RNA–Protein interactions for RNA: ENST00000538239.5

LRP6-203, Transcript of LDL receptor related protein 6, humanhuman

TSL 1 (best)

Gene LRP6, Length 7,812 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-203ENST00000538239 KRTAP3-3Q9BYR6 98 aa2.38□□□□□ -2.03
LRP6-203ENST00000538239 SRRM2Q9UQ35 2752 aaKnown RBP2.35□□□□□ -2.03
LRP6-203ENST00000538239 PLECQ15149 4684 aaKnown RBP2.35□□□□□ -2.03
LRP6-203ENST00000538239 DNAH3Q8TD57 4116 aa2.35□□□□□ -2.03
LRP6-203ENST00000538239 KRTAP3-2Q9BYR7 98 aa2.35□□□□□ -2.03
LRP6-203ENST00000538239 DNAH5Q8TE73 4624 aa2.34□□□□□ -2.04
LRP6-203ENST00000538239 VPS13DQ5THJ4 4388 aa2.32□□□□□ -2.04
LRP6-203ENST00000538239 DNAH10Q8IVF4 4471 aa2.32□□□□□ -2.04
LRP6-203ENST00000538239 CMYA5Q8N3K9 4069 aa2.32□□□□□ -2.04
LRP6-203ENST00000538239 PCLOQ9Y6V0 5065 aa2.32□□□□□ -2.04
LRP6-203ENST00000538239 LORP23490 312 aaPredicted RBP2.32□□□□□ -2.04
LRP6-203ENST00000538239 FAT2Q9NYQ8 4349 aa2.31□□□□□ -2.04
LRP6-203ENST00000538239 DNAH17Q9UFH2 4485 aa2.3□□□□□ -2.04
LRP6-203ENST00000538239 KRTAP4-1Q9BYQ7 146 aa2.3□□□□□ -2.04
LRP6-203ENST00000538239 ANK2Q01484 3957 aa2.3□□□□□ -2.04
LRP6-203ENST00000538239 DNAH11Q96DT5 4516 aa2.29□□□□□ -2.04
LRP6-203ENST00000538239 DNAH2Q9P225 4427 aa2.29□□□□□ -2.04
LRP6-203ENST00000538239 MT1HP80294 61 aa2.29□□□□□ -2.04
LRP6-203ENST00000538239 LCE3AQ5TA76 89 aa2.29□□□□□ -2.04
LRP6-203ENST00000538239 STARD9Q9P2P6 4700 aa2.29□□□□□ -2.04
LRP6-203ENST00000538239 KRTAP8-1Q8IUC2 63 aa2.28□□□□□ -2.04
LRP6-203ENST00000538239 KRTAP12-3P60328 96 aa2.28□□□□□ -2.05
LRP6-203ENST00000538239 DYNC2H1Q8NCM8 4307 aaKnown RBP2.27□□□□□ -2.05
LRP6-203ENST00000538239 KMT2AQ03164 3969 aa2.27□□□□□ -2.05
LRP6-203ENST00000538239 PRKDCP78527 4128 aaKnown RBP2.27□□□□□ -2.05
LRP6-203ENST00000538239 LRP1BQ9NZR2 4599 aa2.27□□□□□ -2.05
LRP6-203ENST00000538239 DNAH6Q9C0G6 4158 aa2.25□□□□□ -2.05
LRP6-203ENST00000538239 DNHD1Q96M86 4753 aa2.25□□□□□ -2.05
LRP6-203ENST00000538239 DYNC1H1Q14204 4646 aaKnown RBP2.24□□□□□ -2.05
LRP6-203ENST00000538239 DNAH7Q8WXX0 4024 aa2.23□□□□□ -2.05
LRP6-203ENST00000538239 LCE2DQ5TA82 110 aaPredicted RBP2.22□□□□□ -2.05
LRP6-203ENST00000538239 MT2AP02795 61 aa2.21□□□□□ -2.06
LRP6-203ENST00000538239 FRAS1Q86XX4 4008 aa2.2□□□□□ -2.06
LRP6-203ENST00000538239 VPS13BQ7Z7G8 4022 aa2.2□□□□□ -2.06
LRP6-203ENST00000538239 SACSQ9NZJ4 4579 aa2.19□□□□□ -2.06
LRP6-203ENST00000538239 FAT1Q14517 4588 aa2.19□□□□□ -2.06
LRP6-203ENST00000538239 DNAH8Q96JB1 4490 aa2.18□□□□□ -2.06
LRP6-203ENST00000538239 MT1FP04733 61 aa2.18□□□□□ -2.06
LRP6-203ENST00000538239 KRTAP17-1Q9BYP8 105 aa2.16□□□□□ -2.06
LRP6-203ENST00000538239 SPRR2FQ96RM1 72 aa2.16□□□□□ -2.06
LRP6-203ENST00000538239 KRTAP23-1A1A580 65 aa2.15□□□□□ -2.07
LRP6-203ENST00000538239 LYSTQ99698 3801 aa2.15□□□□□ -2.07
LRP6-203ENST00000538239 KRTAP10-5P60370 271 aa2.14□□□□□ -2.07
LRP6-203ENST00000538239 SPRR2GQ9BYE4 73 aa2.13□□□□□ -2.07
LRP6-203ENST00000538239 HECTD4Q9Y4D8 3996 aa2.11□□□□□ -2.07
LRP6-203ENST00000538239 APOBP04114 4563 aaKnown RBP2.1□□□□□ -2.07
LRP6-203ENST00000538239 INE1O15225 51 aa2.09□□□□□ -2.07
LRP6-203ENST00000538239 FAT3Q8TDW7 4589 aa2.09□□□□□ -2.07
LRP6-203ENST00000538239 KRTAP19-5Q3LI72 72 aa2.09□□□□□ -2.08
LRP6-203ENST00000538239 HSPG2P98160 4391 aa2.08□□□□□ -2.08
LRP6-203ENST00000538239 KRTAP10-7P60409 375 aaPredicted RBP2.08□□□□□ -2.08
LRP6-203ENST00000538239 RYR3Q15413 4870 aa2.08□□□□□ -2.08
LRP6-203ENST00000538239 SPRR2EP22531 72 aa2.07□□□□□ -2.08
LRP6-203ENST00000538239 SPRR2BP35325 72 aa2.07□□□□□ -2.08
LRP6-203ENST00000538239 SPRR2AP35326 72 aa2.07□□□□□ -2.08
LRP6-203ENST00000538239 PKHD1L1Q86WI1 4243 aa2.04□□□□□ -2.08
LRP6-203ENST00000538239 LRP1Q07954 4544 aaKnown RBP2.01□□□□□ -2.09
LRP6-203ENST00000538239 HYDINQ4G0P3 5121 aa2.01□□□□□ -2.09
LRP6-203ENST00000538239 LPAP08519 4548 aa2□□□□□ -2.09
LRP6-203ENST00000538239 SPRR2DP22532 72 aa2□□□□□ -2.09
LRP6-203ENST00000538239 LCE3CQ5T5A8 94 aa1.99□□□□□ -2.09
LRP6-203ENST00000538239 PKHD1P08F94 4074 aa1.99□□□□□ -2.09
LRP6-203ENST00000538239 RYR2Q92736 4967 aa1.99□□□□□ -2.09
LRP6-203ENST00000538239 KRTAP19-1Q8IUB9 90 aa1.98□□□□□ -2.09
LRP6-203ENST00000538239 KRTAP19-8Q3LI54 63 aa1.97□□□□□ -2.09
LRP6-203ENST00000538239 KRTAP9-8Q9BYQ0 159 aa1.97□□□□□ -2.09
LRP6-203ENST00000538239 PKD1P98161 4303 aa1.96□□□□□ -2.1
LRP6-203ENST00000538239 MYCBP2O75592 4640 aa1.96□□□□□ -2.1
LRP6-203ENST00000538239 TNXBP22105 4242 aa1.96□□□□□ -2.1
LRP6-203ENST00000538239 MT1XP80297 61 aa1.95□□□□□ -2.1
LRP6-203ENST00000538239 LCE2BO14633 110 aa1.95□□□□□ -2.1
LRP6-203ENST00000538239 MT1BP07438 61 aa1.94□□□□□ -2.1
LRP6-203ENST00000538239 BIRC6Q9NR09 4857 aa1.94□□□□□ -2.1
LRP6-203ENST00000538239 LCE2CQ5TA81 110 aa1.94□□□□□ -2.1
LRP6-203ENST00000538239 KRTAP9-3Q9BYQ3 159 aa1.93□□□□□ -2.1
LRP6-203ENST00000538239 KRTAP4-8A0A0G2JLE6 195 aa1.93□□□□□ -2.1
LRP6-203ENST00000538239 KRTAP4-8Q9BYQ9 185 aa1.93□□□□□ -2.1
LRP6-203ENST00000538239 HERC1Q15751 4861 aa1.92□□□□□ -2.1
LRP6-203ENST00000538239 KIAA1109Q2LD37 5005 aa1.92□□□□□ -2.1
LRP6-203ENST00000538239 MT1GP13640 62 aa1.92□□□□□ -2.1
LRP6-203ENST00000538239 LCE3BQ5TA77 95 aa1.91□□□□□ -2.1
LRP6-203ENST00000538239 HERC2O95714 4834 aa1.9□□□□□ -2.11
LRP6-203ENST00000538239 MUC17Q685J3 4493 aa1.89□□□□□ -2.11
LRP6-203ENST00000538239 KRTAP9-2Q9BYQ4 174 aa1.88□□□□□ -2.11
LRP6-203ENST00000538239 KRTAP12-4P60329 112 aa1.86□□□□□ -2.11
LRP6-203ENST00000538239 LRP2P98164 4655 aa1.86□□□□□ -2.11
LRP6-203ENST00000538239 KRTAP19-4Q3LI73 84 aa1.85□□□□□ -2.11
LRP6-203ENST00000538239 LCE2AQ5TA79 106 aaPredicted RBP1.85□□□□□ -2.11
LRP6-203ENST00000538239 KRTAP19-2Q3LHN2 52 aa1.82□□□□□ -2.12
LRP6-203ENST00000538239 KMT2CQ8NEZ4 4911 aaKnown RBP1.8□□□□□ -2.12
LRP6-203ENST00000538239 KRTAP19-3Q7Z4W3 81 aa1.8□□□□□ -2.12
LRP6-203ENST00000538239 FLGP20930 4061 aaPredicted RBP1.79□□□□□ -2.12
LRP6-203ENST00000538239 KRTAP9-6A0A140TA67 174 aa1.79□□□□□ -2.12
LRP6-203ENST00000538239 MT4P47944 62 aa1.79□□□□□ -2.12
LRP6-203ENST00000538239 KRTAP4-7Q9BYR0 210 aa1.79□□□□□ -2.12
LRP6-203ENST00000538239 KRTAP19-6Q3LI70 58 aa1.77□□□□□ -2.13
LRP6-203ENST00000538239 EPPK1P58107 5090 aaKnown RBP1.77□□□□□ -2.13
LRP6-203ENST00000538239 MT1EP04732 61 aa1.76□□□□□ -2.13
LRP6-203ENST00000538239 MT1LQ93083 61 aa1.76□□□□□ -2.13
LRP6-203ENST00000538239 UBR4Q5T4S7 5183 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms