27
LIMA1-210ENST00000552045 HMGN3Q15651 99 aa0.89□□□□□ -2.27
LIMA1-210ENST00000552045 I3L2K1 104 aa0.88□□□□□ -2.27
LIMA1-210ENST00000552045 SPINK1P00995 79 aa0.88□□□□□ -2.27
LIMA1-210ENST00000552045 MGPP08493 103 aa0.88□□□□□ -2.27
LIMA1-210ENST00000552045 WT1-ASQ06250 92 aa0.88□□□□□ -2.27
LIMA1-210ENST00000552045 CLPSL2Q6UWE3 100 aa0.88□□□□□ -2.27
LIMA1-210ENST00000552045 ST20Q9HBF5 79 aa0.88□□□□□ -2.27
LIMA1-210ENST00000552045 LINC01590Q5TEZ4 76 aa0.87□□□□□ -2.27
LIMA1-210ENST00000552045 ADIRFQ15847 76 aa0.86□□□□□ -2.27
LIMA1-210ENST00000552045 C10orf113Q5VZT2 155 aa0.86□□□□□ -2.27
LIMA1-210ENST00000552045 Q6JHZ5 121 aa0.86□□□□□ -2.27
LIMA1-210ENST00000552045 LEPROTL1O95214 131 aa0.85□□□□□ -2.27
LIMA1-210ENST00000552045 SMIM11AP58511 58 aa0.85□□□□□ -2.27
LIMA1-210ENST00000552045 KRTAP21-1Q3LI58 79 aa0.85□□□□□ -2.27
LIMA1-210ENST00000552045 KRTAP20-2Q3LI61 65 aa0.85□□□□□ -2.27
LIMA1-210ENST00000552045 BVES-AS1Q5T3Y7 98 aa0.85□□□□□ -2.27
LIMA1-210ENST00000552045 LINC00643Q86TS7 51 aa0.85□□□□□ -2.27
LIMA1-210ENST00000552045 DEFB107AQ8IZN7 70 aa0.85□□□□□ -2.27
LIMA1-210ENST00000552045 H3BUT2 72 aa0.84□□□□□ -2.27
LIMA1-210ENST00000552045 MT1BP07438 61 aa0.84□□□□□ -2.27
LIMA1-210ENST00000552045 IGLC2P0DOY2 106 aa0.84□□□□□ -2.27
LIMA1-210ENST00000552045 IGLC3P0DOY3 106 aa0.84□□□□□ -2.27
LIMA1-210ENST00000552045 SYNE1Q8NF91 8797 aaKnown RBP0.84□□□□□ -2.28
LIMA1-210ENST00000552045 MYMXA0A1B0GTQ4 84 aa0.83□□□□□ -2.28
LIMA1-210ENST00000552045 D6R8Y8 96 aa0.83□□□□□ -2.28
LIMA1-210ENST00000552045 RPS29P62273 56 aaKnown RBP0.83□□□□□ -2.28
LIMA1-210ENST00000552045 MUSTN1Q8IVN3 82 aa0.83□□□□□ -2.28
LIMA1-210ENST00000552045 ARHGAP5-AS1Q96IT6 56 aa0.83□□□□□ -2.28
LIMA1-210ENST00000552045 CMC2Q9NRP2 79 aa0.83□□□□□ -2.28
LIMA1-210ENST00000552045 KANTRA0A1W2PQU2 76 aa0.82□□□□□ -2.28
LIMA1-210ENST00000552045 ACYP1P07311 99 aa0.82□□□□□ -2.28
LIMA1-210ENST00000552045 CNFNQ9BYD5 112 aa0.82□□□□□ -2.28
LIMA1-210ENST00000552045 H0Y9P7 68 aa0.81□□□□□ -2.28
LIMA1-210ENST00000552045 SNRPGP15A8MWD9 76 aa0.8□□□□□ -2.28
LIMA1-210ENST00000552045 C6orf201Q7Z4U5 140 aa0.8□□□□□ -2.28
LIMA1-210ENST00000552045 C18orf32Q8TCD1 76 aa0.8□□□□□ -2.28
LIMA1-210ENST00000552045 TRBV6-1A0A0K0K1D8 114 aa0.79□□□□□ -2.28
LIMA1-210ENST00000552045 CEBPZOSA8MTT3 80 aa0.79□□□□□ -2.28
LIMA1-210ENST00000552045 LINC00959A0A1B0GUT2 108 aa0.78□□□□□ -2.28
LIMA1-210ENST00000552045 CFDP00746 253 aaPredicted RBP0.78□□□□□ -2.28
LIMA1-210ENST00000552045 KRTAP19-8Q3LI54 63 aa0.78□□□□□ -2.28
LIMA1-210ENST00000552045 Q5BKY6 102 aa0.78□□□□□ -2.28
LIMA1-210ENST00000552045 TRBV7-4A0A0J9YYF1 115 aa0.77□□□□□ -2.29
LIMA1-210ENST00000552045 A0A1B0GU69 56 aa0.77□□□□□ -2.29
LIMA1-210ENST00000552045 PHGR1C9JFL3 82 aa0.77□□□□□ -2.29
LIMA1-210ENST00000552045 GNGT1P63211 74 aa0.77□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms