RNA–Protein interactions for RNA: ENST00000543473.1

SUDS3-204, Transcript of SDS3 homolog, SIN3A corepressor complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SUDS3, Length 4,897 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUDS3-204ENST00000543473 ALMS1Q8TCU4 4167 aa8.82□□□□□ -1
SUDS3-204ENST00000543473 DNAH1Q9P2D7 4330 aa8.76□□□□□ -1.01
SUDS3-204ENST00000543473 DNAH11Q96DT5 4516 aa8.74□□□□□ -1.01
SUDS3-204ENST00000543473 STARD9Q9P2P6 4700 aa8.65□□□□□ -1.03
SUDS3-204ENST00000543473 VPS13DQ5THJ4 4388 aa8.64□□□□□ -1.03
SUDS3-204ENST00000543473 DNAH10Q8IVF4 4471 aa8.62□□□□□ -1.03
SUDS3-204ENST00000543473 PRKDCP78527 4128 aaKnown RBP8.59□□□□□ -1.03
SUDS3-204ENST00000543473 INE1O15225 51 aa8.58□□□□□ -1.04
SUDS3-204ENST00000543473 DYNC1H1Q14204 4646 aaKnown RBP8.52□□□□□ -1.05
SUDS3-204ENST00000543473 DNAH17Q9UFH2 4485 aa8.5□□□□□ -1.05
SUDS3-204ENST00000543473 FAT1Q14517 4588 aa8.49□□□□□ -1.05
SUDS3-204ENST00000543473 ANK2Q01484 3957 aa8.47□□□□□ -1.05
SUDS3-204ENST00000543473 LORP23490 312 aaPredicted RBP8.46□□□□□ -1.05
SUDS3-204ENST00000543473 LRP1BQ9NZR2 4599 aa8.46□□□□□ -1.06
SUDS3-204ENST00000543473 KRTAP23-1A1A580 65 aa8.41□□□□□ -1.06
SUDS3-204ENST00000543473 RYR1P21817 5038 aa8.36□□□□□ -1.07
SUDS3-204ENST00000543473 DNAH2Q9P225 4427 aa8.34□□□□□ -1.07
SUDS3-204ENST00000543473 KMT2AQ03164 3969 aa8.31□□□□□ -1.08
SUDS3-204ENST00000543473 KRTAP10-12P60413 245 aa8.3□□□□□ -1.08
SUDS3-204ENST00000543473 LCE3AQ5TA76 89 aa8.24□□□□□ -1.09
SUDS3-204ENST00000543473 KIAA1109Q2LD37 5005 aa8.24□□□□□ -1.09
SUDS3-204ENST00000543473 KRTAP12-3P60328 96 aa8.23□□□□□ -1.09
SUDS3-204ENST00000543473 DNAH3Q8TD57 4116 aa8.23□□□□□ -1.09
SUDS3-204ENST00000543473 DYNC2H1Q8NCM8 4307 aaKnown RBP8.22□□□□□ -1.09
SUDS3-204ENST00000543473 FAT2Q9NYQ8 4349 aa8.21□□□□□ -1.1
SUDS3-204ENST00000543473 DNAH8Q96JB1 4490 aa8.2□□□□□ -1.1
SUDS3-204ENST00000543473 KRTAP4-1Q9BYQ7 146 aa8.19□□□□□ -1.1
SUDS3-204ENST00000543473 LYSTQ99698 3801 aa8.18□□□□□ -1.1
SUDS3-204ENST00000543473 SACSQ9NZJ4 4579 aa8.17□□□□□ -1.1
SUDS3-204ENST00000543473 RYR3Q15413 4870 aa8.09□□□□□ -1.11
SUDS3-204ENST00000543473 CMYA5Q8N3K9 4069 aa8.08□□□□□ -1.12
SUDS3-204ENST00000543473 VPS13BQ7Z7G8 4022 aa8.03□□□□□ -1.12
SUDS3-204ENST00000543473 KRTAP17-1Q9BYP8 105 aa8.02□□□□□ -1.13
SUDS3-204ENST00000543473 MYCBP2O75592 4640 aa7.96□□□□□ -1.13
SUDS3-204ENST00000543473 APOBP04114 4563 aaKnown RBP7.96□□□□□ -1.14
SUDS3-204ENST00000543473 MT1HP80294 61 aa7.9□□□□□ -1.15
SUDS3-204ENST00000543473 LRP1Q07954 4544 aaKnown RBP7.88□□□□□ -1.15
SUDS3-204ENST00000543473 RYR2Q92736 4967 aa7.87□□□□□ -1.15
SUDS3-204ENST00000543473 DNAH6Q9C0G6 4158 aa7.87□□□□□ -1.15
SUDS3-204ENST00000543473 DNAH7Q8WXX0 4024 aa7.82□□□□□ -1.16
SUDS3-204ENST00000543473 HYDINQ4G0P3 5121 aa7.81□□□□□ -1.16
SUDS3-204ENST00000543473 CRCT1Q9UGL9 99 aa7.8□□□□□ -1.16
SUDS3-204ENST00000543473 HECTD4Q9Y4D8 3996 aa7.79□□□□□ -1.16
SUDS3-204ENST00000543473 FAT3Q8TDW7 4589 aa7.78□□□□□ -1.16
SUDS3-204ENST00000543473 FRAS1Q86XX4 4008 aa7.76□□□□□ -1.17
SUDS3-204ENST00000543473 MT2AP02795 61 aa7.76□□□□□ -1.17
SUDS3-204ENST00000543473 HERC2O95714 4834 aa7.71□□□□□ -1.17
SUDS3-204ENST00000543473 SPRR2GQ9BYE4 73 aa7.66□□□□□ -1.18
SUDS3-204ENST00000543473 MT1FP04733 61 aa7.64□□□□□ -1.19
SUDS3-204ENST00000543473 PKHD1P08F94 4074 aa7.64□□□□□ -1.19
SUDS3-204ENST00000543473 BIRC6Q9NR09 4857 aa7.55□□□□□ -1.2
SUDS3-204ENST00000543473 KMT2CQ8NEZ4 4911 aaKnown RBP7.54□□□□□ -1.2
SUDS3-204ENST00000543473 HSPG2P98160 4391 aa7.53□□□□□ -1.2
SUDS3-204ENST00000543473 LRP2P98164 4655 aa7.52□□□□□ -1.21
SUDS3-204ENST00000543473 KRTAP8-1Q8IUC2 63 aa7.51□□□□□ -1.21
SUDS3-204ENST00000543473 KRTAP10-5P60370 271 aa7.49□□□□□ -1.21
SUDS3-204ENST00000543473 PKD1P98161 4303 aa7.39□□□□□ -1.23
SUDS3-204ENST00000543473 PCLOQ9Y6V0 5065 aa7.31□□□□□ -1.24
SUDS3-204ENST00000543473 KRTAP19-5Q3LI72 72 aa7.31□□□□□ -1.24
SUDS3-204ENST00000543473 LCE3CQ5T5A8 94 aa7.3□□□□□ -1.24
SUDS3-204ENST00000543473 KRTAP19-1Q8IUB9 90 aa7.3□□□□□ -1.24
SUDS3-204ENST00000543473 SPRR5A0A1B0GTR4 108 aa7.28□□□□□ -1.24
SUDS3-204ENST00000543473 HERC1Q15751 4861 aa7.24□□□□□ -1.25
SUDS3-204ENST00000543473 EPPK1P58107 5090 aaKnown RBP7.21□□□□□ -1.25
SUDS3-204ENST00000543473 LCE2CQ5TA81 110 aa7.2□□□□□ -1.26
SUDS3-204ENST00000543473 LPAP08519 4548 aa7.19□□□□□ -1.26
SUDS3-204ENST00000543473 KRTAP19-8Q3LI54 63 aa7.18□□□□□ -1.26
SUDS3-204ENST00000543473 KRTAP9-8Q9BYQ0 159 aa7.15□□□□□ -1.27
SUDS3-204ENST00000543473 ABCA13Q86UQ4 5058 aa7.13□□□□□ -1.27
SUDS3-204ENST00000543473 KRTAP10-7P60409 375 aaPredicted RBP7.1□□□□□ -1.27
SUDS3-204ENST00000543473 SPRR2FQ96RM1 72 aa7.03□□□□□ -1.28
SUDS3-204ENST00000543473 MT1BP07438 61 aa7.02□□□□□ -1.29
SUDS3-204ENST00000543473 MT1XP80297 61 aa7□□□□□ -1.29
SUDS3-204ENST00000543473 TNXBP22105 4242 aa7□□□□□ -1.29
SUDS3-204ENST00000543473 KRTAP19-2Q3LHN2 52 aa6.98□□□□□ -1.29
SUDS3-204ENST00000543473 KRTAP19-4Q3LI73 84 aa6.98□□□□□ -1.29
SUDS3-204ENST00000543473 PKHD1L1Q86WI1 4243 aa6.96□□□□□ -1.29
SUDS3-204ENST00000543473 KRTAP9-3Q9BYQ3 159 aa6.94□□□□□ -1.3
SUDS3-204ENST00000543473 MUC17Q685J3 4493 aa6.8□□□□□ -1.32
SUDS3-204ENST00000543473 KRTAP4-8A0A0G2JLE6 195 aa6.72□□□□□ -1.33
SUDS3-204ENST00000543473 KRTAP4-8Q9BYQ9 185 aa6.72□□□□□ -1.33
SUDS3-204ENST00000543473 KRTAP12-4P60329 112 aa6.72□□□□□ -1.33
SUDS3-204ENST00000543473 FLGP20930 4061 aaPredicted RBP6.71□□□□□ -1.33
SUDS3-204ENST00000543473 LCE2BO14633 110 aa6.7□□□□□ -1.34
SUDS3-204ENST00000543473 RNF213Q63HN8 5207 aa6.68□□□□□ -1.34
SUDS3-204ENST00000543473 UBR4Q5T4S7 5183 aa6.67□□□□□ -1.34
SUDS3-204ENST00000543473 FAT4Q6V0I7 4981 aa6.63□□□□□ -1.35
SUDS3-204ENST00000543473 MT1GP13640 62 aa6.57□□□□□ -1.36
SUDS3-204ENST00000543473 LCE3BQ5TA77 95 aa6.56□□□□□ -1.36
SUDS3-204ENST00000543473 FSIP2Q5CZC0 6907 aa6.56□□□□□ -1.36
SUDS3-204ENST00000543473 SPRR2EP22531 72 aa6.55□□□□□ -1.36
SUDS3-204ENST00000543473 SPRR2BP35325 72 aa6.55□□□□□ -1.36
SUDS3-204ENST00000543473 SPRR2AP35326 72 aa6.55□□□□□ -1.36
SUDS3-204ENST00000543473 HMCN2Q8NDA2 5059 aa6.49□□□□□ -1.37
SUDS3-204ENST00000543473 KRTAP4-7Q9BYR0 210 aa6.44□□□□□ -1.38
SUDS3-204ENST00000543473 LCE2AQ5TA79 106 aaPredicted RBP6.44□□□□□ -1.38
SUDS3-204ENST00000543473 MUC2Q02817 5179 aa6.43□□□□□ -1.38
SUDS3-204ENST00000543473 SPRR2DP22532 72 aa6.32□□□□□ -1.4
SUDS3-204ENST00000543473 MT1LQ93083 61 aa6.32□□□□□ -1.4
SUDS3-204ENST00000543473 LCE3DQ9BYE3 92 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms