RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 CYSTM1Q9H1C7 97 aa3.38□□□□□ -1.87
NPHP3-211ENST00000515289 VPS13BQ7Z7G8 4022 aa3.38□□□□□ -1.87
NPHP3-211ENST00000515289 HCG22E2RYF7 251 aa3.37□□□□□ -1.87
NPHP3-211ENST00000515289 FAT1Q14517 4588 aa3.37□□□□□ -1.87
NPHP3-211ENST00000515289 Q1T7F1 81 aa3.36□□□□□ -1.87
NPHP3-211ENST00000515289 ASB16-AS1Q495Z4 193 aa3.36□□□□□ -1.87
NPHP3-211ENST00000515289 RYR3Q15413 4870 aa3.35□□□□□ -1.87
NPHP3-211ENST00000515289 MMP24-AS1A0A0U1RRL7 71 aa3.35□□□□□ -1.87
NPHP3-211ENST00000515289 SPINK6Q6UWN8 80 aa3.35□□□□□ -1.87
NPHP3-211ENST00000515289 SMR3BP02814 79 aaPredicted RBP3.34□□□□□ -1.87
NPHP3-211ENST00000515289 WFDC13Q8IUB5 93 aa3.34□□□□□ -1.87
NPHP3-211ENST00000515289 C20orf197Q8N268 126 aa3.34□□□□□ -1.87
NPHP3-211ENST00000515289 KLKP1Q107X0 134 aa3.33□□□□□ -1.88
NPHP3-211ENST00000515289 RYR1P21817 5038 aa3.33□□□□□ -1.88
NPHP3-211ENST00000515289 PKHD1L1Q86WI1 4243 aa3.33□□□□□ -1.88
NPHP3-211ENST00000515289 CASC2Q6XLA1 102 aa3.32□□□□□ -1.88
NPHP3-211ENST00000515289 H7BZZ5 65 aa3.31□□□□□ -1.88
NPHP3-211ENST00000515289 NDUFB1O75438 58 aa3.31□□□□□ -1.88
NPHP3-211ENST00000515289 ZCCHC13Q8WW36 166 aaKnown RBP3.31□□□□□ -1.88
NPHP3-211ENST00000515289 SNURFQ9Y675 71 aa3.31□□□□□ -1.88
NPHP3-211ENST00000515289 HSPG2P98160 4391 aa3.3□□□□□ -1.88
NPHP3-211ENST00000515289 KRTAP13-3Q3SY46 172 aa3.29□□□□□ -1.88
NPHP3-211ENST00000515289 RPS29P62273 56 aaKnown RBP3.28□□□□□ -1.88
NPHP3-211ENST00000515289 LIMD2Q9BT23 127 aa3.28□□□□□ -1.88
NPHP3-211ENST00000515289 SPINK1P00995 79 aa3.27□□□□□ -1.89
NPHP3-211ENST00000515289 MRPL34Q9BQ48 92 aaKnown RBP3.27□□□□□ -1.89
NPHP3-211ENST00000515289 NDUFC1O43677 76 aa3.26□□□□□ -1.89
NPHP3-211ENST00000515289 SPAG11AQ6PDA7 123 aa3.26□□□□□ -1.89
NPHP3-211ENST00000515289 A6NN06 94 aa3.25□□□□□ -1.89
NPHP3-211ENST00000515289 H0Y9P7 68 aa3.25□□□□□ -1.89
NPHP3-211ENST00000515289 Q5VSD8 79 aa3.25□□□□□ -1.89
NPHP3-211ENST00000515289 TRAV22A0A0B4J277 110 aa3.24□□□□□ -1.89
NPHP3-211ENST00000515289 FP248Q71RG6 208 aaPredicted RBP3.24□□□□□ -1.89
NPHP3-211ENST00000515289 TP53AIP1Q9HCN2 124 aa3.24□□□□□ -1.89
NPHP3-211ENST00000515289 KIAA1109Q2LD37 5005 aa3.24□□□□□ -1.89
NPHP3-211ENST00000515289 KRTAP10-7P60409 375 aaPredicted RBP3.23□□□□□ -1.89
NPHP3-211ENST00000515289 KRTAP10-8P60410 259 aa3.23□□□□□ -1.89
NPHP3-211ENST00000515289 LCE1EQ5T753 118 aa3.23□□□□□ -1.89
NPHP3-211ENST00000515289 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.23□□□□□ -1.89
NPHP3-211ENST00000515289 FAT3Q8TDW7 4589 aa3.23□□□□□ -1.89
NPHP3-211ENST00000515289 LINC00208Q96KT6 92 aa3.23□□□□□ -1.89
NPHP3-211ENST00000515289 ATP5EP56381 51 aaPredicted RBP3.22□□□□□ -1.89
NPHP3-211ENST00000515289 TNXBP22105 4242 aa3.22□□□□□ -1.89
NPHP3-211ENST00000515289 EPPK1P58107 5090 aaKnown RBP3.22□□□□□ -1.89
NPHP3-211ENST00000515289 LRP1Q07954 4544 aaKnown RBP3.21□□□□□ -1.9
NPHP3-211ENST00000515289 MIR22HGQ0VDD5 57 aa3.21□□□□□ -1.9
NPHP3-211ENST00000515289 KRTAP5-11Q6L8G4 156 aa3.2□□□□□ -1.9
NPHP3-211ENST00000515289 SERP1Q9Y6X1 66 aa3.2□□□□□ -1.9
NPHP3-211ENST00000515289 FLG2Q5D862 2391 aaPredicted RBP3.2□□□□□ -1.9
NPHP3-211ENST00000515289 MT1HL1P0DM35 61 aa3.19□□□□□ -1.9
NPHP3-211ENST00000515289 ATP11AUNQ6ZP68 121 aa3.19□□□□□ -1.9
NPHP3-211ENST00000515289 COA5Q86WW8 74 aa3.19□□□□□ -1.9
NPHP3-211ENST00000515289 CYP4F30PQ9H0H9 118 aa3.19□□□□□ -1.9
NPHP3-211ENST00000515289 LOC101927531A0A1B0GV80 90 aa3.17□□□□□ -1.9
NPHP3-211ENST00000515289 PCOTHQ58A44 107 aa3.16□□□□□ -1.9
NPHP3-211ENST00000515289 BIRC6Q9NR09 4857 aa3.15□□□□□ -1.9
NPHP3-211ENST00000515289 C9orf92A6NGG3 77 aa3.14□□□□□ -1.91
NPHP3-211ENST00000515289 HERC2O95714 4834 aa3.13□□□□□ -1.91
NPHP3-211ENST00000515289 MYCBP2O75592 4640 aa3.12□□□□□ -1.91
NPHP3-211ENST00000515289 DMBT1Q9UGM3 2413 aaPredicted RBP3.09□□□□□ -1.91
NPHP3-211ENST00000515289 KRTAP10-10P60014 251 aa3.09□□□□□ -1.91
NPHP3-211ENST00000515289 DMAC1Q96GE9 116 aa3.09□□□□□ -1.91
NPHP3-211ENST00000515289 ABCA13Q86UQ4 5058 aa3.08□□□□□ -1.92
NPHP3-211ENST00000515289 RPL37P61927 97 aaKnown RBP3.06□□□□□ -1.92
NPHP3-211ENST00000515289 KRTAP13-4Q3LI77 160 aa3.06□□□□□ -1.92
NPHP3-211ENST00000515289 CDC42SE1Q9NRR8 79 aa3.06□□□□□ -1.92
NPHP3-211ENST00000515289 LCE3DQ9BYE3 92 aa3.05□□□□□ -1.92
NPHP3-211ENST00000515289 KRTAP9-6A8MVA2 160 aa3.04□□□□□ -1.92
NPHP3-211ENST00000515289 ACYP2P14621 99 aa3.03□□□□□ -1.92
NPHP3-211ENST00000515289 SPINK7P58062 85 aa3.03□□□□□ -1.92
NPHP3-211ENST00000515289 INE1O15225 51 aa3.01□□□□□ -1.93
NPHP3-211ENST00000515289 LINC01558Q9Y6Z2 57 aa3□□□□□ -1.93
NPHP3-211ENST00000515289 Q5VV11 94 aa2.98□□□□□ -1.93
NPHP3-211ENST00000515289 CSAG1Q6PB30 78 aa2.98□□□□□ -1.93
NPHP3-211ENST00000515289 COX6B2Q6YFQ2 88 aa2.98□□□□□ -1.93
NPHP3-211ENST00000515289 CHKB-CPT1BH3BT56 60 aa2.97□□□□□ -1.93
NPHP3-211ENST00000515289 LRP2P98164 4655 aa2.97□□□□□ -1.93
NPHP3-211ENST00000515289 PRR15LQ9BU68 103 aa2.96□□□□□ -1.94
NPHP3-211ENST00000515289 PCLOQ9Y6V0 5065 aa2.96□□□□□ -1.94
NPHP3-211ENST00000515289 LPAP08519 4548 aa2.95□□□□□ -1.94
NPHP3-211ENST00000515289 MUC17Q685J3 4493 aa2.94□□□□□ -1.94
NPHP3-211ENST00000515289 KRTAP6-3Q3LI67 103 aa2.93□□□□□ -1.94
NPHP3-211ENST00000515289 HERC1Q15751 4861 aa2.91□□□□□ -1.94
NPHP3-211ENST00000515289 KRTAP4-1Q9BYQ7 146 aa2.91□□□□□ -1.94
NPHP3-211ENST00000515289 HMCN2Q8NDA2 5059 aa2.9□□□□□ -1.95
NPHP3-211ENST00000515289 SPTSSBQ8NFR3 76 aa2.89□□□□□ -1.95
NPHP3-211ENST00000515289 A0A1B0GU69 56 aa2.88□□□□□ -1.95
NPHP3-211ENST00000515289 KRTAP12-1P59990 96 aa2.88□□□□□ -1.95
NPHP3-211ENST00000515289 H1FX-AS1Q4G0G2 97 aa2.88□□□□□ -1.95
NPHP3-211ENST00000515289 KRTAP19-2Q3LHN2 52 aa2.87□□□□□ -1.95
NPHP3-211ENST00000515289 S4R3F8 94 aa2.87□□□□□ -1.95
NPHP3-211ENST00000515289 SPATA8Q6RVD6 105 aa2.82□□□□□ -1.96
NPHP3-211ENST00000515289 UQCR11O14957 56 aa2.81□□□□□ -1.96
NPHP3-211ENST00000515289 KRTAP5-1Q6L8H4 278 aa2.81□□□□□ -1.96
NPHP3-211ENST00000515289 H0YAA0 97 aa2.79□□□□□ -1.96
NPHP3-211ENST00000515289 PP632Q6XCG6 107 aa2.79□□□□□ -1.96
NPHP3-211ENST00000515289 FLGP20930 4061 aaPredicted RBP2.75□□□□□ -1.97
NPHP3-211ENST00000515289 RNF213Q63HN8 5207 aa2.72□□□□□ -1.97
NPHP3-211ENST00000515289 KRTAP5-4Q6L8H1 288 aa2.7□□□□□ -1.98
NPHP3-211ENST00000515289 KRTAP4-4Q9BYR3 166 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms