RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 FAT3Q8TDW7 4589 aa0.26□□□□□ -2.37
PTCD3-214ENST00000483925 MGAM2Q2M2H8 2515 aa0.26□□□□□ -2.37
PTCD3-214ENST00000483925 EPG5Q9HCE0 2579 aa0.26□□□□□ -2.37
PTCD3-214ENST00000483925 COL7A1Q02388 2944 aa0.26□□□□□ -2.37
PTCD3-214ENST00000483925 SYNE2Q8WXH0 6885 aaKnown RBP0.26□□□□□ -2.37
PTCD3-214ENST00000483925 SPTAN1Q13813 2472 aaKnown RBP0.25□□□□□ -2.37
PTCD3-214ENST00000483925 RIF1Q5UIP0 2472 aaKnown RBP0.25□□□□□ -2.37
PTCD3-214ENST00000483925 SETD2Q9BYW2 2564 aaPredicted RBP0.25□□□□□ -2.37
PTCD3-214ENST00000483925 LRRK2Q5S007 2527 aa0.25□□□□□ -2.37
PTCD3-214ENST00000483925 DOPEY1Q5JWR5 2465 aa0.25□□□□□ -2.37
PTCD3-214ENST00000483925 DNAH11Q96DT5 4516 aa0.25□□□□□ -2.37
PTCD3-214ENST00000483925 WDR87Q6ZQQ6 2873 aa0.24□□□□□ -2.37
PTCD3-214ENST00000483925 MDN1Q9NU22 5596 aa0.24□□□□□ -2.37
PTCD3-214ENST00000483925 APOBP04114 4563 aaKnown RBP0.24□□□□□ -2.37
PTCD3-214ENST00000483925 UTP20O75691 2785 aaKnown RBP0.24□□□□□ -2.37
PTCD3-214ENST00000483925 TEP1Q99973 2627 aaKnown RBP0.24□□□□□ -2.37
PTCD3-214ENST00000483925 MYO18BQ8IUG5 2567 aa0.24□□□□□ -2.37
PTCD3-214ENST00000483925 TLN2Q9Y4G6 2542 aa0.24□□□□□ -2.37
PTCD3-214ENST00000483925 CENPEQ02224 2701 aa0.23□□□□□ -2.37
PTCD3-214ENST00000483925 NBEAL1Q6ZS30 2694 aa0.23□□□□□ -2.37
PTCD3-214ENST00000483925 COL6A5A8TX70 2615 aa0.23□□□□□ -2.37
PTCD3-214ENST00000483925 STAB2Q8WWQ8 2551 aa0.23□□□□□ -2.37
PTCD3-214ENST00000483925 ACACBO00763 2458 aa0.23□□□□□ -2.37
PTCD3-214ENST00000483925 TLN1Q9Y490 2541 aaKnown RBP0.23□□□□□ -2.37
PTCD3-214ENST00000483925 ANKRD11Q6UB99 2663 aaPredicted RBP0.22□□□□□ -2.37
PTCD3-214ENST00000483925 CEP295Q9C0D2 2601 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 USP9YO00507 2555 aaPredicted RBP0.22□□□□□ -2.37
PTCD3-214ENST00000483925 USP9XQ93008 2570 aaPredicted RBP0.22□□□□□ -2.37
PTCD3-214ENST00000483925 MYO9AB2RTY4 2548 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 DNAH2Q9P225 4427 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 PDZD2O15018 2839 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 NIPBLQ6KC79 2804 aaeCLIP0.22□□□□□ -2.37
PTCD3-214ENST00000483925 AKAP9Q99996 3911 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 TGP01266 2768 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 NBEAL2Q6ZNJ1 2754 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 SRRM2Q9UQ35 2752 aaKnown RBP0.22□□□□□ -2.37
PTCD3-214ENST00000483925 KRTAP8-1Q8IUC2 63 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 HIVEP1P15822 2718 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 ZZEF1O43149 2961 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 SVEP1Q4LDE5 3571 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 FASNP49327 2511 aaKnown RBP0.22□□□□□ -2.37
PTCD3-214ENST00000483925 CFAP46Q8IYW2 2715 aa0.22□□□□□ -2.37
PTCD3-214ENST00000483925 A0A0C4DFX4 3053 aa0.21□□□□□ -2.38
PTCD3-214ENST00000483925 SMR3BP02814 79 aaPredicted RBP0.21□□□□□ -2.38
PTCD3-214ENST00000483925 KMT2DO14686 5537 aa0.21□□□□□ -2.38
PTCD3-214ENST00000483925 DNAH6Q9C0G6 4158 aa0.2□□□□□ -2.38
PTCD3-214ENST00000483925 MAP1AP78559 2803 aaPredicted RBP0.2□□□□□ -2.38
PTCD3-214ENST00000483925 DMXL1Q9Y485 3027 aa0.2□□□□□ -2.38
PTCD3-214ENST00000483925 CRYBG3Q68DQ2 2970 aa0.2□□□□□ -2.38
PTCD3-214ENST00000483925 FSIP2Q5CZC0 6907 aa0.2□□□□□ -2.38
PTCD3-214ENST00000483925 SPRR2FQ96RM1 72 aa0.2□□□□□ -2.38
PTCD3-214ENST00000483925 SPRR2GQ9BYE4 73 aa0.2□□□□□ -2.38
PTCD3-214ENST00000483925 ITPR1Q14643 2758 aa0.2□□□□□ -2.38
PTCD3-214ENST00000483925 TEX15Q9BXT5 2789 aa0.2□□□□□ -2.38
PTCD3-214ENST00000483925 HERC1Q15751 4861 aa0.2□□□□□ -2.38
PTCD3-214ENST00000483925 ITPR3Q14573 2671 aa0.19□□□□□ -2.38
PTCD3-214ENST00000483925 MACF1Q9UPN3 7388 aaKnown RBP0.19□□□□□ -2.38
PTCD3-214ENST00000483925 TENM2Q9NT68 2774 aa0.19□□□□□ -2.38
PTCD3-214ENST00000483925 MXRA5Q9NR99 2828 aa0.19□□□□□ -2.38
PTCD3-214ENST00000483925 VPS13DQ5THJ4 4388 aa0.18□□□□□ -2.38
PTCD3-214ENST00000483925 DYNC2H1Q8NCM8 4307 aaKnown RBP0.17□□□□□ -2.38
PTCD3-214ENST00000483925 TACC2O95359 2948 aa0.17□□□□□ -2.38
PTCD3-214ENST00000483925 MT1HL1P0DM35 61 aa0.17□□□□□ -2.38
PTCD3-214ENST00000483925 KRTAP19-5Q3LI72 72 aa0.17□□□□□ -2.38
PTCD3-214ENST00000483925 ITPR2Q14571 2701 aa0.17□□□□□ -2.38
PTCD3-214ENST00000483925 DNHD1Q96M86 4753 aa0.17□□□□□ -2.38
PTCD3-214ENST00000483925 SPENQ96T58 3664 aaKnown RBP0.16□□□□□ -2.38
PTCD3-214ENST00000483925 ZANQ9Y493 2812 aa0.16□□□□□ -2.38
PTCD3-214ENST00000483925 MT1HP80294 61 aa0.16□□□□□ -2.38
PTCD3-214ENST00000483925 KRTAP19-8Q3LI54 63 aa0.16□□□□□ -2.38
PTCD3-214ENST00000483925 MGAQ8IWI9 3026 aa0.16□□□□□ -2.38
PTCD3-214ENST00000483925 PCLOQ9Y6V0 5065 aa0.16□□□□□ -2.38
PTCD3-214ENST00000483925 SRCAPQ6ZRS2 3230 aa0.15□□□□□ -2.38
PTCD3-214ENST00000483925 LAMA1P25391 3075 aa0.15□□□□□ -2.38
PTCD3-214ENST00000483925 BIRC6Q9NR09 4857 aa0.15□□□□□ -2.39
PTCD3-214ENST00000483925 KALRNO60229 2985 aa0.15□□□□□ -2.39
PTCD3-214ENST00000483925 MT1EP04732 61 aa0.15□□□□□ -2.39
PTCD3-214ENST00000483925 MT1GP13640 62 aa0.15□□□□□ -2.39
PTCD3-214ENST00000483925 KRTAP19-7Q3SYF9 63 aa0.15□□□□□ -2.39
PTCD3-214ENST00000483925 MT1LQ93083 61 aa0.15□□□□□ -2.39
PTCD3-214ENST00000483925 NBEAQ8NFP9 2946 aa0.15□□□□□ -2.39
PTCD3-214ENST00000483925 FRYLO94915 3013 aa0.15□□□□□ -2.39
PTCD3-214ENST00000483925 LRBAP50851 2863 aa0.15□□□□□ -2.39
PTCD3-214ENST00000483925 RANBP2P49792 3224 aaKnown RBP0.15□□□□□ -2.39
PTCD3-214ENST00000483925 COL12A1Q99715 3063 aa0.15□□□□□ -2.39
PTCD3-214ENST00000483925 TRIOO75962 3097 aa0.14□□□□□ -2.39
PTCD3-214ENST00000483925 MT2AP02795 61 aa0.14□□□□□ -2.39
PTCD3-214ENST00000483925 DNAH12Q6ZR08 3092 aa0.14□□□□□ -2.39
PTCD3-214ENST00000483925 DNAH1Q9P2D7 4330 aa0.14□□□□□ -2.39
PTCD3-214ENST00000483925 CMYA5Q8N3K9 4069 aa0.13□□□□□ -2.39
PTCD3-214ENST00000483925 LAMA3Q16787 3333 aa0.13□□□□□ -2.39
PTCD3-214ENST00000483925 MUC12Q9UKN1 5478 aa0.13□□□□□ -2.39
PTCD3-214ENST00000483925 MT1XP80297 61 aa0.13□□□□□ -2.39
PTCD3-214ENST00000483925 KRTAP6-1Q3LI64 71 aa0.13□□□□□ -2.39
PTCD3-214ENST00000483925 CHD7Q9P2D1 2997 aa0.13□□□□□ -2.39
PTCD3-214ENST00000483925 ATMQ13315 3056 aa0.13□□□□□ -2.39
PTCD3-214ENST00000483925 STARD9Q9P2P6 4700 aa0.13□□□□□ -2.39
PTCD3-214ENST00000483925 HTTP42858 3142 aa0.13□□□□□ -2.39
PTCD3-214ENST00000483925 C5orf42Q9H799 3197 aa0.12□□□□□ -2.39
PTCD3-214ENST00000483925 KMT2CQ8NEZ4 4911 aaKnown RBP0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 188.6 ms