RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 DNAH5Q8TE73 4624 aa4□□□□□ -1.77
USP48-206ENST00000464577 DNAH6Q9C0G6 4158 aa3.99□□□□□ -1.77
USP48-206ENST00000464577 A0A1B0GU33 70 aa3.97□□□□□ -1.77
USP48-206ENST00000464577 KRTAP9-7A8MTY7 169 aa3.97□□□□□ -1.77
USP48-206ENST00000464577 KRTAP25-1Q3LHN0 102 aa3.97□□□□□ -1.77
USP48-206ENST00000464577 H1FX-AS1Q4G0G2 97 aa3.96□□□□□ -1.77
USP48-206ENST00000464577 LINC00304Q8N9R0 145 aa3.96□□□□□ -1.77
USP48-206ENST00000464577 KMT2AQ03164 3969 aa3.96□□□□□ -1.78
USP48-206ENST00000464577 TGP01266 2768 aa3.96□□□□□ -1.78
USP48-206ENST00000464577 LRP1BQ9NZR2 4599 aa3.96□□□□□ -1.78
USP48-206ENST00000464577 C20orf166-AS1Q96NR2 134 aa3.96□□□□□ -1.78
USP48-206ENST00000464577 KRTAP3-1Q9BYR8 98 aa3.94□□□□□ -1.78
USP48-206ENST00000464577 KRTAP9-3Q9BYQ3 159 aa3.92□□□□□ -1.78
USP48-206ENST00000464577 SACSQ9NZJ4 4579 aa3.91□□□□□ -1.78
USP48-206ENST00000464577 K7ERS5 55 aa3.9□□□□□ -1.78
USP48-206ENST00000464577 PKD1P98161 4303 aa3.9□□□□□ -1.79
USP48-206ENST00000464577 SEC61BP60468 96 aaKnown RBP3.88□□□□□ -1.79
USP48-206ENST00000464577 ROMO1P60602 79 aa3.88□□□□□ -1.79
USP48-206ENST00000464577 COX6B2Q6YFQ2 88 aa3.88□□□□□ -1.79
USP48-206ENST00000464577 C9orf92A6NGG3 77 aa3.87□□□□□ -1.79
USP48-206ENST00000464577 FAT2Q9NYQ8 4349 aa3.86□□□□□ -1.79
USP48-206ENST00000464577 VPS13BQ7Z7G8 4022 aa3.84□□□□□ -1.79
USP48-206ENST00000464577 RPL37P61927 97 aaKnown RBP3.8□□□□□ -1.8
USP48-206ENST00000464577 PKHD1L1Q86WI1 4243 aa3.8□□□□□ -1.8
USP48-206ENST00000464577 KRTAP10-6P60371 365 aaPredicted RBP3.79□□□□□ -1.8
USP48-206ENST00000464577 KRTAP10-4P60372 401 aaPredicted RBP3.78□□□□□ -1.8
USP48-206ENST00000464577 CRIPTQ9P021 101 aa3.78□□□□□ -1.8
USP48-206ENST00000464577 APOBP04114 4563 aaKnown RBP3.76□□□□□ -1.81
USP48-206ENST00000464577 HYDINQ4G0P3 5121 aa3.75□□□□□ -1.81
USP48-206ENST00000464577 SMR3BP02814 79 aaPredicted RBP3.75□□□□□ -1.81
USP48-206ENST00000464577 P0C880 135 aa3.75□□□□□ -1.81
USP48-206ENST00000464577 KRTAP13-4Q3LI77 160 aa3.75□□□□□ -1.81
USP48-206ENST00000464577 TPRXLQ17RH7 258 aa3.73□□□□□ -1.81
USP48-206ENST00000464577 PKHD1P08F94 4074 aa3.73□□□□□ -1.81
USP48-206ENST00000464577 KRTAP23-1A1A580 65 aa3.72□□□□□ -1.81
USP48-206ENST00000464577 S4R3F8 94 aa3.72□□□□□ -1.81
USP48-206ENST00000464577 DYNC1H1Q14204 4646 aaKnown RBP3.72□□□□□ -1.81
USP48-206ENST00000464577 A0A0D9SG42 100 aa3.71□□□□□ -1.82
USP48-206ENST00000464577 A0A1B0GVY2 172 aa3.71□□□□□ -1.82
USP48-206ENST00000464577 FLG2Q5D862 2391 aaPredicted RBP3.69□□□□□ -1.82
USP48-206ENST00000464577 SPINT4Q6UDR6 99 aa3.69□□□□□ -1.82
USP48-206ENST00000464577 FAT3Q8TDW7 4589 aa3.67□□□□□ -1.82
USP48-206ENST00000464577 DNHD1Q96M86 4753 aa3.67□□□□□ -1.82
USP48-206ENST00000464577 KRTAP10-8P60410 259 aa3.66□□□□□ -1.82
USP48-206ENST00000464577 FAT1Q14517 4588 aa3.66□□□□□ -1.82
USP48-206ENST00000464577 KRTAP15-1Q3LI76 137 aa3.66□□□□□ -1.82
USP48-206ENST00000464577 C10orf95Q9H7T3 257 aa3.66□□□□□ -1.82
USP48-206ENST00000464577 KRTAP12-2P59991 146 aa3.65□□□□□ -1.83
USP48-206ENST00000464577 LRP1Q07954 4544 aaKnown RBP3.63□□□□□ -1.83
USP48-206ENST00000464577 KRTAP12-1P59990 96 aa3.63□□□□□ -1.83
USP48-206ENST00000464577 TNXBP22105 4242 aa3.62□□□□□ -1.83
USP48-206ENST00000464577 M0QZ58 72 aa3.6□□□□□ -1.83
USP48-206ENST00000464577 HSPG2P98160 4391 aa3.59□□□□□ -1.83
USP48-206ENST00000464577 DMBT1Q9UGM3 2413 aaPredicted RBP3.58□□□□□ -1.84
USP48-206ENST00000464577 NDUFAF8A1L188 74 aa3.58□□□□□ -1.84
USP48-206ENST00000464577 Q5VSD8 79 aa3.53□□□□□ -1.84
USP48-206ENST00000464577 KRTAP21-3Q3LHN1 58 aa3.52□□□□□ -1.85
USP48-206ENST00000464577 RYR2Q92736 4967 aa3.48□□□□□ -1.85
USP48-206ENST00000464577 MT1HL1P0DM35 61 aa3.48□□□□□ -1.85
USP48-206ENST00000464577 MYCBP2O75592 4640 aa3.44□□□□□ -1.86
USP48-206ENST00000464577 R4GN34 69 aa3.43□□□□□ -1.86
USP48-206ENST00000464577 PLAC4Q8WY50 150 aa3.42□□□□□ -1.86
USP48-206ENST00000464577 RYR1P21817 5038 aa3.39□□□□□ -1.87
USP48-206ENST00000464577 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.39□□□□□ -1.87
USP48-206ENST00000464577 PP632Q6XCG6 107 aa3.38□□□□□ -1.87
USP48-206ENST00000464577 KMT2CQ8NEZ4 4911 aaKnown RBP3.37□□□□□ -1.87
USP48-206ENST00000464577 LPAP08519 4548 aa3.36□□□□□ -1.87
USP48-206ENST00000464577 LRP2P98164 4655 aa3.35□□□□□ -1.87
USP48-206ENST00000464577 LUZP6Q538Z0 58 aa3.3□□□□□ -1.88
USP48-206ENST00000464577 CAMK2N1Q7Z7J9 78 aa3.28□□□□□ -1.88
USP48-206ENST00000464577 MUC17Q685J3 4493 aa3.28□□□□□ -1.88
USP48-206ENST00000464577 KIAA1109Q2LD37 5005 aa3.26□□□□□ -1.89
USP48-206ENST00000464577 KRTAP19-2Q3LHN2 52 aa3.26□□□□□ -1.89
USP48-206ENST00000464577 RYR3Q15413 4870 aa3.26□□□□□ -1.89
USP48-206ENST00000464577 KRTAP4-1Q9BYQ7 146 aa3.25□□□□□ -1.89
USP48-206ENST00000464577 SPRR5A0A1B0GTR4 108 aa3.21□□□□□ -1.9
USP48-206ENST00000464577 TNP1P09430 55 aa3.2□□□□□ -1.9
USP48-206ENST00000464577 ABCA13Q86UQ4 5058 aa3.16□□□□□ -1.9
USP48-206ENST00000464577 HERC1Q15751 4861 aa3.15□□□□□ -1.91
USP48-206ENST00000464577 EPPK1P58107 5090 aaKnown RBP3.09□□□□□ -1.92
USP48-206ENST00000464577 FLGP20930 4061 aaPredicted RBP3.08□□□□□ -1.92
USP48-206ENST00000464577 SPRR2GQ9BYE4 73 aa3.06□□□□□ -1.92
USP48-206ENST00000464577 BIRC6Q9NR09 4857 aa3.04□□□□□ -1.92
USP48-206ENST00000464577 KRTAP5-11Q6L8G4 156 aa3.03□□□□□ -1.92
USP48-206ENST00000464577 LCE3AQ5TA76 89 aa2.99□□□□□ -1.93
USP48-206ENST00000464577 KRTAP10-7P60409 375 aaPredicted RBP2.99□□□□□ -1.93
USP48-206ENST00000464577 PRO2289Q9P1D8 64 aa2.97□□□□□ -1.93
USP48-206ENST00000464577 KRTAP8-1Q8IUC2 63 aa2.96□□□□□ -1.94
USP48-206ENST00000464577 HERC2O95714 4834 aa2.96□□□□□ -1.94
USP48-206ENST00000464577 KRTAP5-9P26371 169 aa2.95□□□□□ -1.94
USP48-206ENST00000464577 INE1O15225 51 aa2.94□□□□□ -1.94
USP48-206ENST00000464577 PCLOQ9Y6V0 5065 aa2.93□□□□□ -1.94
USP48-206ENST00000464577 KRTAP19-8Q3LI54 63 aa2.91□□□□□ -1.94
USP48-206ENST00000464577 MUC2Q02817 5179 aa2.9□□□□□ -1.95
USP48-206ENST00000464577 MT2AP02795 61 aa2.89□□□□□ -1.95
USP48-206ENST00000464577 MT1FP04733 61 aa2.89□□□□□ -1.95
USP48-206ENST00000464577 MT1HP80294 61 aa2.89□□□□□ -1.95
USP48-206ENST00000464577 M0R2T5 61 aa2.88□□□□□ -1.95
USP48-206ENST00000464577 KRTAP10-10P60014 251 aa2.86□□□□□ -1.95
USP48-206ENST00000464577 KRTAP5-4Q6L8H1 288 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms