RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 DNAH7Q8WXX0 4024 aa4.54□□□□□ -1.68
PDLIM3-209ENST00000514142 CRCT1Q9UGL9 99 aa4.53□□□□□ -1.68
PDLIM3-209ENST00000514142 KRTAP12-3P60328 96 aa4.5□□□□□ -1.69
PDLIM3-209ENST00000514142 FRAS1Q86XX4 4008 aa4.49□□□□□ -1.69
PDLIM3-209ENST00000514142 DNHD1Q96M86 4753 aa4.48□□□□□ -1.69
PDLIM3-209ENST00000514142 LCE3AQ5TA76 89 aa4.48□□□□□ -1.69
PDLIM3-209ENST00000514142 DNAH9Q9NYC9 4486 aa4.47□□□□□ -1.69
PDLIM3-209ENST00000514142 DNAH3Q8TD57 4116 aa4.47□□□□□ -1.69
PDLIM3-209ENST00000514142 LORP23490 312 aaPredicted RBP4.47□□□□□ -1.69
PDLIM3-209ENST00000514142 DNAH6Q9C0G6 4158 aa4.46□□□□□ -1.69
PDLIM3-209ENST00000514142 CMYA5Q8N3K9 4069 aa4.46□□□□□ -1.7
PDLIM3-209ENST00000514142 KRTAP4-5Q9BYR2 181 aa4.46□□□□□ -1.7
PDLIM3-209ENST00000514142 PRKDCP78527 4128 aaKnown RBP4.45□□□□□ -1.7
PDLIM3-209ENST00000514142 KRTAP23-1A1A580 65 aa4.44□□□□□ -1.7
PDLIM3-209ENST00000514142 KRTAP10-4P60372 401 aaPredicted RBP4.43□□□□□ -1.7
PDLIM3-209ENST00000514142 ALMS1Q8TCU4 4167 aa4.43□□□□□ -1.7
PDLIM3-209ENST00000514142 PLECQ15149 4684 aaKnown RBP4.41□□□□□ -1.7
PDLIM3-209ENST00000514142 DNAH11Q96DT5 4516 aa4.37□□□□□ -1.71
PDLIM3-209ENST00000514142 HECTD4Q9Y4D8 3996 aa4.37□□□□□ -1.71
PDLIM3-209ENST00000514142 DNAH5Q8TE73 4624 aa4.36□□□□□ -1.71
PDLIM3-209ENST00000514142 DNAH10Q8IVF4 4471 aa4.36□□□□□ -1.71
PDLIM3-209ENST00000514142 VPS13DQ5THJ4 4388 aa4.33□□□□□ -1.72
PDLIM3-209ENST00000514142 STARD9Q9P2P6 4700 aa4.29□□□□□ -1.72
PDLIM3-209ENST00000514142 KRTAP10-5P60370 271 aa4.28□□□□□ -1.72
PDLIM3-209ENST00000514142 DYNC2H1Q8NCM8 4307 aaKnown RBP4.28□□□□□ -1.72
PDLIM3-209ENST00000514142 FAT1Q14517 4588 aa4.26□□□□□ -1.73
PDLIM3-209ENST00000514142 LCE2DQ5TA82 110 aaPredicted RBP4.23□□□□□ -1.73
PDLIM3-209ENST00000514142 DYNC1H1Q14204 4646 aaKnown RBP4.2□□□□□ -1.74
PDLIM3-209ENST00000514142 KMT2AQ03164 3969 aa4.19□□□□□ -1.74
PDLIM3-209ENST00000514142 DNAH17Q9UFH2 4485 aa4.18□□□□□ -1.74
PDLIM3-209ENST00000514142 LRP1BQ9NZR2 4599 aa4.17□□□□□ -1.74
PDLIM3-209ENST00000514142 DNAH8Q96JB1 4490 aa4.15□□□□□ -1.74
PDLIM3-209ENST00000514142 RYR1P21817 5038 aa4.15□□□□□ -1.75
PDLIM3-209ENST00000514142 DNAH2Q9P225 4427 aa4.12□□□□□ -1.75
PDLIM3-209ENST00000514142 KIAA1109Q2LD37 5005 aa4.1□□□□□ -1.75
PDLIM3-209ENST00000514142 KRTAP4-1Q9BYQ7 146 aa4.08□□□□□ -1.76
PDLIM3-209ENST00000514142 KRTAP8-1Q8IUC2 63 aa4.07□□□□□ -1.76
PDLIM3-209ENST00000514142 MYCBP2O75592 4640 aa4.06□□□□□ -1.76
PDLIM3-209ENST00000514142 SACSQ9NZJ4 4579 aa4.06□□□□□ -1.76
PDLIM3-209ENST00000514142 VPS13BQ7Z7G8 4022 aa4.01□□□□□ -1.77
PDLIM3-209ENST00000514142 PKHD1P08F94 4074 aa4.01□□□□□ -1.77
PDLIM3-209ENST00000514142 FAT2Q9NYQ8 4349 aa4□□□□□ -1.77
PDLIM3-209ENST00000514142 RYR3Q15413 4870 aa4□□□□□ -1.77
PDLIM3-209ENST00000514142 SPRR2GQ9BYE4 73 aa3.97□□□□□ -1.77
PDLIM3-209ENST00000514142 FAT3Q8TDW7 4589 aa3.97□□□□□ -1.77
PDLIM3-209ENST00000514142 LRP1Q07954 4544 aaKnown RBP3.96□□□□□ -1.77
PDLIM3-209ENST00000514142 APOBP04114 4563 aaKnown RBP3.95□□□□□ -1.78
PDLIM3-209ENST00000514142 KRTAP19-5Q3LI72 72 aa3.95□□□□□ -1.78
PDLIM3-209ENST00000514142 MT2AP02795 61 aa3.95□□□□□ -1.78
PDLIM3-209ENST00000514142 MT1HP80294 61 aa3.95□□□□□ -1.78
PDLIM3-209ENST00000514142 KRTAP17-1Q9BYP8 105 aa3.94□□□□□ -1.78
PDLIM3-209ENST00000514142 LCE3CQ5T5A8 94 aa3.93□□□□□ -1.78
PDLIM3-209ENST00000514142 HYDINQ4G0P3 5121 aa3.89□□□□□ -1.79
PDLIM3-209ENST00000514142 MT1FP04733 61 aa3.88□□□□□ -1.79
PDLIM3-209ENST00000514142 PKHD1L1Q86WI1 4243 aa3.86□□□□□ -1.79
PDLIM3-209ENST00000514142 RYR2Q92736 4967 aa3.83□□□□□ -1.8
PDLIM3-209ENST00000514142 TNXBP22105 4242 aa3.83□□□□□ -1.8
PDLIM3-209ENST00000514142 PKD1P98161 4303 aa3.81□□□□□ -1.8
PDLIM3-209ENST00000514142 KRTAP19-4Q3LI73 84 aa3.8□□□□□ -1.8
PDLIM3-209ENST00000514142 SPRR2FQ96RM1 72 aa3.8□□□□□ -1.8
PDLIM3-209ENST00000514142 LRP2P98164 4655 aa3.79□□□□□ -1.8
PDLIM3-209ENST00000514142 HERC2O95714 4834 aa3.79□□□□□ -1.8
PDLIM3-209ENST00000514142 HSPG2P98160 4391 aa3.77□□□□□ -1.81
PDLIM3-209ENST00000514142 KRTAP10-7P60409 375 aaPredicted RBP3.76□□□□□ -1.81
PDLIM3-209ENST00000514142 KMT2CQ8NEZ4 4911 aaKnown RBP3.76□□□□□ -1.81
PDLIM3-209ENST00000514142 KRTAP12-4P60329 112 aa3.71□□□□□ -1.82
PDLIM3-209ENST00000514142 KRTAP19-1Q8IUB9 90 aa3.71□□□□□ -1.82
PDLIM3-209ENST00000514142 SPRR5A0A1B0GTR4 108 aa3.7□□□□□ -1.82
PDLIM3-209ENST00000514142 LCE3BQ5TA77 95 aa3.67□□□□□ -1.82
PDLIM3-209ENST00000514142 KRTAP19-8Q3LI54 63 aa3.64□□□□□ -1.83
PDLIM3-209ENST00000514142 MT1XP80297 61 aa3.63□□□□□ -1.83
PDLIM3-209ENST00000514142 SYNE1Q8NF91 8797 aaKnown RBP3.62□□□□□ -1.83
PDLIM3-209ENST00000514142 LPAP08519 4548 aa3.62□□□□□ -1.83
PDLIM3-209ENST00000514142 BIRC6Q9NR09 4857 aa3.6□□□□□ -1.83
PDLIM3-209ENST00000514142 MT1GP13640 62 aa3.6□□□□□ -1.83
PDLIM3-209ENST00000514142 PCLOQ9Y6V0 5065 aa3.58□□□□□ -1.84
PDLIM3-209ENST00000514142 EPPK1P58107 5090 aaKnown RBP3.57□□□□□ -1.84
PDLIM3-209ENST00000514142 MT1BP07438 61 aa3.55□□□□□ -1.84
PDLIM3-209ENST00000514142 KRTAP4-8A0A0G2JLE6 195 aa3.54□□□□□ -1.84
PDLIM3-209ENST00000514142 KRTAP4-8Q9BYQ9 185 aa3.54□□□□□ -1.84
PDLIM3-209ENST00000514142 SPRR2EP22531 72 aa3.52□□□□□ -1.85
PDLIM3-209ENST00000514142 SPRR2BP35325 72 aa3.52□□□□□ -1.85
PDLIM3-209ENST00000514142 SPRR2AP35326 72 aa3.52□□□□□ -1.85
PDLIM3-209ENST00000514142 ABCA13Q86UQ4 5058 aa3.52□□□□□ -1.85
PDLIM3-209ENST00000514142 HERC1Q15751 4861 aa3.52□□□□□ -1.85
PDLIM3-209ENST00000514142 LCE2CQ5TA81 110 aa3.5□□□□□ -1.85
PDLIM3-209ENST00000514142 LCE3DQ9BYE3 92 aa3.49□□□□□ -1.85
PDLIM3-209ENST00000514142 KRTAP9-8Q9BYQ0 159 aa3.47□□□□□ -1.85
PDLIM3-209ENST00000514142 FLGP20930 4061 aaPredicted RBP3.46□□□□□ -1.86
PDLIM3-209ENST00000514142 LCE3EQ5T5B0 92 aa3.44□□□□□ -1.86
PDLIM3-209ENST00000514142 KRTAP4-7Q9BYR0 210 aa3.43□□□□□ -1.86
PDLIM3-209ENST00000514142 SPRR2DP22532 72 aa3.4□□□□□ -1.86
PDLIM3-209ENST00000514142 KRTAP19-2Q3LHN2 52 aa3.4□□□□□ -1.87
PDLIM3-209ENST00000514142 LCE2BO14633 110 aa3.39□□□□□ -1.87
PDLIM3-209ENST00000514142 KRTAP9-3Q9BYQ3 159 aa3.38□□□□□ -1.87
PDLIM3-209ENST00000514142 MUC17Q685J3 4493 aa3.36□□□□□ -1.87
PDLIM3-209ENST00000514142 FSIP2Q5CZC0 6907 aa3.35□□□□□ -1.87
PDLIM3-209ENST00000514142 RNF213Q63HN8 5207 aa3.32□□□□□ -1.88
PDLIM3-209ENST00000514142 UBR4Q5T4S7 5183 aa3.32□□□□□ -1.88
PDLIM3-209ENST00000514142 MT1LQ93083 61 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms