RNA–Protein interactions for RNA: ENST00000493795.5

BRCA1-221, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 5,732 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-221ENST00000493795 MXRA5Q9NR99 2828 aa3.12□□□□□ -1.91
BRCA1-221ENST00000493795 PRKDCP78527 4128 aaKnown RBP3.1□□□□□ -1.91
BRCA1-221ENST00000493795 DYNC2H1Q8NCM8 4307 aaKnown RBP3.07□□□□□ -1.92
BRCA1-221ENST00000493795 KRTAP4-5Q9BYR2 181 aa3.06□□□□□ -1.92
BRCA1-221ENST00000493795 PKD1L1Q8TDX9 2849 aa3.05□□□□□ -1.92
BRCA1-221ENST00000493795 KRTAP10-4P60372 401 aaPredicted RBP3.05□□□□□ -1.92
BRCA1-221ENST00000493795 FRAS1Q86XX4 4008 aa3.05□□□□□ -1.92
BRCA1-221ENST00000493795 OTOGQ6ZRI0 2925 aa3.04□□□□□ -1.92
BRCA1-221ENST00000493795 COL7A1Q02388 2944 aa3.04□□□□□ -1.92
BRCA1-221ENST00000493795 LCE3CQ5T5A8 94 aa3.02□□□□□ -1.93
BRCA1-221ENST00000493795 SPRR2FQ96RM1 72 aa3.02□□□□□ -1.93
BRCA1-221ENST00000493795 DNHD1Q96M86 4753 aa3.01□□□□□ -1.93
BRCA1-221ENST00000493795 DNAH9Q9NYC9 4486 aa3.01□□□□□ -1.93
BRCA1-221ENST00000493795 KRTAP19-5Q3LI72 72 aa3□□□□□ -1.93
BRCA1-221ENST00000493795 VWFP04275 2813 aa3□□□□□ -1.93
BRCA1-221ENST00000493795 KRTAP19-4Q3LI73 84 aa2.99□□□□□ -1.93
BRCA1-221ENST00000493795 FBN3Q75N90 2809 aa2.99□□□□□ -1.93
BRCA1-221ENST00000493795 HUWE1Q7Z6Z7 4374 aaKnown RBP2.97□□□□□ -1.93
BRCA1-221ENST00000493795 SRRM2Q9UQ35 2752 aaKnown RBP2.97□□□□□ -1.93
BRCA1-221ENST00000493795 DNAH6Q9C0G6 4158 aa2.95□□□□□ -1.94
BRCA1-221ENST00000493795 MT1HP80294 61 aa2.94□□□□□ -1.94
BRCA1-221ENST00000493795 SPRR2GQ9BYE4 73 aa2.94□□□□□ -1.94
BRCA1-221ENST00000493795 FAT2Q9NYQ8 4349 aa2.93□□□□□ -1.94
BRCA1-221ENST00000493795 MT2AP02795 61 aa2.92□□□□□ -1.94
BRCA1-221ENST00000493795 PKD1P98161 4303 aa2.91□□□□□ -1.94
BRCA1-221ENST00000493795 HECTD4Q9Y4D8 3996 aa2.91□□□□□ -1.94
BRCA1-221ENST00000493795 FBN1P35555 2871 aaKnown RBP2.91□□□□□ -1.94
BRCA1-221ENST00000493795 ALMS1Q8TCU4 4167 aa2.91□□□□□ -1.94
BRCA1-221ENST00000493795 DNAH2Q9P225 4427 aa2.9□□□□□ -1.94
BRCA1-221ENST00000493795 MEGF8Q7Z7M0 2845 aa2.88□□□□□ -1.95
BRCA1-221ENST00000493795 LCE3BQ5TA77 95 aa2.88□□□□□ -1.95
BRCA1-221ENST00000493795 HYDINQ4G0P3 5121 aa2.88□□□□□ -1.95
BRCA1-221ENST00000493795 DNAH10Q8IVF4 4471 aa2.87□□□□□ -1.95
BRCA1-221ENST00000493795 KMT2AQ03164 3969 aa2.86□□□□□ -1.95
BRCA1-221ENST00000493795 SPRR2EP22531 72 aa2.86□□□□□ -1.95
BRCA1-221ENST00000493795 SPRR2BP35325 72 aa2.86□□□□□ -1.95
BRCA1-221ENST00000493795 SPRR2AP35326 72 aa2.86□□□□□ -1.95
BRCA1-221ENST00000493795 KRTAP12-4P60329 112 aa2.85□□□□□ -1.95
BRCA1-221ENST00000493795 VPS13BQ7Z7G8 4022 aa2.84□□□□□ -1.95
BRCA1-221ENST00000493795 VPS13DQ5THJ4 4388 aa2.84□□□□□ -1.95
BRCA1-221ENST00000493795 STARD9Q9P2P6 4700 aa2.84□□□□□ -1.95
BRCA1-221ENST00000493795 KRTAP4-1Q9BYQ7 146 aa2.84□□□□□ -1.95
BRCA1-221ENST00000493795 MT1FP04733 61 aa2.82□□□□□ -1.96
BRCA1-221ENST00000493795 DNAH11Q96DT5 4516 aa2.81□□□□□ -1.96
BRCA1-221ENST00000493795 PKHD1P08F94 4074 aa2.8□□□□□ -1.96
BRCA1-221ENST00000493795 PLECQ15149 4684 aaKnown RBP2.78□□□□□ -1.96
BRCA1-221ENST00000493795 SPRR2DP22532 72 aa2.77□□□□□ -1.97
BRCA1-221ENST00000493795 KMT2CQ8NEZ4 4911 aaKnown RBP2.77□□□□□ -1.97
BRCA1-221ENST00000493795 FAT3Q8TDW7 4589 aa2.77□□□□□ -1.97
BRCA1-221ENST00000493795 DNAH8Q96JB1 4490 aa2.76□□□□□ -1.97
BRCA1-221ENST00000493795 LCE3DQ9BYE3 92 aa2.76□□□□□ -1.97
BRCA1-221ENST00000493795 MT1GP13640 62 aa2.75□□□□□ -1.97
BRCA1-221ENST00000493795 DNAH17Q9UFH2 4485 aa2.75□□□□□ -1.97
BRCA1-221ENST00000493795 RYR3Q15413 4870 aa2.75□□□□□ -1.97
BRCA1-221ENST00000493795 SACSQ9NZJ4 4579 aa2.74□□□□□ -1.97
BRCA1-221ENST00000493795 LCE2BO14633 110 aa2.74□□□□□ -1.97
BRCA1-221ENST00000493795 PKHD1L1Q86WI1 4243 aa2.74□□□□□ -1.97
BRCA1-221ENST00000493795 LCE3EQ5T5B0 92 aa2.72□□□□□ -1.97
BRCA1-221ENST00000493795 DNAH5Q8TE73 4624 aa2.71□□□□□ -1.98
BRCA1-221ENST00000493795 KRTAP19-8Q3LI54 63 aa2.66□□□□□ -1.98
BRCA1-221ENST00000493795 RYR2Q92736 4967 aa2.64□□□□□ -1.99
BRCA1-221ENST00000493795 MT1XP80297 61 aa2.61□□□□□ -1.99
BRCA1-221ENST00000493795 MYCBP2O75592 4640 aa2.61□□□□□ -1.99
BRCA1-221ENST00000493795 LCE2CQ5TA81 110 aa2.59□□□□□ -1.99
BRCA1-221ENST00000493795 SPRR5A0A1B0GTR4 108 aa2.59□□□□□ -2
BRCA1-221ENST00000493795 KRTAP19-1Q8IUB9 90 aa2.57□□□□□ -2
BRCA1-221ENST00000493795 FAT1Q14517 4588 aa2.57□□□□□ -2
BRCA1-221ENST00000493795 TNXBP22105 4242 aa2.56□□□□□ -2
BRCA1-221ENST00000493795 LCE2DQ5TA82 110 aaPredicted RBP2.55□□□□□ -2
BRCA1-221ENST00000493795 EPPK1P58107 5090 aaKnown RBP2.55□□□□□ -2
BRCA1-221ENST00000493795 HSPG2P98160 4391 aa2.55□□□□□ -2
BRCA1-221ENST00000493795 LRP1Q07954 4544 aaKnown RBP2.54□□□□□ -2
BRCA1-221ENST00000493795 PRM1P04553 51 aa2.54□□□□□ -2
BRCA1-221ENST00000493795 APOBP04114 4563 aaKnown RBP2.53□□□□□ -2
BRCA1-221ENST00000493795 LRP1BQ9NZR2 4599 aa2.52□□□□□ -2.01
BRCA1-221ENST00000493795 MT1BP07438 61 aa2.51□□□□□ -2.01
BRCA1-221ENST00000493795 KRTAP4-8A0A0G2JLE6 195 aa2.51□□□□□ -2.01
BRCA1-221ENST00000493795 KRTAP4-8Q9BYQ9 185 aa2.51□□□□□ -2.01
BRCA1-221ENST00000493795 MT3P25713 68 aa2.51□□□□□ -2.01
BRCA1-221ENST00000493795 KRTAP19-3Q7Z4W3 81 aa2.5□□□□□ -2.01
BRCA1-221ENST00000493795 HERC1Q15751 4861 aa2.48□□□□□ -2.01
BRCA1-221ENST00000493795 MT1LQ93083 61 aa2.48□□□□□ -2.01
BRCA1-221ENST00000493795 ABCA13Q86UQ4 5058 aa2.48□□□□□ -2.01
BRCA1-221ENST00000493795 LCE1BQ5T7P3 118 aa2.46□□□□□ -2.02
BRCA1-221ENST00000493795 DYNC1H1Q14204 4646 aaKnown RBP2.45□□□□□ -2.02
BRCA1-221ENST00000493795 PCLOQ9Y6V0 5065 aa2.45□□□□□ -2.02
BRCA1-221ENST00000493795 LPAP08519 4548 aa2.43□□□□□ -2.02
BRCA1-221ENST00000493795 MT4P47944 62 aa2.43□□□□□ -2.02
BRCA1-221ENST00000493795 LCE1DQ5T752 114 aa2.42□□□□□ -2.02
BRCA1-221ENST00000493795 KRTAP9-8Q9BYQ0 159 aa2.41□□□□□ -2.02
BRCA1-221ENST00000493795 RYR1P21817 5038 aa2.41□□□□□ -2.02
BRCA1-221ENST00000493795 KRTAP4-7Q9BYR0 210 aa2.4□□□□□ -2.02
BRCA1-221ENST00000493795 MT1EP04732 61 aa2.39□□□□□ -2.03
BRCA1-221ENST00000493795 KRTAP9-3Q9BYQ3 159 aa2.39□□□□□ -2.03
BRCA1-221ENST00000493795 MT1MQ8N339 61 aa2.35□□□□□ -2.03
BRCA1-221ENST00000493795 LCE5AQ5TCM9 118 aa2.32□□□□□ -2.04
BRCA1-221ENST00000493795 FLGP20930 4061 aaPredicted RBP2.31□□□□□ -2.04
BRCA1-221ENST00000493795 BIRC6Q9NR09 4857 aa2.31□□□□□ -2.04
BRCA1-221ENST00000493795 LOC100996750A0A140TA64 210 aa2.29□□□□□ -2.04
BRCA1-221ENST00000493795 HERC2O95714 4834 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms