RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 DNAH1Q9P2D7 4330 aa7.79□□□□□ -1.16
PHRF1-205ENST00000533464 ALMS1Q8TCU4 4167 aa7.78□□□□□ -1.16
PHRF1-205ENST00000533464 DNAH11Q96DT5 4516 aa7.78□□□□□ -1.16
PHRF1-205ENST00000533464 LORP23490 312 aaPredicted RBP7.68□□□□□ -1.18
PHRF1-205ENST00000533464 DNAH10Q8IVF4 4471 aa7.64□□□□□ -1.19
PHRF1-205ENST00000533464 KRTAP10-12P60413 245 aa7.64□□□□□ -1.19
PHRF1-205ENST00000533464 VPS13DQ5THJ4 4388 aa7.6□□□□□ -1.19
PHRF1-205ENST00000533464 FAT1Q14517 4588 aa7.55□□□□□ -1.2
PHRF1-205ENST00000533464 DNAH17Q9UFH2 4485 aa7.55□□□□□ -1.2
PHRF1-205ENST00000533464 DYNC1H1Q14204 4646 aaKnown RBP7.53□□□□□ -1.2
PHRF1-205ENST00000533464 STARD9Q9P2P6 4700 aa7.5□□□□□ -1.21
PHRF1-205ENST00000533464 LRP1BQ9NZR2 4599 aa7.48□□□□□ -1.21
PHRF1-205ENST00000533464 KRTAP4-1Q9BYQ7 146 aa7.46□□□□□ -1.21
PHRF1-205ENST00000533464 KRTAP12-3P60328 96 aa7.46□□□□□ -1.22
PHRF1-205ENST00000533464 LCE3AQ5TA76 89 aa7.43□□□□□ -1.22
PHRF1-205ENST00000533464 RYR1P21817 5038 aa7.41□□□□□ -1.22
PHRF1-205ENST00000533464 KRTAP23-1A1A580 65 aa7.41□□□□□ -1.22
PHRF1-205ENST00000533464 DNAH2Q9P225 4427 aa7.39□□□□□ -1.23
PHRF1-205ENST00000533464 DNAH8Q96JB1 4490 aa7.38□□□□□ -1.23
PHRF1-205ENST00000533464 PRKDCP78527 4128 aaKnown RBP7.35□□□□□ -1.23
PHRF1-205ENST00000533464 CRCT1Q9UGL9 99 aa7.3□□□□□ -1.24
PHRF1-205ENST00000533464 SACSQ9NZJ4 4579 aa7.29□□□□□ -1.24
PHRF1-205ENST00000533464 DYNC2H1Q8NCM8 4307 aaKnown RBP7.24□□□□□ -1.25
PHRF1-205ENST00000533464 FAT2Q9NYQ8 4349 aa7.24□□□□□ -1.25
PHRF1-205ENST00000533464 DNAH3Q8TD57 4116 aa7.22□□□□□ -1.25
PHRF1-205ENST00000533464 KMT2AQ03164 3969 aa7.21□□□□□ -1.25
PHRF1-205ENST00000533464 INE1O15225 51 aa7.21□□□□□ -1.25
PHRF1-205ENST00000533464 MT1HP80294 61 aa7.2□□□□□ -1.26
PHRF1-205ENST00000533464 ANK2Q01484 3957 aa7.18□□□□□ -1.26
PHRF1-205ENST00000533464 LYSTQ99698 3801 aa7.16□□□□□ -1.26
PHRF1-205ENST00000533464 APOBP04114 4563 aaKnown RBP7.15□□□□□ -1.26
PHRF1-205ENST00000533464 KIAA1109Q2LD37 5005 aa7.15□□□□□ -1.27
PHRF1-205ENST00000533464 MYCBP2O75592 4640 aa7.14□□□□□ -1.27
PHRF1-205ENST00000533464 MT2AP02795 61 aa7.13□□□□□ -1.27
PHRF1-205ENST00000533464 VPS13BQ7Z7G8 4022 aa7.11□□□□□ -1.27
PHRF1-205ENST00000533464 SPRR2GQ9BYE4 73 aa7.08□□□□□ -1.28
PHRF1-205ENST00000533464 RYR3Q15413 4870 aa7.03□□□□□ -1.28
PHRF1-205ENST00000533464 MT1FP04733 61 aa7.01□□□□□ -1.29
PHRF1-205ENST00000533464 KRTAP8-1Q8IUC2 63 aa7.01□□□□□ -1.29
PHRF1-205ENST00000533464 KRTAP17-1Q9BYP8 105 aa7.01□□□□□ -1.29
PHRF1-205ENST00000533464 LRP1Q07954 4544 aaKnown RBP6.93□□□□□ -1.3
PHRF1-205ENST00000533464 FAT3Q8TDW7 4589 aa6.88□□□□□ -1.31
PHRF1-205ENST00000533464 FRAS1Q86XX4 4008 aa6.85□□□□□ -1.31
PHRF1-205ENST00000533464 DNAH6Q9C0G6 4158 aa6.84□□□□□ -1.31
PHRF1-205ENST00000533464 CMYA5Q8N3K9 4069 aa6.81□□□□□ -1.32
PHRF1-205ENST00000533464 RYR2Q92736 4967 aa6.79□□□□□ -1.32
PHRF1-205ENST00000533464 KRTAP10-5P60370 271 aa6.77□□□□□ -1.33
PHRF1-205ENST00000533464 HECTD4Q9Y4D8 3996 aa6.75□□□□□ -1.33
PHRF1-205ENST00000533464 DNAH7Q8WXX0 4024 aa6.71□□□□□ -1.33
PHRF1-205ENST00000533464 KRTAP19-5Q3LI72 72 aa6.71□□□□□ -1.34
PHRF1-205ENST00000533464 KRTAP19-1Q8IUB9 90 aa6.71□□□□□ -1.34
PHRF1-205ENST00000533464 HERC2O95714 4834 aa6.68□□□□□ -1.34
PHRF1-205ENST00000533464 LRP2P98164 4655 aa6.65□□□□□ -1.35
PHRF1-205ENST00000533464 HYDINQ4G0P3 5121 aa6.64□□□□□ -1.35
PHRF1-205ENST00000533464 KRTAP19-8Q3LI54 63 aa6.61□□□□□ -1.35
PHRF1-205ENST00000533464 LCE3CQ5T5A8 94 aa6.56□□□□□ -1.36
PHRF1-205ENST00000533464 KRTAP10-7P60409 375 aaPredicted RBP6.55□□□□□ -1.36
PHRF1-205ENST00000533464 SPRR2FQ96RM1 72 aa6.55□□□□□ -1.36
PHRF1-205ENST00000533464 PKHD1P08F94 4074 aa6.54□□□□□ -1.36
PHRF1-205ENST00000533464 HSPG2P98160 4391 aa6.51□□□□□ -1.37
PHRF1-205ENST00000533464 MT1XP80297 61 aa6.47□□□□□ -1.37
PHRF1-205ENST00000533464 KRTAP9-8Q9BYQ0 159 aa6.46□□□□□ -1.37
PHRF1-205ENST00000533464 MT1BP07438 61 aa6.44□□□□□ -1.38
PHRF1-205ENST00000533464 LCE2CQ5TA81 110 aa6.44□□□□□ -1.38
PHRF1-205ENST00000533464 BIRC6Q9NR09 4857 aa6.42□□□□□ -1.38
PHRF1-205ENST00000533464 PKD1P98161 4303 aa6.42□□□□□ -1.38
PHRF1-205ENST00000533464 PCLOQ9Y6V0 5065 aa6.41□□□□□ -1.38
PHRF1-205ENST00000533464 KRTAP19-4Q3LI73 84 aa6.35□□□□□ -1.39
PHRF1-205ENST00000533464 HERC1Q15751 4861 aa6.33□□□□□ -1.4
PHRF1-205ENST00000533464 KMT2CQ8NEZ4 4911 aaKnown RBP6.32□□□□□ -1.4
PHRF1-205ENST00000533464 LPAP08519 4548 aa6.31□□□□□ -1.4
PHRF1-205ENST00000533464 KRTAP9-3Q9BYQ3 159 aa6.29□□□□□ -1.4
PHRF1-205ENST00000533464 KRTAP4-8A0A0G2JLE6 195 aa6.23□□□□□ -1.41
PHRF1-205ENST00000533464 KRTAP4-8Q9BYQ9 185 aa6.23□□□□□ -1.41
PHRF1-205ENST00000533464 KRTAP19-2Q3LHN2 52 aa6.21□□□□□ -1.42
PHRF1-205ENST00000533464 SPRR5A0A1B0GTR4 108 aa6.11□□□□□ -1.43
PHRF1-205ENST00000533464 PKHD1L1Q86WI1 4243 aa6.09□□□□□ -1.43
PHRF1-205ENST00000533464 TNXBP22105 4242 aa6.09□□□□□ -1.43
PHRF1-205ENST00000533464 MUC17Q685J3 4493 aa6.09□□□□□ -1.43
PHRF1-205ENST00000533464 MT1GP13640 62 aa6.07□□□□□ -1.44
PHRF1-205ENST00000533464 ABCA13Q86UQ4 5058 aa6.06□□□□□ -1.44
PHRF1-205ENST00000533464 SPRR2EP22531 72 aa6.06□□□□□ -1.44
PHRF1-205ENST00000533464 SPRR2BP35325 72 aa6.06□□□□□ -1.44
PHRF1-205ENST00000533464 SPRR2AP35326 72 aa6.06□□□□□ -1.44
PHRF1-205ENST00000533464 LCE2BO14633 110 aa6.02□□□□□ -1.44
PHRF1-205ENST00000533464 EPPK1P58107 5090 aaKnown RBP6.02□□□□□ -1.45
PHRF1-205ENST00000533464 LCE3BQ5TA77 95 aa6.01□□□□□ -1.45
PHRF1-205ENST00000533464 FLGP20930 4061 aaPredicted RBP5.98□□□□□ -1.45
PHRF1-205ENST00000533464 KRTAP12-4P60329 112 aa5.87□□□□□ -1.47
PHRF1-205ENST00000533464 KRTAP4-7Q9BYR0 210 aa5.86□□□□□ -1.47
PHRF1-205ENST00000533464 SPRR2DP22532 72 aa5.85□□□□□ -1.47
PHRF1-205ENST00000533464 UBR4Q5T4S7 5183 aa5.83□□□□□ -1.48
PHRF1-205ENST00000533464 MT1LQ93083 61 aa5.82□□□□□ -1.48
PHRF1-205ENST00000533464 KRTAP19-3Q7Z4W3 81 aa5.8□□□□□ -1.48
PHRF1-205ENST00000533464 FAT4Q6V0I7 4981 aa5.79□□□□□ -1.48
PHRF1-205ENST00000533464 FSIP2Q5CZC0 6907 aa5.79□□□□□ -1.48
PHRF1-205ENST00000533464 MT1EP04732 61 aa5.79□□□□□ -1.48
PHRF1-205ENST00000533464 SYNE1Q8NF91 8797 aaKnown RBP5.75□□□□□ -1.49
PHRF1-205ENST00000533464 RNF213Q63HN8 5207 aa5.74□□□□□ -1.49
PHRF1-205ENST00000533464 HMCN2Q8NDA2 5059 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms