RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 BIRC6Q9NR09 4857 aa2.54□□□□□ -2
PCF11-202ENST00000528336 LINC00208Q96KT6 92 aa2.54□□□□□ -2
PCF11-202ENST00000528336 DYNC1H1Q14204 4646 aaKnown RBP2.54□□□□□ -2
PCF11-202ENST00000528336 COX6A2Q02221 97 aa2.53□□□□□ -2
PCF11-202ENST00000528336 UQCR11O14957 56 aa2.52□□□□□ -2.01
PCF11-202ENST00000528336 LEPROTL1O95214 131 aa2.52□□□□□ -2.01
PCF11-202ENST00000528336 Q6JHZ5 121 aa2.52□□□□□ -2.01
PCF11-202ENST00000528336 ZCCHC13Q8WW36 166 aaKnown RBP2.52□□□□□ -2.01
PCF11-202ENST00000528336 Q96NJ1 140 aa2.52□□□□□ -2.01
PCF11-202ENST00000528336 SPRR4Q96PI1 79 aa2.52□□□□□ -2.01
PCF11-202ENST00000528336 PRR15LQ9BU68 103 aa2.52□□□□□ -2.01
PCF11-202ENST00000528336 PLAC8Q9NZF1 115 aa2.52□□□□□ -2.01
PCF11-202ENST00000528336 CDKN2A-AS1Q9UH64 79 aa2.52□□□□□ -2.01
PCF11-202ENST00000528336 KIAA1109Q2LD37 5005 aa2.52□□□□□ -2.01
PCF11-202ENST00000528336 LRP1BQ9NZR2 4599 aa2.52□□□□□ -2.01
PCF11-202ENST00000528336 DNAH5Q8TE73 4624 aa2.51□□□□□ -2.01
PCF11-202ENST00000528336 PLNP26678 52 aa2.51□□□□□ -2.01
PCF11-202ENST00000528336 KRTAP6-3Q3LI67 103 aa2.51□□□□□ -2.01
PCF11-202ENST00000528336 LINC00846Q9NV44 126 aa2.51□□□□□ -2.01
PCF11-202ENST00000528336 NDUFA1O15239 70 aa2.5□□□□□ -2.01
PCF11-202ENST00000528336 KRTAP12-4P60329 112 aa2.5□□□□□ -2.01
PCF11-202ENST00000528336 Q6ZSA8 131 aa2.5□□□□□ -2.01
PCF11-202ENST00000528336 Q8IZM0 81 aa2.5□□□□□ -2.01
PCF11-202ENST00000528336 SNURFQ9Y675 71 aa2.5□□□□□ -2.01
PCF11-202ENST00000528336 RYR1P21817 5038 aa2.5□□□□□ -2.01
PCF11-202ENST00000528336 APOBP04114 4563 aaKnown RBP2.49□□□□□ -2.01
PCF11-202ENST00000528336 TRBV30A0A0K0K1B3 111 aa2.49□□□□□ -2.01
PCF11-202ENST00000528336 UNQ6190/PRO20217Q6UXQ8 127 aa2.49□□□□□ -2.01
PCF11-202ENST00000528336 MUSTN1Q8IVN3 82 aa2.49□□□□□ -2.01
PCF11-202ENST00000528336 TOMM7Q9P0U1 55 aa2.49□□□□□ -2.01
PCF11-202ENST00000528336 HERC2O95714 4834 aa2.48□□□□□ -2.01
PCF11-202ENST00000528336 HSPG2P98160 4391 aa2.48□□□□□ -2.01
PCF11-202ENST00000528336 C3orf79P0CE67 100 aa2.48□□□□□ -2.01
PCF11-202ENST00000528336 COX8AP10176 69 aa2.48□□□□□ -2.01
PCF11-202ENST00000528336 C6orf48Q9UBA6 75 aa2.48□□□□□ -2.01
PCF11-202ENST00000528336 DNAH8Q96JB1 4490 aa2.47□□□□□ -2.01
PCF11-202ENST00000528336 A0A096LNI7 61 aa2.47□□□□□ -2.01
PCF11-202ENST00000528336 A0A087WVE0 104 aa2.46□□□□□ -2.02
PCF11-202ENST00000528336 HAMPP81172 84 aa2.46□□□□□ -2.02
PCF11-202ENST00000528336 COX17Q14061 63 aa2.46□□□□□ -2.02
PCF11-202ENST00000528336 KRTAP13-4Q3LI77 160 aa2.46□□□□□ -2.02
PCF11-202ENST00000528336 ATP5EP2Q5VTU8 51 aa2.46□□□□□ -2.02
PCF11-202ENST00000528336 LINC00472Q9H8W2 130 aa2.46□□□□□ -2.02
PCF11-202ENST00000528336 TRBV7-4A0A0J9YYF1 115 aa2.45□□□□□ -2.02
PCF11-202ENST00000528336 FAT1Q14517 4588 aa2.45□□□□□ -2.02
PCF11-202ENST00000528336 PCLOQ9Y6V0 5065 aa2.44□□□□□ -2.02
PCF11-202ENST00000528336 Q6ZQY7 126 aa2.44□□□□□ -2.02
PCF11-202ENST00000528336 SMR3BP02814 79 aaPredicted RBP2.43□□□□□ -2.02
PCF11-202ENST00000528336 LINC00158P58513 81 aa2.43□□□□□ -2.02
PCF11-202ENST00000528336 Q5VSD8 79 aa2.43□□□□□ -2.02
PCF11-202ENST00000528336 SPATA8Q6RVD6 105 aa2.43□□□□□ -2.02
PCF11-202ENST00000528336 ABCA13Q86UQ4 5058 aa2.43□□□□□ -2.02
PCF11-202ENST00000528336 SRRM2Q9UQ35 2752 aaKnown RBP2.43□□□□□ -2.02
PCF11-202ENST00000528336 KRTAP10-4P60372 401 aaPredicted RBP2.42□□□□□ -2.02
PCF11-202ENST00000528336 OBSCN-AS1Q96MR7 158 aa2.42□□□□□ -2.02
PCF11-202ENST00000528336 VPS13BQ7Z7G8 4022 aa2.41□□□□□ -2.02
PCF11-202ENST00000528336 LINC00308Q8TCZ7 52 aa2.39□□□□□ -2.03
PCF11-202ENST00000528336 NCR3O14931 201 aa2.38□□□□□ -2.03
PCF11-202ENST00000528336 ACYP2P14621 99 aa2.38□□□□□ -2.03
PCF11-202ENST00000528336 SPINK7P58062 85 aa2.38□□□□□ -2.03
PCF11-202ENST00000528336 SPINK6Q6UWN8 80 aa2.38□□□□□ -2.03
PCF11-202ENST00000528336 KCNQ1DNQ9H478 68 aa2.38□□□□□ -2.03
PCF11-202ENST00000528336 FLG2Q5D862 2391 aaPredicted RBP2.38□□□□□ -2.03
PCF11-202ENST00000528336 MYCBP2O75592 4640 aa2.37□□□□□ -2.03
PCF11-202ENST00000528336 H0Y9P7 68 aa2.37□□□□□ -2.03
PCF11-202ENST00000528336 SPRR1AP35321 89 aa2.36□□□□□ -2.03
PCF11-202ENST00000528336 PKHD1L1Q86WI1 4243 aa2.36□□□□□ -2.03
PCF11-202ENST00000528336 DMBT1Q9UGM3 2413 aaPredicted RBP2.36□□□□□ -2.03
PCF11-202ENST00000528336 ETDCA0A1B0GVM5 59 aa2.35□□□□□ -2.03
PCF11-202ENST00000528336 KRTAP5-8O75690 187 aa2.35□□□□□ -2.03
PCF11-202ENST00000528336 PRLHP81277 87 aa2.34□□□□□ -2.03
PCF11-202ENST00000528336 PCOTHQ58A44 107 aa2.34□□□□□ -2.03
PCF11-202ENST00000528336 Q6ZRX8 168 aa2.34□□□□□ -2.03
PCF11-202ENST00000528336 LRP1Q07954 4544 aaKnown RBP2.33□□□□□ -2.04
PCF11-202ENST00000528336 SMIM11BQ8TCY0 68 aa2.33□□□□□ -2.04
PCF11-202ENST00000528336 PLAC4Q8WY50 150 aa2.33□□□□□ -2.04
PCF11-202ENST00000528336 FAT3Q8TDW7 4589 aa2.32□□□□□ -2.04
PCF11-202ENST00000528336 MT1HL1P0DM35 61 aa2.32□□□□□ -2.04
PCF11-202ENST00000528336 COX7BP24311 80 aa2.32□□□□□ -2.04
PCF11-202ENST00000528336 LINC00575Q6W349 94 aa2.32□□□□□ -2.04
PCF11-202ENST00000528336 HERC1Q15751 4861 aa2.31□□□□□ -2.04
PCF11-202ENST00000528336 ATXN8Q156A1 80 aa2.31□□□□□ -2.04
PCF11-202ENST00000528336 NDUFB1O75438 58 aa2.3□□□□□ -2.04
PCF11-202ENST00000528336 TNXBP22105 4242 aa2.3□□□□□ -2.04
PCF11-202ENST00000528336 H0YGX0 51 aa2.29□□□□□ -2.04
PCF11-202ENST00000528336 SPRR1BP22528 89 aa2.29□□□□□ -2.04
PCF11-202ENST00000528336 IGLV5-48A0A075B6I7 105 aa2.28□□□□□ -2.04
PCF11-202ENST00000528336 DEFB105AQ8NG35 78 aa2.27□□□□□ -2.05
PCF11-202ENST00000528336 HMCN2Q8NDA2 5059 aa2.27□□□□□ -2.05
PCF11-202ENST00000528336 SSBP3-AS1Q7Z2R9 100 aa2.26□□□□□ -2.05
PCF11-202ENST00000528336 RPL37P61927 97 aaKnown RBP2.25□□□□□ -2.05
PCF11-202ENST00000528336 SPINK1P00995 79 aa2.24□□□□□ -2.05
PCF11-202ENST00000528336 RPS29P62273 56 aaKnown RBP2.24□□□□□ -2.05
PCF11-202ENST00000528336 NREPQ16612 68 aa2.24□□□□□ -2.05
PCF11-202ENST00000528336 KRTAP21-2Q3LI59 83 aa2.24□□□□□ -2.05
PCF11-202ENST00000528336 A0A1B0GU69 56 aa2.21□□□□□ -2.06
PCF11-202ENST00000528336 KRTAP12-1P59990 96 aa2.21□□□□□ -2.06
PCF11-202ENST00000528336 UBR4Q5T4S7 5183 aa2.21□□□□□ -2.06
PCF11-202ENST00000528336 LRP2P98164 4655 aa2.19□□□□□ -2.06
PCF11-202ENST00000528336 LPAP08519 4548 aa2.15□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms