RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SPINT4Q6UDR6 99 aa2.76□□□□□ -1.97
USP40-213ENST00000483216 NOTCH1P46531 2555 aa2.76□□□□□ -1.97
USP40-213ENST00000483216 HUWE1Q7Z6Z7 4374 aaKnown RBP2.75□□□□□ -1.97
USP40-213ENST00000483216 TGP01266 2768 aa2.74□□□□□ -1.97
USP40-213ENST00000483216 ROMO1P60602 79 aa2.74□□□□□ -1.97
USP40-213ENST00000483216 C1orf134Q5TEV5 83 aa2.74□□□□□ -1.97
USP40-213ENST00000483216 CSAG1Q6PB30 78 aa2.74□□□□□ -1.97
USP40-213ENST00000483216 K7EIL1 84 aa2.73□□□□□ -1.97
USP40-213ENST00000483216 KRTAP25-1Q3LHN0 102 aa2.73□□□□□ -1.97
USP40-213ENST00000483216 COX6B2Q6YFQ2 88 aa2.73□□□□□ -1.97
USP40-213ENST00000483216 Q96NJ1 140 aa2.73□□□□□ -1.97
USP40-213ENST00000483216 DNAH1Q9P2D7 4330 aa2.72□□□□□ -1.97
USP40-213ENST00000483216 A0A096LNI7 61 aa2.72□□□□□ -1.97
USP40-213ENST00000483216 DNAH9Q9NYC9 4486 aa2.71□□□□□ -1.98
USP40-213ENST00000483216 DYNC2H1Q8NCM8 4307 aaKnown RBP2.71□□□□□ -1.98
USP40-213ENST00000483216 UBE2DNLQ8IWF7 75 aa2.71□□□□□ -1.98
USP40-213ENST00000483216 TENM3Q9P273 2699 aa2.71□□□□□ -1.98
USP40-213ENST00000483216 A0A1W2PNN7 141 aa2.7□□□□□ -1.98
USP40-213ENST00000483216 COL7A1Q02388 2944 aa2.69□□□□□ -1.98
USP40-213ENST00000483216 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
USP40-213ENST00000483216 P0C880 135 aa2.68□□□□□ -1.98
USP40-213ENST00000483216 A0A1B0GU33 70 aa2.67□□□□□ -1.98
USP40-213ENST00000483216 VPS13DQ5THJ4 4388 aa2.66□□□□□ -1.98
USP40-213ENST00000483216 NUPR2A6NF83 97 aa2.66□□□□□ -1.98
USP40-213ENST00000483216 SPACA4Q8TDM5 124 aa2.66□□□□□ -1.98
USP40-213ENST00000483216 PLECQ15149 4684 aaKnown RBP2.66□□□□□ -1.98
USP40-213ENST00000483216 DNAH10Q8IVF4 4471 aa2.65□□□□□ -1.98
USP40-213ENST00000483216 PRKDCP78527 4128 aaKnown RBP2.65□□□□□ -1.98
USP40-213ENST00000483216 A0A0G2JQZ4 141 aa2.65□□□□□ -1.99
USP40-213ENST00000483216 SPINK6Q6UWN8 80 aa2.65□□□□□ -1.99
USP40-213ENST00000483216 KRTAP12-3P60328 96 aa2.64□□□□□ -1.99
USP40-213ENST00000483216 ADM2Q7Z4H4 148 aa2.64□□□□□ -1.99
USP40-213ENST00000483216 KRTAP12-4P60329 112 aa2.63□□□□□ -1.99
USP40-213ENST00000483216 RPS29P62273 56 aaKnown RBP2.63□□□□□ -1.99
USP40-213ENST00000483216 CRIPTQ9P021 101 aa2.63□□□□□ -1.99
USP40-213ENST00000483216 APLNQ9ULZ1 77 aa2.63□□□□□ -1.99
USP40-213ENST00000483216 DNAH17Q9UFH2 4485 aa2.62□□□□□ -1.99
USP40-213ENST00000483216 NBDYA0A0U1RRE5 68 aa2.62□□□□□ -1.99
USP40-213ENST00000483216 SPINK1P00995 79 aa2.62□□□□□ -1.99
USP40-213ENST00000483216 H1FX-AS1Q4G0G2 97 aa2.62□□□□□ -1.99
USP40-213ENST00000483216 DNAH7Q8WXX0 4024 aa2.62□□□□□ -1.99
USP40-213ENST00000483216 KRTAP6-3Q3LI67 103 aa2.61□□□□□ -1.99
USP40-213ENST00000483216 DNAH6Q9C0G6 4158 aa2.61□□□□□ -1.99
USP40-213ENST00000483216 STAB2Q8WWQ8 2551 aa2.6□□□□□ -1.99
USP40-213ENST00000483216 RPL37P61927 97 aaKnown RBP2.6□□□□□ -1.99
USP40-213ENST00000483216 PSORS1C2Q9UIG4 136 aa2.6□□□□□ -1.99
USP40-213ENST00000483216 DNAH2Q9P225 4427 aa2.6□□□□□ -1.99
USP40-213ENST00000483216 STARD9Q9P2P6 4700 aa2.6□□□□□ -1.99
USP40-213ENST00000483216 TENM2Q9NT68 2774 aa2.58□□□□□ -2
USP40-213ENST00000483216 Q6ZSA8 131 aa2.58□□□□□ -2
USP40-213ENST00000483216 Q6ZRN7 208 aaPredicted RBP2.57□□□□□ -2
USP40-213ENST00000483216 C20orf166-AS1Q96NR2 134 aa2.56□□□□□ -2
USP40-213ENST00000483216 LYSTQ99698 3801 aa2.56□□□□□ -2
USP40-213ENST00000483216 HECTD4Q9Y4D8 3996 aa2.56□□□□□ -2
USP40-213ENST00000483216 CSMD3Q7Z407 3707 aa2.56□□□□□ -2
USP40-213ENST00000483216 KMT2CQ8NEZ4 4911 aaKnown RBP2.56□□□□□ -2
USP40-213ENST00000483216 ALMS1Q8TCU4 4167 aa2.55□□□□□ -2
USP40-213ENST00000483216 A0A087WTM6 91 aa2.55□□□□□ -2
USP40-213ENST00000483216 H0YAA0 97 aa2.55□□□□□ -2
USP40-213ENST00000483216 LUZP6Q538Z0 58 aa2.55□□□□□ -2
USP40-213ENST00000483216 DNAH8Q96JB1 4490 aa2.54□□□□□ -2
USP40-213ENST00000483216 DNAH11Q96DT5 4516 aa2.54□□□□□ -2
USP40-213ENST00000483216 DNAH5Q8TE73 4624 aa2.51□□□□□ -2.01
USP40-213ENST00000483216 RYR3Q15413 4870 aa2.51□□□□□ -2.01
USP40-213ENST00000483216 FRAS1Q86XX4 4008 aa2.5□□□□□ -2.01
USP40-213ENST00000483216 KMT2AQ03164 3969 aa2.5□□□□□ -2.01
USP40-213ENST00000483216 RYR2Q92736 4967 aa2.47□□□□□ -2.01
USP40-213ENST00000483216 M0QZ58 72 aa2.47□□□□□ -2.01
USP40-213ENST00000483216 SRRM2Q9UQ35 2752 aaKnown RBP2.47□□□□□ -2.01
USP40-213ENST00000483216 SACSQ9NZJ4 4579 aa2.46□□□□□ -2.02
USP40-213ENST00000483216 HYDINQ4G0P3 5121 aa2.46□□□□□ -2.02
USP40-213ENST00000483216 FAT2Q9NYQ8 4349 aa2.45□□□□□ -2.02
USP40-213ENST00000483216 PKD1P98161 4303 aa2.44□□□□□ -2.02
USP40-213ENST00000483216 LRP1BQ9NZR2 4599 aa2.43□□□□□ -2.02
USP40-213ENST00000483216 R4GN34 69 aa2.43□□□□□ -2.02
USP40-213ENST00000483216 DYNC1H1Q14204 4646 aaKnown RBP2.43□□□□□ -2.02
USP40-213ENST00000483216 KRTAP21-2Q3LI59 83 aa2.42□□□□□ -2.02
USP40-213ENST00000483216 EPPK1P58107 5090 aaKnown RBP2.41□□□□□ -2.02
USP40-213ENST00000483216 S4R3F8 94 aa2.41□□□□□ -2.02
USP40-213ENST00000483216 BIRC6Q9NR09 4857 aa2.41□□□□□ -2.02
USP40-213ENST00000483216 PLAC4Q8WY50 150 aa2.4□□□□□ -2.03
USP40-213ENST00000483216 VPS13BQ7Z7G8 4022 aa2.39□□□□□ -2.03
USP40-213ENST00000483216 APOBP04114 4563 aaKnown RBP2.38□□□□□ -2.03
USP40-213ENST00000483216 PKHD1L1Q86WI1 4243 aa2.37□□□□□ -2.03
USP40-213ENST00000483216 TPRXLQ17RH7 258 aa2.37□□□□□ -2.03
USP40-213ENST00000483216 A0A0D9SG42 100 aa2.36□□□□□ -2.03
USP40-213ENST00000483216 PKHD1P08F94 4074 aa2.35□□□□□ -2.03
USP40-213ENST00000483216 FAT1Q14517 4588 aa2.34□□□□□ -2.04
USP40-213ENST00000483216 KIAA1109Q2LD37 5005 aa2.33□□□□□ -2.04
USP40-213ENST00000483216 HERC2O95714 4834 aa2.33□□□□□ -2.04
USP40-213ENST00000483216 C9orf92A6NGG3 77 aa2.31□□□□□ -2.04
USP40-213ENST00000483216 RYR1P21817 5038 aa2.31□□□□□ -2.04
USP40-213ENST00000483216 SMR3BP02814 79 aaPredicted RBP2.3□□□□□ -2.04
USP40-213ENST00000483216 Q5VSD8 79 aa2.3□□□□□ -2.04
USP40-213ENST00000483216 PCLOQ9Y6V0 5065 aa2.3□□□□□ -2.04
USP40-213ENST00000483216 KRTAP12-1P59990 96 aa2.29□□□□□ -2.04
USP40-213ENST00000483216 KRTAP10-4P60372 401 aaPredicted RBP2.29□□□□□ -2.04
USP40-213ENST00000483216 FAT3Q8TDW7 4589 aa2.29□□□□□ -2.04
USP40-213ENST00000483216 C10orf95Q9H7T3 257 aa2.28□□□□□ -2.04
USP40-213ENST00000483216 HSPG2P98160 4391 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms