RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 OTOGQ6ZRI0 2925 aa6.17□□□□□ -1.42
CHD4-210ENST00000544040 CSMD3Q7Z407 3707 aa6.14□□□□□ -1.43
CHD4-210ENST00000544040 VPS13CQ709C8 3753 aa6.05□□□□□ -1.44
CHD4-210ENST00000544040 KRTAP4-1Q9BYQ7 146 aa6.01□□□□□ -1.45
CHD4-210ENST00000544040 KRTAP19-5Q3LI72 72 aa5.97□□□□□ -1.45
CHD4-210ENST00000544040 MT1HP80294 61 aa5.97□□□□□ -1.45
CHD4-210ENST00000544040 KRTAP10-7P60409 375 aaPredicted RBP5.91□□□□□ -1.46
CHD4-210ENST00000544040 SPRR2FQ96RM1 72 aa5.9□□□□□ -1.46
CHD4-210ENST00000544040 MT2AP02795 61 aa5.88□□□□□ -1.47
CHD4-210ENST00000544040 LCE3CQ5T5A8 94 aa5.88□□□□□ -1.47
CHD4-210ENST00000544040 BSNQ9UPA5 3926 aa5.86□□□□□ -1.47
CHD4-210ENST00000544040 DNAH10Q8IVF4 4471 aa5.85□□□□□ -1.47
CHD4-210ENST00000544040 DNAH1Q9P2D7 4330 aa5.83□□□□□ -1.48
CHD4-210ENST00000544040 DNAH2Q9P225 4427 aa5.83□□□□□ -1.48
CHD4-210ENST00000544040 DNAH5Q8TE73 4624 aa5.82□□□□□ -1.48
CHD4-210ENST00000544040 SPRR2GQ9BYE4 73 aa5.82□□□□□ -1.48
CHD4-210ENST00000544040 DNAH9Q9NYC9 4486 aa5.79□□□□□ -1.48
CHD4-210ENST00000544040 AKAP9Q99996 3911 aa5.79□□□□□ -1.48
CHD4-210ENST00000544040 MT1FP04733 61 aa5.78□□□□□ -1.48
CHD4-210ENST00000544040 DNAH11Q96DT5 4516 aa5.73□□□□□ -1.49
CHD4-210ENST00000544040 DNAH8Q96JB1 4490 aa5.72□□□□□ -1.49
CHD4-210ENST00000544040 LCE3BQ5TA77 95 aa5.67□□□□□ -1.5
CHD4-210ENST00000544040 FAT1Q14517 4588 aa5.64□□□□□ -1.51
CHD4-210ENST00000544040 PLECQ15149 4684 aaKnown RBP5.62□□□□□ -1.51
CHD4-210ENST00000544040 DNAH17Q9UFH2 4485 aa5.56□□□□□ -1.52
CHD4-210ENST00000544040 SPRR2EP22531 72 aa5.53□□□□□ -1.52
CHD4-210ENST00000544040 SPRR2BP35325 72 aa5.53□□□□□ -1.52
CHD4-210ENST00000544040 SPRR2AP35326 72 aa5.53□□□□□ -1.52
CHD4-210ENST00000544040 KRTAP12-4P60329 112 aa5.52□□□□□ -1.53
CHD4-210ENST00000544040 MT1GP13640 62 aa5.51□□□□□ -1.53
CHD4-210ENST00000544040 DNAH3Q8TD57 4116 aa5.51□□□□□ -1.53
CHD4-210ENST00000544040 ANK2Q01484 3957 aa5.48□□□□□ -1.53
CHD4-210ENST00000544040 FAT2Q9NYQ8 4349 aa5.45□□□□□ -1.54
CHD4-210ENST00000544040 LRP1BQ9NZR2 4599 aa5.44□□□□□ -1.54
CHD4-210ENST00000544040 VPS13DQ5THJ4 4388 aa5.44□□□□□ -1.54
CHD4-210ENST00000544040 SACSQ9NZJ4 4579 aa5.43□□□□□ -1.54
CHD4-210ENST00000544040 ZNF469Q96JG9 3925 aaPredicted RBP5.42□□□□□ -1.54
CHD4-210ENST00000544040 DYNC1H1Q14204 4646 aaKnown RBP5.38□□□□□ -1.55
CHD4-210ENST00000544040 KRTAP19-4Q3LI73 84 aa5.36□□□□□ -1.55
CHD4-210ENST00000544040 DYNC2H1Q8NCM8 4307 aaKnown RBP5.34□□□□□ -1.55
CHD4-210ENST00000544040 VPS13BQ7Z7G8 4022 aa5.34□□□□□ -1.56
CHD4-210ENST00000544040 SPRR2DP22532 72 aa5.33□□□□□ -1.56
CHD4-210ENST00000544040 MT1XP80297 61 aa5.33□□□□□ -1.56
CHD4-210ENST00000544040 KRTAP19-1Q8IUB9 90 aa5.31□□□□□ -1.56
CHD4-210ENST00000544040 STARD9Q9P2P6 4700 aa5.31□□□□□ -1.56
CHD4-210ENST00000544040 FRAS1Q86XX4 4008 aa5.31□□□□□ -1.56
CHD4-210ENST00000544040 APOBP04114 4563 aaKnown RBP5.3□□□□□ -1.56
CHD4-210ENST00000544040 KRTAP19-8Q3LI54 63 aa5.28□□□□□ -1.56
CHD4-210ENST00000544040 KRTAP4-8A0A0G2JLE6 195 aa5.28□□□□□ -1.56
CHD4-210ENST00000544040 KRTAP4-8Q9BYQ9 185 aa5.28□□□□□ -1.56
CHD4-210ENST00000544040 LCE2BO14633 110 aa5.28□□□□□ -1.56
CHD4-210ENST00000544040 LCE3DQ9BYE3 92 aa5.26□□□□□ -1.57
CHD4-210ENST00000544040 RYR1P21817 5038 aa5.23□□□□□ -1.57
CHD4-210ENST00000544040 CMYA5Q8N3K9 4069 aa5.22□□□□□ -1.57
CHD4-210ENST00000544040 KMT2AQ03164 3969 aa5.21□□□□□ -1.57
CHD4-210ENST00000544040 PRKDCP78527 4128 aaKnown RBP5.2□□□□□ -1.58
CHD4-210ENST00000544040 DNAH6Q9C0G6 4158 aa5.19□□□□□ -1.58
CHD4-210ENST00000544040 DNAH7Q8WXX0 4024 aa5.18□□□□□ -1.58
CHD4-210ENST00000544040 MT1BP07438 61 aa5.17□□□□□ -1.58
CHD4-210ENST00000544040 LCE3EQ5T5B0 92 aa5.16□□□□□ -1.58
CHD4-210ENST00000544040 SPRR5A0A1B0GTR4 108 aa5.1□□□□□ -1.59
CHD4-210ENST00000544040 LYSTQ99698 3801 aa5.1□□□□□ -1.59
CHD4-210ENST00000544040 LRP1Q07954 4544 aaKnown RBP5.09□□□□□ -1.59
CHD4-210ENST00000544040 FAT3Q8TDW7 4589 aa5.09□□□□□ -1.6
CHD4-210ENST00000544040 KRTAP4-7Q9BYR0 210 aa5.08□□□□□ -1.6
CHD4-210ENST00000544040 DNHD1Q96M86 4753 aa5.06□□□□□ -1.6
CHD4-210ENST00000544040 KRTAP9-8Q9BYQ0 159 aa5.04□□□□□ -1.6
CHD4-210ENST00000544040 KRTAP17-1Q9BYP8 105 aa5.03□□□□□ -1.6
CHD4-210ENST00000544040 MYCBP2O75592 4640 aa4.99□□□□□ -1.61
CHD4-210ENST00000544040 RYR3Q15413 4870 aa4.97□□□□□ -1.61
CHD4-210ENST00000544040 LCE2CQ5TA81 110 aa4.94□□□□□ -1.62
CHD4-210ENST00000544040 PRM1P04553 51 aa4.94□□□□□ -1.62
CHD4-210ENST00000544040 KRTAP9-3Q9BYQ3 159 aa4.94□□□□□ -1.62
CHD4-210ENST00000544040 KRTAP19-3Q7Z4W3 81 aa4.91□□□□□ -1.62
CHD4-210ENST00000544040 LCE2DQ5TA82 110 aaPredicted RBP4.89□□□□□ -1.63
CHD4-210ENST00000544040 MT1LQ93083 61 aa4.88□□□□□ -1.63
CHD4-210ENST00000544040 HECTD4Q9Y4D8 3996 aa4.87□□□□□ -1.63
CHD4-210ENST00000544040 LOC100996750A0A140TA64 210 aa4.83□□□□□ -1.64
CHD4-210ENST00000544040 MT4P47944 62 aa4.83□□□□□ -1.64
CHD4-210ENST00000544040 MT1EP04732 61 aa4.8□□□□□ -1.64
CHD4-210ENST00000544040 LCE1BQ5T7P3 118 aa4.77□□□□□ -1.65
CHD4-210ENST00000544040 LPAP08519 4548 aa4.76□□□□□ -1.65
CHD4-210ENST00000544040 PKD1P98161 4303 aa4.75□□□□□ -1.65
CHD4-210ENST00000544040 HERC1Q15751 4861 aa4.73□□□□□ -1.65
CHD4-210ENST00000544040 MT3P25713 68 aa4.73□□□□□ -1.65
CHD4-210ENST00000544040 KRTAP4-3Q9BYR4 195 aa4.72□□□□□ -1.65
CHD4-210ENST00000544040 LCE1DQ5T752 114 aa4.71□□□□□ -1.66
CHD4-210ENST00000544040 MT1MQ8N339 61 aa4.69□□□□□ -1.66
CHD4-210ENST00000544040 HSPG2P98160 4391 aa4.67□□□□□ -1.66
CHD4-210ENST00000544040 PKHD1L1Q86WI1 4243 aa4.66□□□□□ -1.66
CHD4-210ENST00000544040 RYR2Q92736 4967 aa4.6□□□□□ -1.67
CHD4-210ENST00000544040 KRTAP4-9Q9BYQ8 210 aa4.58□□□□□ -1.68
CHD4-210ENST00000544040 LRP2P98164 4655 aa4.56□□□□□ -1.68
CHD4-210ENST00000544040 HERC2O95714 4834 aa4.52□□□□□ -1.69
CHD4-210ENST00000544040 PKHD1P08F94 4074 aa4.51□□□□□ -1.69
CHD4-210ENST00000544040 KIAA1109Q2LD37 5005 aa4.48□□□□□ -1.69
CHD4-210ENST00000544040 TNXBP22105 4242 aa4.45□□□□□ -1.7
CHD4-210ENST00000544040 KRTAP19-2Q3LHN2 52 aa4.44□□□□□ -1.7
CHD4-210ENST00000544040 KMT2CQ8NEZ4 4911 aaKnown RBP4.44□□□□□ -1.7
CHD4-210ENST00000544040 LCE5AQ5TCM9 118 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms