RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 SACSQ9NZJ4 4579 aa4.86□□□□□ -1.63
VPS50-208ENST00000458707 KRTAP16-1A8MUX0 517 aa4.86□□□□□ -1.63
VPS50-208ENST00000458707 KMT2AQ03164 3969 aa4.85□□□□□ -1.63
VPS50-208ENST00000458707 A0A1B0GU69 56 aa4.85□□□□□ -1.63
VPS50-208ENST00000458707 P0C880 135 aa4.85□□□□□ -1.63
VPS50-208ENST00000458707 DNAH2Q9P225 4427 aa4.84□□□□□ -1.63
VPS50-208ENST00000458707 KRTAP13-2Q52LG2 175 aa4.82□□□□□ -1.64
VPS50-208ENST00000458707 UQCR11O14957 56 aa4.81□□□□□ -1.64
VPS50-208ENST00000458707 DNAH6Q9C0G6 4158 aa4.79□□□□□ -1.64
VPS50-208ENST00000458707 IGKV2D-30A0A075B6S6 120 aa4.77□□□□□ -1.65
VPS50-208ENST00000458707 DNAH11Q96DT5 4516 aa4.77□□□□□ -1.65
VPS50-208ENST00000458707 Q6ZSA8 131 aa4.76□□□□□ -1.65
VPS50-208ENST00000458707 KRTAP1-4P0C5Y4 121 aa4.75□□□□□ -1.65
VPS50-208ENST00000458707 KRTAP3-1Q9BYR8 98 aa4.75□□□□□ -1.65
VPS50-208ENST00000458707 DNAH5Q8TE73 4624 aa4.75□□□□□ -1.65
VPS50-208ENST00000458707 A8MUU9 505 aa4.71□□□□□ -1.66
VPS50-208ENST00000458707 C20orf166-AS1Q96NR2 134 aa4.71□□□□□ -1.66
VPS50-208ENST00000458707 PKD1P98161 4303 aa4.71□□□□□ -1.66
VPS50-208ENST00000458707 ABCA13Q86UQ4 5058 aa4.71□□□□□ -1.66
VPS50-208ENST00000458707 SEC61BP60468 96 aaKnown RBP4.71□□□□□ -1.66
VPS50-208ENST00000458707 SPINK1P00995 79 aa4.7□□□□□ -1.66
VPS50-208ENST00000458707 KRTAP10-1P60331 282 aa4.7□□□□□ -1.66
VPS50-208ENST00000458707 KIAA1109Q2LD37 5005 aa4.7□□□□□ -1.66
VPS50-208ENST00000458707 LY6G6CO95867 125 aa4.69□□□□□ -1.66
VPS50-208ENST00000458707 HERC1Q15751 4861 aa4.68□□□□□ -1.66
VPS50-208ENST00000458707 RPS29P62273 56 aaKnown RBP4.67□□□□□ -1.66
VPS50-208ENST00000458707 TYMSOSQ8TAI1 123 aa4.66□□□□□ -1.66
VPS50-208ENST00000458707 LRP1BQ9NZR2 4599 aa4.66□□□□□ -1.66
VPS50-208ENST00000458707 VPS13BQ7Z7G8 4022 aa4.66□□□□□ -1.66
VPS50-208ENST00000458707 Q8N1X5 172 aa4.65□□□□□ -1.66
VPS50-208ENST00000458707 NDUFAF8A1L188 74 aa4.62□□□□□ -1.67
VPS50-208ENST00000458707 KRTAP15-1Q3LI76 137 aa4.62□□□□□ -1.67
VPS50-208ENST00000458707 LINC00304Q8N9R0 145 aa4.62□□□□□ -1.67
VPS50-208ENST00000458707 FAT2Q9NYQ8 4349 aa4.61□□□□□ -1.67
VPS50-208ENST00000458707 H0YAA0 97 aa4.61□□□□□ -1.67
VPS50-208ENST00000458707 K7ERS5 55 aa4.59□□□□□ -1.67
VPS50-208ENST00000458707 LUZP6Q538Z0 58 aa4.59□□□□□ -1.67
VPS50-208ENST00000458707 A0A1B0GU33 70 aa4.56□□□□□ -1.68
VPS50-208ENST00000458707 H1FX-AS1Q4G0G2 97 aa4.55□□□□□ -1.68
VPS50-208ENST00000458707 PKHD1L1Q86WI1 4243 aa4.52□□□□□ -1.69
VPS50-208ENST00000458707 C9orf92A6NGG3 77 aa4.52□□□□□ -1.69
VPS50-208ENST00000458707 SPINT4Q6UDR6 99 aa4.52□□□□□ -1.69
VPS50-208ENST00000458707 PKHD1P08F94 4074 aa4.48□□□□□ -1.69
VPS50-208ENST00000458707 COX6B2Q6YFQ2 88 aa4.48□□□□□ -1.69
VPS50-208ENST00000458707 KRTAP10-4P60372 401 aaPredicted RBP4.46□□□□□ -1.7
VPS50-208ENST00000458707 APOBP04114 4563 aaKnown RBP4.45□□□□□ -1.7
VPS50-208ENST00000458707 DMBT1Q9UGM3 2413 aaPredicted RBP4.44□□□□□ -1.7
VPS50-208ENST00000458707 SMR3BP02814 79 aaPredicted RBP4.42□□□□□ -1.7
VPS50-208ENST00000458707 FLG2Q5D862 2391 aaPredicted RBP4.41□□□□□ -1.7
VPS50-208ENST00000458707 KRTAP10-6P60371 365 aaPredicted RBP4.39□□□□□ -1.71
VPS50-208ENST00000458707 DYNC1H1Q14204 4646 aaKnown RBP4.38□□□□□ -1.71
VPS50-208ENST00000458707 A0A1B0GVY2 172 aa4.38□□□□□ -1.71
VPS50-208ENST00000458707 TPRXLQ17RH7 258 aa4.37□□□□□ -1.71
VPS50-208ENST00000458707 RPL37P61927 97 aaKnown RBP4.37□□□□□ -1.71
VPS50-208ENST00000458707 CRIPTQ9P021 101 aa4.36□□□□□ -1.71
VPS50-208ENST00000458707 HSPG2P98160 4391 aa4.35□□□□□ -1.71
VPS50-208ENST00000458707 KRTAP13-4Q3LI77 160 aa4.34□□□□□ -1.71
VPS50-208ENST00000458707 FAT1Q14517 4588 aa4.32□□□□□ -1.72
VPS50-208ENST00000458707 TNXBP22105 4242 aa4.32□□□□□ -1.72
VPS50-208ENST00000458707 CAMK2N1Q7Z7J9 78 aa4.3□□□□□ -1.72
VPS50-208ENST00000458707 FAT3Q8TDW7 4589 aa4.3□□□□□ -1.72
VPS50-208ENST00000458707 S4R3F8 94 aa4.3□□□□□ -1.72
VPS50-208ENST00000458707 HMCN2Q8NDA2 5059 aa4.29□□□□□ -1.72
VPS50-208ENST00000458707 KRTAP10-8P60410 259 aa4.28□□□□□ -1.72
VPS50-208ENST00000458707 LRP1Q07954 4544 aaKnown RBP4.27□□□□□ -1.73
VPS50-208ENST00000458707 A0A0D9SG42 100 aa4.26□□□□□ -1.73
VPS50-208ENST00000458707 RNF213Q63HN8 5207 aa4.24□□□□□ -1.73
VPS50-208ENST00000458707 MUC2Q02817 5179 aa4.22□□□□□ -1.73
VPS50-208ENST00000458707 KRTAP12-2P59991 146 aa4.21□□□□□ -1.74
VPS50-208ENST00000458707 MYCBP2O75592 4640 aa4.21□□□□□ -1.74
VPS50-208ENST00000458707 KRTAP12-1P59990 96 aa4.19□□□□□ -1.74
VPS50-208ENST00000458707 C10orf95Q9H7T3 257 aa4.19□□□□□ -1.74
VPS50-208ENST00000458707 Q5VSD8 79 aa4.16□□□□□ -1.74
VPS50-208ENST00000458707 M0QZ58 72 aa4.15□□□□□ -1.74
VPS50-208ENST00000458707 KRTAP23-1A1A580 65 aa4.13□□□□□ -1.75
VPS50-208ENST00000458707 FAT4Q6V0I7 4981 aa4.13□□□□□ -1.75
VPS50-208ENST00000458707 MT1HL1P0DM35 61 aa4.11□□□□□ -1.75
VPS50-208ENST00000458707 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.1□□□□□ -1.75
VPS50-208ENST00000458707 PLAC4Q8WY50 150 aa4.08□□□□□ -1.76
VPS50-208ENST00000458707 PRO2289Q9P1D8 64 aa4.07□□□□□ -1.76
VPS50-208ENST00000458707 CRCT1Q9UGL9 99 aa4.07□□□□□ -1.76
VPS50-208ENST00000458707 LPAP08519 4548 aa4.03□□□□□ -1.77
VPS50-208ENST00000458707 LRP2P98164 4655 aa4.02□□□□□ -1.77
VPS50-208ENST00000458707 FSIP2Q5CZC0 6907 aa3.98□□□□□ -1.77
VPS50-208ENST00000458707 R4GN34 69 aa3.98□□□□□ -1.77
VPS50-208ENST00000458707 MUC17Q685J3 4493 aa3.9□□□□□ -1.78
VPS50-208ENST00000458707 LCE1AQ5T7P2 110 aa3.9□□□□□ -1.79
VPS50-208ENST00000458707 INE1O15225 51 aa3.88□□□□□ -1.79
VPS50-208ENST00000458707 KRTAP5-9P26371 169 aa3.88□□□□□ -1.79
VPS50-208ENST00000458707 PP632Q6XCG6 107 aa3.86□□□□□ -1.79
VPS50-208ENST00000458707 KRTAP10-7P60409 375 aaPredicted RBP3.86□□□□□ -1.79
VPS50-208ENST00000458707 KRTAP19-2Q3LHN2 52 aa3.85□□□□□ -1.79
VPS50-208ENST00000458707 KRTAP5-11Q6L8G4 156 aa3.85□□□□□ -1.79
VPS50-208ENST00000458707 KRTAP4-1Q9BYQ7 146 aa3.84□□□□□ -1.79
VPS50-208ENST00000458707 SPRR5A0A1B0GTR4 108 aa3.79□□□□□ -1.8
VPS50-208ENST00000458707 FLGP20930 4061 aaPredicted RBP3.71□□□□□ -1.82
VPS50-208ENST00000458707 TNP1P09430 55 aa3.69□□□□□ -1.82
VPS50-208ENST00000458707 KRTAP2-2Q9BYT5 123 aa3.67□□□□□ -1.82
VPS50-208ENST00000458707 LCE1EQ5T753 118 aa3.66□□□□□ -1.82
VPS50-208ENST00000458707 SPRR2GQ9BYE4 73 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 191.7 ms