RNA–Protein interactions for RNA: ENST00000532463.5

CTNND1-231, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,749 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-231ENST00000532463 KRTAP8-1Q8IUC2 63 aa3.35□□□□□ -1.87
CTNND1-231ENST00000532463 LORP23490 312 aaPredicted RBP3.3□□□□□ -1.88
CTNND1-231ENST00000532463 KRTAP10-7P60409 375 aaPredicted RBP3.29□□□□□ -1.88
CTNND1-231ENST00000532463 MT1HL1P0DM35 61 aa3.28□□□□□ -1.88
CTNND1-231ENST00000532463 CSMD3Q7Z407 3707 aa3.26□□□□□ -1.89
CTNND1-231ENST00000532463 HUWE1Q7Z6Z7 4374 aaKnown RBP3.24□□□□□ -1.89
CTNND1-231ENST00000532463 KRTAP10-4P60372 401 aaPredicted RBP3.22□□□□□ -1.89
CTNND1-231ENST00000532463 LCE2BO14633 110 aa3.2□□□□□ -1.9
CTNND1-231ENST00000532463 DNHD1Q96M86 4753 aa3.18□□□□□ -1.9
CTNND1-231ENST00000532463 ALMS1Q8TCU4 4167 aa3.15□□□□□ -1.9
CTNND1-231ENST00000532463 KRTAP19-4Q3LI73 84 aa3.14□□□□□ -1.91
CTNND1-231ENST00000532463 DNAH9Q9NYC9 4486 aa3.12□□□□□ -1.91
CTNND1-231ENST00000532463 LCE3CQ5T5A8 94 aa3.11□□□□□ -1.91
CTNND1-231ENST00000532463 LYSTQ99698 3801 aa3.1□□□□□ -1.91
CTNND1-231ENST00000532463 CMYA5Q8N3K9 4069 aa3.1□□□□□ -1.91
CTNND1-231ENST00000532463 ANK2Q01484 3957 aa3.09□□□□□ -1.92
CTNND1-231ENST00000532463 LCE2AQ5TA79 106 aaPredicted RBP3.07□□□□□ -1.92
CTNND1-231ENST00000532463 DNAH10Q8IVF4 4471 aa3.04□□□□□ -1.92
CTNND1-231ENST00000532463 KRTAP12-4P60329 112 aa3.04□□□□□ -1.92
CTNND1-231ENST00000532463 KRTAP19-5Q3LI72 72 aa3.04□□□□□ -1.92
CTNND1-231ENST00000532463 DNAH5Q8TE73 4624 aa3.04□□□□□ -1.92
CTNND1-231ENST00000532463 SPRR2FQ96RM1 72 aa3.03□□□□□ -1.92
CTNND1-231ENST00000532463 LCE2CQ5TA81 110 aa3□□□□□ -1.93
CTNND1-231ENST00000532463 KRTAP4-1Q9BYQ7 146 aa2.99□□□□□ -1.93
CTNND1-231ENST00000532463 FAT1Q14517 4588 aa2.99□□□□□ -1.93
CTNND1-231ENST00000532463 PLECQ15149 4684 aaKnown RBP2.98□□□□□ -1.93
CTNND1-231ENST00000532463 DNAH1Q9P2D7 4330 aa2.98□□□□□ -1.93
CTNND1-231ENST00000532463 DNAH11Q96DT5 4516 aa2.97□□□□□ -1.93
CTNND1-231ENST00000532463 LCE3BQ5TA77 95 aa2.97□□□□□ -1.93
CTNND1-231ENST00000532463 DNAH2Q9P225 4427 aa2.97□□□□□ -1.93
CTNND1-231ENST00000532463 DNAH7Q8WXX0 4024 aa2.96□□□□□ -1.94
CTNND1-231ENST00000532463 PRKDCP78527 4128 aaKnown RBP2.96□□□□□ -1.94
CTNND1-231ENST00000532463 SPRR2GQ9BYE4 73 aa2.95□□□□□ -1.94
CTNND1-231ENST00000532463 FRAS1Q86XX4 4008 aa2.95□□□□□ -1.94
CTNND1-231ENST00000532463 DNAH8Q96JB1 4490 aa2.94□□□□□ -1.94
CTNND1-231ENST00000532463 KMT2AQ03164 3969 aa2.94□□□□□ -1.94
CTNND1-231ENST00000532463 MT3P25713 68 aa2.94□□□□□ -1.94
CTNND1-231ENST00000532463 STARD9Q9P2P6 4700 aa2.92□□□□□ -1.94
CTNND1-231ENST00000532463 RYR1P21817 5038 aa2.91□□□□□ -1.94
CTNND1-231ENST00000532463 DYNC1H1Q14204 4646 aaKnown RBP2.91□□□□□ -1.94
CTNND1-231ENST00000532463 LCE3DQ9BYE3 92 aa2.9□□□□□ -1.94
CTNND1-231ENST00000532463 MT1HP80294 61 aa2.89□□□□□ -1.95
CTNND1-231ENST00000532463 LRP1BQ9NZR2 4599 aa2.89□□□□□ -1.95
CTNND1-231ENST00000532463 LCE3EQ5T5B0 92 aa2.89□□□□□ -1.95
CTNND1-231ENST00000532463 MT2AP02795 61 aa2.88□□□□□ -1.95
CTNND1-231ENST00000532463 VPS13DQ5THJ4 4388 aa2.88□□□□□ -1.95
CTNND1-231ENST00000532463 DNAH17Q9UFH2 4485 aa2.86□□□□□ -1.95
CTNND1-231ENST00000532463 DNAH3Q8TD57 4116 aa2.84□□□□□ -1.95
CTNND1-231ENST00000532463 MT1FP04733 61 aa2.84□□□□□ -1.95
CTNND1-231ENST00000532463 FAT2Q9NYQ8 4349 aa2.84□□□□□ -1.95
CTNND1-231ENST00000532463 KRTAP17-1Q9BYP8 105 aa2.83□□□□□ -1.96
CTNND1-231ENST00000532463 SPRR2EP22531 72 aa2.82□□□□□ -1.96
CTNND1-231ENST00000532463 SPRR2BP35325 72 aa2.82□□□□□ -1.96
CTNND1-231ENST00000532463 SPRR2AP35326 72 aa2.82□□□□□ -1.96
CTNND1-231ENST00000532463 RYR3Q15413 4870 aa2.81□□□□□ -1.96
CTNND1-231ENST00000532463 DNAH6Q9C0G6 4158 aa2.81□□□□□ -1.96
CTNND1-231ENST00000532463 APOBP04114 4563 aaKnown RBP2.81□□□□□ -1.96
CTNND1-231ENST00000532463 SACSQ9NZJ4 4579 aa2.8□□□□□ -1.96
CTNND1-231ENST00000532463 MT1GP13640 62 aa2.79□□□□□ -1.96
CTNND1-231ENST00000532463 KIAA1109Q2LD37 5005 aa2.79□□□□□ -1.96
CTNND1-231ENST00000532463 VPS13BQ7Z7G8 4022 aa2.78□□□□□ -1.96
CTNND1-231ENST00000532463 SPRR5A0A1B0GTR4 108 aa2.78□□□□□ -1.96
CTNND1-231ENST00000532463 DYNC2H1Q8NCM8 4307 aaKnown RBP2.77□□□□□ -1.97
CTNND1-231ENST00000532463 BIRC6Q9NR09 4857 aa2.74□□□□□ -1.97
CTNND1-231ENST00000532463 HECTD4Q9Y4D8 3996 aa2.74□□□□□ -1.97
CTNND1-231ENST00000532463 MYCBP2O75592 4640 aa2.74□□□□□ -1.97
CTNND1-231ENST00000532463 HYDINQ4G0P3 5121 aa2.74□□□□□ -1.97
CTNND1-231ENST00000532463 SPRR2DP22532 72 aa2.74□□□□□ -1.97
CTNND1-231ENST00000532463 RYR2Q92736 4967 aa2.71□□□□□ -1.98
CTNND1-231ENST00000532463 HERC2O95714 4834 aa2.7□□□□□ -1.98
CTNND1-231ENST00000532463 KRTAP19-1Q8IUB9 90 aa2.69□□□□□ -1.98
CTNND1-231ENST00000532463 PRM1P04553 51 aa2.68□□□□□ -1.98
CTNND1-231ENST00000532463 PKHD1P08F94 4074 aa2.66□□□□□ -1.98
CTNND1-231ENST00000532463 MT1XP80297 61 aa2.65□□□□□ -1.98
CTNND1-231ENST00000532463 KRTAP19-8Q3LI54 63 aa2.65□□□□□ -1.99
CTNND1-231ENST00000532463 LRP1Q07954 4544 aaKnown RBP2.64□□□□□ -1.99
CTNND1-231ENST00000532463 FAT3Q8TDW7 4589 aa2.64□□□□□ -1.99
CTNND1-231ENST00000532463 KRTAP4-8A0A0G2JLE6 195 aa2.63□□□□□ -1.99
CTNND1-231ENST00000532463 KRTAP4-8Q9BYQ9 185 aa2.63□□□□□ -1.99
CTNND1-231ENST00000532463 HSPG2P98160 4391 aa2.62□□□□□ -1.99
CTNND1-231ENST00000532463 PKD1P98161 4303 aa2.59□□□□□ -1.99
CTNND1-231ENST00000532463 PCLOQ9Y6V0 5065 aa2.59□□□□□ -1.99
CTNND1-231ENST00000532463 HERC1Q15751 4861 aa2.58□□□□□ -2
CTNND1-231ENST00000532463 MT1BP07438 61 aa2.58□□□□□ -2
CTNND1-231ENST00000532463 KMT2CQ8NEZ4 4911 aaKnown RBP2.58□□□□□ -2
CTNND1-231ENST00000532463 LPAP08519 4548 aa2.56□□□□□ -2
CTNND1-231ENST00000532463 KRTAP4-7Q9BYR0 210 aa2.56□□□□□ -2
CTNND1-231ENST00000532463 MT1LQ93083 61 aa2.55□□□□□ -2
CTNND1-231ENST00000532463 LCE1BQ5T7P3 118 aa2.54□□□□□ -2
CTNND1-231ENST00000532463 LRP2P98164 4655 aa2.52□□□□□ -2.01
CTNND1-231ENST00000532463 EPPK1P58107 5090 aaKnown RBP2.52□□□□□ -2.01
CTNND1-231ENST00000532463 PKHD1L1Q86WI1 4243 aa2.51□□□□□ -2.01
CTNND1-231ENST00000532463 KRTAP19-3Q7Z4W3 81 aa2.51□□□□□ -2.01
CTNND1-231ENST00000532463 KRTAP9-2Q9BYQ4 174 aa2.51□□□□□ -2.01
CTNND1-231ENST00000532463 KRTAP9-8Q9BYQ0 159 aa2.5□□□□□ -2.01
CTNND1-231ENST00000532463 LCE1DQ5T752 114 aa2.49□□□□□ -2.01
CTNND1-231ENST00000532463 TNXBP22105 4242 aa2.45□□□□□ -2.02
CTNND1-231ENST00000532463 ABCA13Q86UQ4 5058 aa2.44□□□□□ -2.02
CTNND1-231ENST00000532463 KRTAP9-3Q9BYQ3 159 aa2.44□□□□□ -2.02
CTNND1-231ENST00000532463 KRTAP9-6A0A140TA67 174 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms