RNA–Protein interactions for RNA: ENST00000478420.1

SMARCA1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 3

Gene SMARCA1, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-204ENST00000478420 ATMQ13315 3056 aa0.73□□□□□ -2.29
SMARCA1-204ENST00000478420 LAMA5O15230 3695 aa0.73□□□□□ -2.29
SMARCA1-204ENST00000478420 SVEP1Q4LDE5 3571 aa0.73□□□□□ -2.29
SMARCA1-204ENST00000478420 SPINK6Q6UWN8 80 aa0.73□□□□□ -2.29
SMARCA1-204ENST00000478420 CLTCL1P53675 1640 aa0.73□□□□□ -2.29
SMARCA1-204ENST00000478420 LAMA1P25391 3075 aa0.73□□□□□ -2.29
SMARCA1-204ENST00000478420 IAPPP10997 89 aa0.72□□□□□ -2.29
SMARCA1-204ENST00000478420 SMR3AQ99954 134 aa0.72□□□□□ -2.29
SMARCA1-204ENST00000478420 TMEM167BQ9NRX6 74 aa0.72□□□□□ -2.29
SMARCA1-204ENST00000478420 CDC42BPAQ5VT25 1732 aa0.72□□□□□ -2.29
SMARCA1-204ENST00000478420 FAT4Q6V0I7 4981 aa0.71□□□□□ -2.3
SMARCA1-204ENST00000478420 DEFB130BP0DP73 79 aa0.71□□□□□ -2.3
SMARCA1-204ENST00000478420 DEFB130AP0DP74 79 aa0.71□□□□□ -2.3
SMARCA1-204ENST00000478420 STAB2Q8WWQ8 2551 aa0.71□□□□□ -2.3
SMARCA1-204ENST00000478420 FAM208AQ9UK61 1670 aaKnown RBP0.71□□□□□ -2.3
SMARCA1-204ENST00000478420 MGAQ8IWI9 3026 aa0.7□□□□□ -2.3
SMARCA1-204ENST00000478420 MINOS1Q5TGZ0 78 aa0.7□□□□□ -2.3
SMARCA1-204ENST00000478420 LINC00308Q8TCZ7 52 aa0.7□□□□□ -2.3
SMARCA1-204ENST00000478420 APC2O95996 2303 aa0.7□□□□□ -2.3
SMARCA1-204ENST00000478420 CUBNO60494 3623 aa0.7□□□□□ -2.3
SMARCA1-204ENST00000478420 KRTAP20-1Q3LI63 56 aa0.69□□□□□ -2.3
SMARCA1-204ENST00000478420 C6orf48Q9UBA6 75 aa0.69□□□□□ -2.3
SMARCA1-204ENST00000478420 TIMM8BQ9Y5J9 83 aaPredicted RBP0.69□□□□□ -2.3
SMARCA1-204ENST00000478420 VPS13CQ709C8 3753 aa0.69□□□□□ -2.3
SMARCA1-204ENST00000478420 SSPOA2VEC9 5147 aa0.68□□□□□ -2.3
SMARCA1-204ENST00000478420 TACC2O95359 2948 aa0.68□□□□□ -2.3
SMARCA1-204ENST00000478420 ACACAQ13085 2346 aa0.67□□□□□ -2.3
SMARCA1-204ENST00000478420 LMO7Q8WWI1 1683 aa0.67□□□□□ -2.3
SMARCA1-204ENST00000478420 AKAP9Q99996 3911 aa0.67□□□□□ -2.3
SMARCA1-204ENST00000478420 COL7A1Q02388 2944 aa0.67□□□□□ -2.3
SMARCA1-204ENST00000478420 RPS27P42677 84 aaKnown RBP0.66□□□□□ -2.3
SMARCA1-204ENST00000478420 RPS27LQ71UM5 84 aaKnown RBP0.66□□□□□ -2.3
SMARCA1-204ENST00000478420 TRPM2O94759 1503 aa0.65□□□□□ -2.31
SMARCA1-204ENST00000478420 SMIM2Q9BVW6 85 aa0.65□□□□□ -2.31
SMARCA1-204ENST00000478420 TNXBP22105 4242 aa0.65□□□□□ -2.31
SMARCA1-204ENST00000478420 SPINK1P00995 79 aa0.64□□□□□ -2.31
SMARCA1-204ENST00000478420 WT1-ASQ06250 92 aa0.64□□□□□ -2.31
SMARCA1-204ENST00000478420 PRKDCP78527 4128 aaKnown RBP0.64□□□□□ -2.31
SMARCA1-204ENST00000478420 FAT2Q9NYQ8 4349 aa0.63□□□□□ -2.31
SMARCA1-204ENST00000478420 TFF3Q07654 80 aa0.63□□□□□ -2.31
SMARCA1-204ENST00000478420 SACSQ9NZJ4 4579 aa0.62□□□□□ -2.31
SMARCA1-204ENST00000478420 SYNE1Q8NF91 8797 aaKnown RBP0.62□□□□□ -2.31
SMARCA1-204ENST00000478420 RNF213Q63HN8 5207 aa0.62□□□□□ -2.31
SMARCA1-204ENST00000478420 DNAH1Q9P2D7 4330 aa0.62□□□□□ -2.31
SMARCA1-204ENST00000478420 HMCN2Q8NDA2 5059 aa0.61□□□□□ -2.31
SMARCA1-204ENST00000478420 NFAT5O94916 1531 aa0.61□□□□□ -2.31
SMARCA1-204ENST00000478420 H3BUA1 57 aa0.61□□□□□ -2.31
SMARCA1-204ENST00000478420 SNRPGP62308 76 aaKnown RBP0.61□□□□□ -2.31
SMARCA1-204ENST00000478420 DYNC2H1Q8NCM8 4307 aaKnown RBP0.6□□□□□ -2.31
SMARCA1-204ENST00000478420 NDUFA1O15239 70 aa0.6□□□□□ -2.31
SMARCA1-204ENST00000478420 DEFB124Q8NES8 71 aa0.6□□□□□ -2.31
SMARCA1-204ENST00000478420 U3KQA8 63 aa0.6□□□□□ -2.31
SMARCA1-204ENST00000478420 FAT3Q8TDW7 4589 aa0.59□□□□□ -2.31
SMARCA1-204ENST00000478420 HUWE1Q7Z6Z7 4374 aaKnown RBP0.59□□□□□ -2.31
SMARCA1-204ENST00000478420 S4R3F8 94 aa0.59□□□□□ -2.31
SMARCA1-204ENST00000478420 TRRAPQ9Y4A5 3859 aa0.59□□□□□ -2.32
SMARCA1-204ENST00000478420 CMYA5Q8N3K9 4069 aa0.58□□□□□ -2.32
SMARCA1-204ENST00000478420 PKHD1P08F94 4074 aa0.58□□□□□ -2.32
SMARCA1-204ENST00000478420 DUOX1Q9NRD9 1551 aa0.57□□□□□ -2.32
SMARCA1-204ENST00000478420 PRM1P04553 51 aa0.57□□□□□ -2.32
SMARCA1-204ENST00000478420 WFDC10BQ8IUB3 73 aa0.57□□□□□ -2.32
SMARCA1-204ENST00000478420 KMT2AQ03164 3969 aa0.56□□□□□ -2.32
SMARCA1-204ENST00000478420 IGLV5-48A0A075B6I7 105 aa0.56□□□□□ -2.32
SMARCA1-204ENST00000478420 M0R2T5 61 aa0.56□□□□□ -2.32
SMARCA1-204ENST00000478420 PRLHP81277 87 aa0.56□□□□□ -2.32
SMARCA1-204ENST00000478420 DEFB135Q30KP9 77 aa0.56□□□□□ -2.32
SMARCA1-204ENST00000478420 DEFB106AQ8N104 65 aa0.56□□□□□ -2.32
SMARCA1-204ENST00000478420 KAAG1Q9UBP8 84 aa0.56□□□□□ -2.32
SMARCA1-204ENST00000478420 HECTD4Q9Y4D8 3996 aa0.55□□□□□ -2.32
SMARCA1-204ENST00000478420 MYCBP2O75592 4640 aa0.55□□□□□ -2.32
SMARCA1-204ENST00000478420 DNAH7Q8WXX0 4024 aa0.55□□□□□ -2.32
SMARCA1-204ENST00000478420 LRP1Q07954 4544 aaKnown RBP0.55□□□□□ -2.32
SMARCA1-204ENST00000478420 LRP2P98164 4655 aa0.54□□□□□ -2.32
SMARCA1-204ENST00000478420 DYNC1H1Q14204 4646 aaKnown RBP0.54□□□□□ -2.32
SMARCA1-204ENST00000478420 DEFB131AP59861 70 aa0.54□□□□□ -2.32
SMARCA1-204ENST00000478420 HSPG2P98160 4391 aa0.54□□□□□ -2.32
SMARCA1-204ENST00000478420 PLECQ15149 4684 aaKnown RBP0.54□□□□□ -2.32
SMARCA1-204ENST00000478420 LYSTQ99698 3801 aa0.54□□□□□ -2.32
SMARCA1-204ENST00000478420 DNAH9Q9NYC9 4486 aa0.54□□□□□ -2.32
SMARCA1-204ENST00000478420 LRP1BQ9NZR2 4599 aa0.53□□□□□ -2.32
SMARCA1-204ENST00000478420 KRTAP21-1Q3LI58 79 aa0.53□□□□□ -2.32
SMARCA1-204ENST00000478420 NOP10Q9NPE3 64 aaKnown RBP0.52□□□□□ -2.33
SMARCA1-204ENST00000478420 USH2AO75445 5202 aa0.52□□□□□ -2.33
SMARCA1-204ENST00000478420 MUC12Q9UKN1 5478 aa0.52□□□□□ -2.33
SMARCA1-204ENST00000478420 DNAH10Q8IVF4 4471 aa0.51□□□□□ -2.33
SMARCA1-204ENST00000478420 MMP24-AS1A0A0U1RRL7 71 aa0.51□□□□□ -2.33
SMARCA1-204ENST00000478420 H0YGG7 62 aa0.51□□□□□ -2.33
SMARCA1-204ENST00000478420 PKHD1L1Q86WI1 4243 aa0.5□□□□□ -2.33
SMARCA1-204ENST00000478420 ANK3Q12955 4377 aaKnown RBP0.5□□□□□ -2.33
SMARCA1-204ENST00000478420 FAT1Q14517 4588 aa0.5□□□□□ -2.33
SMARCA1-204ENST00000478420 DNAH11Q96DT5 4516 aa0.49□□□□□ -2.33
SMARCA1-204ENST00000478420 GCC2Q8IWJ2 1684 aa0.49□□□□□ -2.33
SMARCA1-204ENST00000478420 POLR2KP53803 58 aaKnown RBP0.48□□□□□ -2.33
SMARCA1-204ENST00000478420 LPAP08519 4548 aa0.48□□□□□ -2.33
SMARCA1-204ENST00000478420 HRNRQ86YZ3 2850 aaPredicted RBP0.48□□□□□ -2.33
SMARCA1-204ENST00000478420 APOBP04114 4563 aaKnown RBP0.48□□□□□ -2.33
SMARCA1-204ENST00000478420 DNAH5Q8TE73 4624 aa0.47□□□□□ -2.33
SMARCA1-204ENST00000478420 A8MTW9 85 aa0.47□□□□□ -2.33
SMARCA1-204ENST00000478420 STARD9Q9P2P6 4700 aa0.47□□□□□ -2.33
SMARCA1-204ENST00000478420 DNAH6Q9C0G6 4158 aa0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms