RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 Q5VSD8 79 aa2.48□□□□□ -2.01
BRCA1-224ENST00000497488 MYCBP2O75592 4640 aa2.48□□□□□ -2.01
BRCA1-224ENST00000497488 LINC00959A0A1B0GUT2 108 aa2.47□□□□□ -2.01
BRCA1-224ENST00000497488 C7orf77A4D0Y5 90 aa2.47□□□□□ -2.01
BRCA1-224ENST00000497488 F8WEM9 126 aa2.47□□□□□ -2.01
BRCA1-224ENST00000497488 RPL39P62891 51 aaKnown RBP2.47□□□□□ -2.01
BRCA1-224ENST00000497488 SMIM2Q9BVW6 85 aa2.47□□□□□ -2.01
BRCA1-224ENST00000497488 UBE2D4Q9Y2X8 147 aa2.47□□□□□ -2.01
BRCA1-224ENST00000497488 FCER1GP30273 86 aa2.46□□□□□ -2.02
BRCA1-224ENST00000497488 KRTAP10-4P60372 401 aaPredicted RBP2.46□□□□□ -2.02
BRCA1-224ENST00000497488 BVES-AS1Q5T3Y7 98 aa2.45□□□□□ -2.02
BRCA1-224ENST00000497488 LINC00643Q86TS7 51 aa2.45□□□□□ -2.02
BRCA1-224ENST00000497488 PRR15LQ9BU68 103 aa2.45□□□□□ -2.02
BRCA1-224ENST00000497488 FAT3Q8TDW7 4589 aa2.45□□□□□ -2.02
BRCA1-224ENST00000497488 LRP1Q07954 4544 aaKnown RBP2.45□□□□□ -2.02
BRCA1-224ENST00000497488 VPS13BQ7Z7G8 4022 aa2.45□□□□□ -2.02
BRCA1-224ENST00000497488 GVQW2A0A096LPI5 108 aaPredicted RBP2.44□□□□□ -2.02
BRCA1-224ENST00000497488 ACYP1P07311 99 aa2.44□□□□□ -2.02
BRCA1-224ENST00000497488 IGLC3P0DOY3 106 aa2.44□□□□□ -2.02
BRCA1-224ENST00000497488 PLAC4Q8WY50 150 aa2.44□□□□□ -2.02
BRCA1-224ENST00000497488 HMCN2Q8NDA2 5059 aa2.44□□□□□ -2.02
BRCA1-224ENST00000497488 A0A096LNI7 61 aa2.43□□□□□ -2.02
BRCA1-224ENST00000497488 IFI27P40305 119 aaPredicted RBP2.43□□□□□ -2.02
BRCA1-224ENST00000497488 COX6A2Q02221 97 aa2.43□□□□□ -2.02
BRCA1-224ENST00000497488 COX17Q14061 63 aa2.43□□□□□ -2.02
BRCA1-224ENST00000497488 KRTAP13-1Q8IUC0 172 aa2.43□□□□□ -2.02
BRCA1-224ENST00000497488 PKHD1L1Q86WI1 4243 aa2.43□□□□□ -2.02
BRCA1-224ENST00000497488 IGIPA6NJ69 53 aa2.42□□□□□ -2.02
BRCA1-224ENST00000497488 SPRR4Q96PI1 79 aa2.42□□□□□ -2.02
BRCA1-224ENST00000497488 SMCO4Q9NRQ5 59 aa2.42□□□□□ -2.02
BRCA1-224ENST00000497488 H3BUT2 72 aa2.41□□□□□ -2.02
BRCA1-224ENST00000497488 LINC00472Q9H8W2 130 aa2.41□□□□□ -2.02
BRCA1-224ENST00000497488 PLAC8Q9NZF1 115 aa2.41□□□□□ -2.02
BRCA1-224ENST00000497488 SRRM2Q9UQ35 2752 aaKnown RBP2.41□□□□□ -2.02
BRCA1-224ENST00000497488 LINC01546A6NGU7 62 aa2.4□□□□□ -2.03
BRCA1-224ENST00000497488 LCE3AQ5TA76 89 aa2.4□□□□□ -2.03
BRCA1-224ENST00000497488 SMIM11BQ8TCY0 68 aa2.4□□□□□ -2.03
BRCA1-224ENST00000497488 C6orf48Q9UBA6 75 aa2.4□□□□□ -2.03
BRCA1-224ENST00000497488 K7EMI3 77 aa2.39□□□□□ -2.03
BRCA1-224ENST00000497488 C18orf32Q8TCD1 76 aa2.39□□□□□ -2.03
BRCA1-224ENST00000497488 LINC00846Q9NV44 126 aa2.39□□□□□ -2.03
BRCA1-224ENST00000497488 CDKN2A-AS1Q9UH64 79 aa2.39□□□□□ -2.03
BRCA1-224ENST00000497488 A0A087WVE0 104 aa2.38□□□□□ -2.03
BRCA1-224ENST00000497488 NDUFA1O15239 70 aa2.38□□□□□ -2.03
BRCA1-224ENST00000497488 LEPROTL1O95214 131 aa2.38□□□□□ -2.03
BRCA1-224ENST00000497488 RPL37P61927 97 aaKnown RBP2.38□□□□□ -2.03
BRCA1-224ENST00000497488 Q6ZRX8 168 aa2.38□□□□□ -2.03
BRCA1-224ENST00000497488 TOMM7Q9P0U1 55 aa2.38□□□□□ -2.03
BRCA1-224ENST00000497488 FLG2Q5D862 2391 aaPredicted RBP2.37□□□□□ -2.03
BRCA1-224ENST00000497488 UBR4Q5T4S7 5183 aa2.37□□□□□ -2.03
BRCA1-224ENST00000497488 MT1HL1P0DM35 61 aa2.37□□□□□ -2.03
BRCA1-224ENST00000497488 MUSTN1Q8IVN3 82 aa2.36□□□□□ -2.03
BRCA1-224ENST00000497488 Q8IZM0 81 aa2.36□□□□□ -2.03
BRCA1-224ENST00000497488 TNXBP22105 4242 aa2.36□□□□□ -2.03
BRCA1-224ENST00000497488 MYMXA0A1B0GTQ4 84 aa2.35□□□□□ -2.03
BRCA1-224ENST00000497488 LINC01549A6NIU2 74 aa2.34□□□□□ -2.03
BRCA1-224ENST00000497488 OBSCNQ5VST9 7968 aa2.34□□□□□ -2.04
BRCA1-224ENST00000497488 KRTAP12-4P60329 112 aa2.33□□□□□ -2.04
BRCA1-224ENST00000497488 SPINK6Q6UWN8 80 aa2.33□□□□□ -2.04
BRCA1-224ENST00000497488 KRTAP4-3Q9BYR4 195 aa2.32□□□□□ -2.04
BRCA1-224ENST00000497488 DMBT1Q9UGM3 2413 aaPredicted RBP2.32□□□□□ -2.04
BRCA1-224ENST00000497488 RNF213Q63HN8 5207 aa2.31□□□□□ -2.04
BRCA1-224ENST00000497488 LRP2P98164 4655 aa2.31□□□□□ -2.04
BRCA1-224ENST00000497488 KRTAP12-3P60328 96 aa2.3□□□□□ -2.04
BRCA1-224ENST00000497488 LPAP08519 4548 aa2.29□□□□□ -2.04
BRCA1-224ENST00000497488 SMIM13P0DJ93 91 aa2.29□□□□□ -2.04
BRCA1-224ENST00000497488 LINC00158P58513 81 aa2.29□□□□□ -2.04
BRCA1-224ENST00000497488 PRLHP81277 87 aa2.29□□□□□ -2.04
BRCA1-224ENST00000497488 SPATA8Q6RVD6 105 aa2.29□□□□□ -2.04
BRCA1-224ENST00000497488 C3orf79P0CE67 100 aa2.28□□□□□ -2.04
BRCA1-224ENST00000497488 PLNP26678 52 aa2.28□□□□□ -2.04
BRCA1-224ENST00000497488 Q6JHZ5 121 aa2.28□□□□□ -2.04
BRCA1-224ENST00000497488 H0Y9P7 68 aa2.26□□□□□ -2.05
BRCA1-224ENST00000497488 SPINK7P58062 85 aa2.26□□□□□ -2.05
BRCA1-224ENST00000497488 SPRR1AP35321 89 aa2.25□□□□□ -2.05
BRCA1-224ENST00000497488 KRTAP5-5Q701N2 237 aaPredicted RBP2.25□□□□□ -2.05
BRCA1-224ENST00000497488 LINC00308Q8TCZ7 52 aa2.23□□□□□ -2.05
BRCA1-224ENST00000497488 KCNQ1DNQ9H478 68 aa2.23□□□□□ -2.05
BRCA1-224ENST00000497488 ETDCA0A1B0GVM5 59 aa2.22□□□□□ -2.05
BRCA1-224ENST00000497488 MUC2Q02817 5179 aa2.21□□□□□ -2.06
BRCA1-224ENST00000497488 MUC17Q685J3 4493 aa2.18□□□□□ -2.06
BRCA1-224ENST00000497488 FAT4Q6V0I7 4981 aa2.17□□□□□ -2.06
BRCA1-224ENST00000497488 TRBV7-4A0A0J9YYF1 115 aa2.17□□□□□ -2.06
BRCA1-224ENST00000497488 COX7BP24311 80 aa2.17□□□□□ -2.06
BRCA1-224ENST00000497488 COX8AP10176 69 aa2.16□□□□□ -2.06
BRCA1-224ENST00000497488 SPRR1BP22528 89 aa2.16□□□□□ -2.06
BRCA1-224ENST00000497488 DEFB105AQ8NG35 78 aa2.16□□□□□ -2.06
BRCA1-224ENST00000497488 IGLV5-48A0A075B6I7 105 aa2.15□□□□□ -2.07
BRCA1-224ENST00000497488 SPINK1P00995 79 aa2.15□□□□□ -2.07
BRCA1-224ENST00000497488 ATP5EP2Q5VTU8 51 aa2.15□□□□□ -2.07
BRCA1-224ENST00000497488 SSBP3-AS1Q7Z2R9 100 aa2.15□□□□□ -2.07
BRCA1-224ENST00000497488 A0A1B0GU69 56 aa2.13□□□□□ -2.07
BRCA1-224ENST00000497488 RPS29P62273 56 aaKnown RBP2.13□□□□□ -2.07
BRCA1-224ENST00000497488 KRTAP4-1Q9BYQ7 146 aa2.12□□□□□ -2.07
BRCA1-224ENST00000497488 KRTAP5-2Q701N4 177 aa2.11□□□□□ -2.07
BRCA1-224ENST00000497488 C9orf92A6NGG3 77 aa2.1□□□□□ -2.07
BRCA1-224ENST00000497488 H0YGX0 51 aa2.07□□□□□ -2.08
BRCA1-224ENST00000497488 LCE1CQ5T751 118 aa2.07□□□□□ -2.08
BRCA1-224ENST00000497488 LCE1BQ5T7P3 118 aa2.07□□□□□ -2.08
BRCA1-224ENST00000497488 KRTAP19-2Q3LHN2 52 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms