RNA–Protein interactions for RNA: ENST00000508474.5

UBE2D3-224, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 4,819 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-224ENST00000508474 MEGF8Q7Z7M0 2845 aa3.11□□□□□ -1.91
UBE2D3-224ENST00000508474 MT1HL1P0DM35 61 aa3.11□□□□□ -1.91
UBE2D3-224ENST00000508474 FBN3Q75N90 2809 aa3.11□□□□□ -1.91
UBE2D3-224ENST00000508474 VPS13DQ5THJ4 4388 aa3.11□□□□□ -1.91
UBE2D3-224ENST00000508474 PRKDCP78527 4128 aaKnown RBP3.11□□□□□ -1.91
UBE2D3-224ENST00000508474 KRTAP10-4P60372 401 aaPredicted RBP3.11□□□□□ -1.91
UBE2D3-224ENST00000508474 SRRM2Q9UQ35 2752 aaKnown RBP3.1□□□□□ -1.91
UBE2D3-224ENST00000508474 COL7A1Q02388 2944 aa3.08□□□□□ -1.92
UBE2D3-224ENST00000508474 KRTAP19-4Q3LI73 84 aa3.08□□□□□ -1.92
UBE2D3-224ENST00000508474 DNAH7Q8WXX0 4024 aa3.07□□□□□ -1.92
UBE2D3-224ENST00000508474 FRAS1Q86XX4 4008 aa3.06□□□□□ -1.92
UBE2D3-224ENST00000508474 ALMS1Q8TCU4 4167 aa3.06□□□□□ -1.92
UBE2D3-224ENST00000508474 LORP23490 312 aaPredicted RBP3.06□□□□□ -1.92
UBE2D3-224ENST00000508474 DNAH6Q9C0G6 4158 aa3.06□□□□□ -1.92
UBE2D3-224ENST00000508474 DNAH9Q9NYC9 4486 aa3.04□□□□□ -1.92
UBE2D3-224ENST00000508474 DNAH3Q8TD57 4116 aa3.02□□□□□ -1.93
UBE2D3-224ENST00000508474 CMYA5Q8N3K9 4069 aa3.01□□□□□ -1.93
UBE2D3-224ENST00000508474 MYCBP2O75592 4640 aa3□□□□□ -1.93
UBE2D3-224ENST00000508474 TNXBP22105 4242 aa2.98□□□□□ -1.93
UBE2D3-224ENST00000508474 PLECQ15149 4684 aaKnown RBP2.98□□□□□ -1.93
UBE2D3-224ENST00000508474 DNAH10Q8IVF4 4471 aa2.97□□□□□ -1.93
UBE2D3-224ENST00000508474 HECTD4Q9Y4D8 3996 aa2.96□□□□□ -1.93
UBE2D3-224ENST00000508474 STARD9Q9P2P6 4700 aa2.94□□□□□ -1.94
UBE2D3-224ENST00000508474 DNAH2Q9P225 4427 aa2.94□□□□□ -1.94
UBE2D3-224ENST00000508474 DNAH1Q9P2D7 4330 aa2.92□□□□□ -1.94
UBE2D3-224ENST00000508474 LCE2CQ5TA81 110 aa2.92□□□□□ -1.94
UBE2D3-224ENST00000508474 DNAH11Q96DT5 4516 aa2.91□□□□□ -1.94
UBE2D3-224ENST00000508474 CRCT1Q9UGL9 99 aa2.91□□□□□ -1.94
UBE2D3-224ENST00000508474 DNHD1Q96M86 4753 aa2.91□□□□□ -1.94
UBE2D3-224ENST00000508474 KRTAP10-5P60370 271 aa2.9□□□□□ -1.95
UBE2D3-224ENST00000508474 DYNC2H1Q8NCM8 4307 aaKnown RBP2.87□□□□□ -1.95
UBE2D3-224ENST00000508474 DNAH17Q9UFH2 4485 aa2.87□□□□□ -1.95
UBE2D3-224ENST00000508474 LCE2BO14633 110 aa2.86□□□□□ -1.95
UBE2D3-224ENST00000508474 KMT2AQ03164 3969 aa2.86□□□□□ -1.95
UBE2D3-224ENST00000508474 KRTAP8-1Q8IUC2 63 aa2.86□□□□□ -1.95
UBE2D3-224ENST00000508474 SPRR2GQ9BYE4 73 aa2.86□□□□□ -1.95
UBE2D3-224ENST00000508474 SPRR5A0A1B0GTR4 108 aa2.85□□□□□ -1.95
UBE2D3-224ENST00000508474 LCE3CQ5T5A8 94 aa2.81□□□□□ -1.96
UBE2D3-224ENST00000508474 DNAH8Q96JB1 4490 aa2.79□□□□□ -1.96
UBE2D3-224ENST00000508474 HSPG2P98160 4391 aa2.79□□□□□ -1.96
UBE2D3-224ENST00000508474 DNAH5Q8TE73 4624 aa2.78□□□□□ -1.96
UBE2D3-224ENST00000508474 LRP1BQ9NZR2 4599 aa2.77□□□□□ -1.97
UBE2D3-224ENST00000508474 KRTAP4-1Q9BYQ7 146 aa2.77□□□□□ -1.97
UBE2D3-224ENST00000508474 KRTAP4-5Q9BYR2 181 aa2.76□□□□□ -1.97
UBE2D3-224ENST00000508474 DYNC1H1Q14204 4646 aaKnown RBP2.75□□□□□ -1.97
UBE2D3-224ENST00000508474 HYDINQ4G0P3 5121 aa2.74□□□□□ -1.97
UBE2D3-224ENST00000508474 KRTAP17-1Q9BYP8 105 aa2.74□□□□□ -1.97
UBE2D3-224ENST00000508474 KRTAP19-5Q3LI72 72 aa2.73□□□□□ -1.97
UBE2D3-224ENST00000508474 VPS13BQ7Z7G8 4022 aa2.72□□□□□ -1.97
UBE2D3-224ENST00000508474 MT2AP02795 61 aa2.71□□□□□ -1.97
UBE2D3-224ENST00000508474 FAT1Q14517 4588 aa2.71□□□□□ -1.98
UBE2D3-224ENST00000508474 KRTAP10-7P60409 375 aaPredicted RBP2.71□□□□□ -1.98
UBE2D3-224ENST00000508474 FAT2Q9NYQ8 4349 aa2.7□□□□□ -1.98
UBE2D3-224ENST00000508474 SACSQ9NZJ4 4579 aa2.69□□□□□ -1.98
UBE2D3-224ENST00000508474 MT1HP80294 61 aa2.69□□□□□ -1.98
UBE2D3-224ENST00000508474 PKHD1P08F94 4074 aa2.67□□□□□ -1.98
UBE2D3-224ENST00000508474 PKD1P98161 4303 aa2.67□□□□□ -1.98
UBE2D3-224ENST00000508474 RYR2Q92736 4967 aa2.66□□□□□ -1.98
UBE2D3-224ENST00000508474 MT1FP04733 61 aa2.65□□□□□ -1.99
UBE2D3-224ENST00000508474 KRTAP19-8Q3LI54 63 aa2.64□□□□□ -1.99
UBE2D3-224ENST00000508474 APOBP04114 4563 aaKnown RBP2.63□□□□□ -1.99
UBE2D3-224ENST00000508474 HERC1Q15751 4861 aa2.63□□□□□ -1.99
UBE2D3-224ENST00000508474 KIAA1109Q2LD37 5005 aa2.61□□□□□ -1.99
UBE2D3-224ENST00000508474 KRTAP12-4P60329 112 aa2.6□□□□□ -1.99
UBE2D3-224ENST00000508474 KMT2CQ8NEZ4 4911 aaKnown RBP2.6□□□□□ -1.99
UBE2D3-224ENST00000508474 KRTAP19-1Q8IUB9 90 aa2.6□□□□□ -1.99
UBE2D3-224ENST00000508474 LRP1Q07954 4544 aaKnown RBP2.59□□□□□ -2
UBE2D3-224ENST00000508474 RYR1P21817 5038 aa2.58□□□□□ -2
UBE2D3-224ENST00000508474 RYR3Q15413 4870 aa2.58□□□□□ -2
UBE2D3-224ENST00000508474 MT1XP80297 61 aa2.55□□□□□ -2
UBE2D3-224ENST00000508474 FAT3Q8TDW7 4589 aa2.51□□□□□ -2.01
UBE2D3-224ENST00000508474 SPRR2FQ96RM1 72 aa2.51□□□□□ -2.01
UBE2D3-224ENST00000508474 KRTAP9-9Q9BYP9 154 aa2.49□□□□□ -2.01
UBE2D3-224ENST00000508474 KRTAP9-4Q9BYQ2 154 aa2.49□□□□□ -2.01
UBE2D3-224ENST00000508474 MT1BP07438 61 aa2.48□□□□□ -2.01
UBE2D3-224ENST00000508474 LCE3BQ5TA77 95 aa2.47□□□□□ -2.01
UBE2D3-224ENST00000508474 EPPK1P58107 5090 aaKnown RBP2.45□□□□□ -2.02
UBE2D3-224ENST00000508474 LCE3DQ9BYE3 92 aa2.45□□□□□ -2.02
UBE2D3-224ENST00000508474 LCE3EQ5T5B0 92 aa2.45□□□□□ -2.02
UBE2D3-224ENST00000508474 LRP2P98164 4655 aa2.43□□□□□ -2.02
UBE2D3-224ENST00000508474 SPRR2EP22531 72 aa2.43□□□□□ -2.02
UBE2D3-224ENST00000508474 SPRR2BP35325 72 aa2.43□□□□□ -2.02
UBE2D3-224ENST00000508474 SPRR2AP35326 72 aa2.43□□□□□ -2.02
UBE2D3-224ENST00000508474 MT1GP13640 62 aa2.43□□□□□ -2.02
UBE2D3-224ENST00000508474 HERC2O95714 4834 aa2.42□□□□□ -2.02
UBE2D3-224ENST00000508474 SPRR2DP22532 72 aa2.4□□□□□ -2.02
UBE2D3-224ENST00000508474 KRTAP9-8Q9BYQ0 159 aa2.39□□□□□ -2.03
UBE2D3-224ENST00000508474 BIRC6Q9NR09 4857 aa2.39□□□□□ -2.03
UBE2D3-224ENST00000508474 LPAP08519 4548 aa2.38□□□□□ -2.03
UBE2D3-224ENST00000508474 MT1LQ93083 61 aa2.38□□□□□ -2.03
UBE2D3-224ENST00000508474 ABCA13Q86UQ4 5058 aa2.38□□□□□ -2.03
UBE2D3-224ENST00000508474 LOC100996750A0A140TA64 210 aa2.37□□□□□ -2.03
UBE2D3-224ENST00000508474 KRTAP4-6Q9BYQ5 205 aa2.37□□□□□ -2.03
UBE2D3-224ENST00000508474 KRTAP4-8A0A0G2JLE6 195 aa2.34□□□□□ -2.03
UBE2D3-224ENST00000508474 KRTAP4-8Q9BYQ9 185 aa2.34□□□□□ -2.03
UBE2D3-224ENST00000508474 KRTAP9-3Q9BYQ3 159 aa2.34□□□□□ -2.04
UBE2D3-224ENST00000508474 FLGP20930 4061 aaPredicted RBP2.31□□□□□ -2.04
UBE2D3-224ENST00000508474 KRTAP2-3P0C7H8 128 aa2.3□□□□□ -2.04
UBE2D3-224ENST00000508474 KRTAP2-4Q9BYR9 128 aa2.3□□□□□ -2.04
UBE2D3-224ENST00000508474 KRTAP2-1Q9BYU5 128 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms