RNA–Protein interactions for RNA: ENST00000458013.6

SNX27-204, Transcript of sorting nexin family member 27, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SNX27, Length 6,403 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-204ENST00000458013 OTOGQ6ZRI0 2925 aa8.27□□□□□ -1.09
SNX27-204ENST00000458013 KRTAP8-1Q8IUC2 63 aa8.17□□□□□ -1.1
SNX27-204ENST00000458013 COL7A1Q02388 2944 aa8.13□□□□□ -1.11
SNX27-204ENST00000458013 SRRM2Q9UQ35 2752 aaKnown RBP8.06□□□□□ -1.12
SNX27-204ENST00000458013 DNAH9Q9NYC9 4486 aa8.03□□□□□ -1.12
SNX27-204ENST00000458013 DNAH1Q9P2D7 4330 aa8.03□□□□□ -1.12
SNX27-204ENST00000458013 KRTAP4-1Q9BYQ7 146 aa7.94□□□□□ -1.14
SNX27-204ENST00000458013 ZNF469Q96JG9 3925 aaPredicted RBP7.94□□□□□ -1.14
SNX27-204ENST00000458013 KRTAP23-1A1A580 65 aa7.92□□□□□ -1.14
SNX27-204ENST00000458013 DNAH10Q8IVF4 4471 aa7.92□□□□□ -1.14
SNX27-204ENST00000458013 DNAH2Q9P225 4427 aa7.87□□□□□ -1.15
SNX27-204ENST00000458013 MT1HP80294 61 aa7.81□□□□□ -1.16
SNX27-204ENST00000458013 DNAH3Q8TD57 4116 aa7.78□□□□□ -1.16
SNX27-204ENST00000458013 DNAH5Q8TE73 4624 aa7.74□□□□□ -1.17
SNX27-204ENST00000458013 ANK2Q01484 3957 aa7.71□□□□□ -1.17
SNX27-204ENST00000458013 DNAH8Q96JB1 4490 aa7.7□□□□□ -1.18
SNX27-204ENST00000458013 PLECQ15149 4684 aaKnown RBP7.7□□□□□ -1.18
SNX27-204ENST00000458013 KRTAP19-5Q3LI72 72 aa7.68□□□□□ -1.18
SNX27-204ENST00000458013 FRAS1Q86XX4 4008 aa7.67□□□□□ -1.18
SNX27-204ENST00000458013 SPRR2FQ96RM1 72 aa7.64□□□□□ -1.19
SNX27-204ENST00000458013 MT2AP02795 61 aa7.62□□□□□ -1.19
SNX27-204ENST00000458013 DNAH11Q96DT5 4516 aa7.62□□□□□ -1.19
SNX27-204ENST00000458013 DNAH17Q9UFH2 4485 aa7.55□□□□□ -1.2
SNX27-204ENST00000458013 MT1FP04733 61 aa7.54□□□□□ -1.2
SNX27-204ENST00000458013 FAT2Q9NYQ8 4349 aa7.52□□□□□ -1.21
SNX27-204ENST00000458013 KRTAP10-7P60409 375 aaPredicted RBP7.5□□□□□ -1.21
SNX27-204ENST00000458013 VPS13DQ5THJ4 4388 aa7.46□□□□□ -1.22
SNX27-204ENST00000458013 KMT2AQ03164 3969 aa7.46□□□□□ -1.22
SNX27-204ENST00000458013 LCE3CQ5T5A8 94 aa7.45□□□□□ -1.22
SNX27-204ENST00000458013 STARD9Q9P2P6 4700 aa7.44□□□□□ -1.22
SNX27-204ENST00000458013 SPRR2GQ9BYE4 73 aa7.41□□□□□ -1.22
SNX27-204ENST00000458013 LRP1BQ9NZR2 4599 aa7.39□□□□□ -1.23
SNX27-204ENST00000458013 VPS13BQ7Z7G8 4022 aa7.37□□□□□ -1.23
SNX27-204ENST00000458013 DYNC2H1Q8NCM8 4307 aaKnown RBP7.34□□□□□ -1.23
SNX27-204ENST00000458013 PRKDCP78527 4128 aaKnown RBP7.34□□□□□ -1.24
SNX27-204ENST00000458013 DNAH7Q8WXX0 4024 aa7.33□□□□□ -1.24
SNX27-204ENST00000458013 CMYA5Q8N3K9 4069 aa7.31□□□□□ -1.24
SNX27-204ENST00000458013 LCE3BQ5TA77 95 aa7.29□□□□□ -1.24
SNX27-204ENST00000458013 SACSQ9NZJ4 4579 aa7.29□□□□□ -1.24
SNX27-204ENST00000458013 FAT1Q14517 4588 aa7.29□□□□□ -1.24
SNX27-204ENST00000458013 DYNC1H1Q14204 4646 aaKnown RBP7.23□□□□□ -1.25
SNX27-204ENST00000458013 SPRR2EP22531 72 aa7.22□□□□□ -1.25
SNX27-204ENST00000458013 SPRR2BP35325 72 aa7.22□□□□□ -1.25
SNX27-204ENST00000458013 SPRR2AP35326 72 aa7.22□□□□□ -1.25
SNX27-204ENST00000458013 DNAH6Q9C0G6 4158 aa7.2□□□□□ -1.26
SNX27-204ENST00000458013 LYSTQ99698 3801 aa7.18□□□□□ -1.26
SNX27-204ENST00000458013 MT1GP13640 62 aa7.13□□□□□ -1.27
SNX27-204ENST00000458013 APOBP04114 4563 aaKnown RBP7.06□□□□□ -1.28
SNX27-204ENST00000458013 KRTAP17-1Q9BYP8 105 aa6.96□□□□□ -1.3
SNX27-204ENST00000458013 SPRR2DP22532 72 aa6.94□□□□□ -1.3
SNX27-204ENST00000458013 HECTD4Q9Y4D8 3996 aa6.93□□□□□ -1.3
SNX27-204ENST00000458013 KRTAP4-8A0A0G2JLE6 195 aa6.93□□□□□ -1.3
SNX27-204ENST00000458013 KRTAP4-8Q9BYQ9 185 aa6.93□□□□□ -1.3
SNX27-204ENST00000458013 RYR1P21817 5038 aa6.91□□□□□ -1.3
SNX27-204ENST00000458013 KRTAP12-4P60329 112 aa6.9□□□□□ -1.31
SNX27-204ENST00000458013 MT1XP80297 61 aa6.88□□□□□ -1.31
SNX27-204ENST00000458013 DNHD1Q96M86 4753 aa6.86□□□□□ -1.31
SNX27-204ENST00000458013 KRTAP19-1Q8IUB9 90 aa6.84□□□□□ -1.31
SNX27-204ENST00000458013 FAT3Q8TDW7 4589 aa6.82□□□□□ -1.32
SNX27-204ENST00000458013 LCE2BO14633 110 aa6.8□□□□□ -1.32
SNX27-204ENST00000458013 LPAP08519 4548 aa6.75□□□□□ -1.33
SNX27-204ENST00000458013 KRTAP19-8Q3LI54 63 aa6.72□□□□□ -1.33
SNX27-204ENST00000458013 MT1BP07438 61 aa6.7□□□□□ -1.34
SNX27-204ENST00000458013 KRTAP4-7Q9BYR0 210 aa6.67□□□□□ -1.34
SNX27-204ENST00000458013 RYR3Q15413 4870 aa6.65□□□□□ -1.34
SNX27-204ENST00000458013 MYCBP2O75592 4640 aa6.63□□□□□ -1.35
SNX27-204ENST00000458013 PKD1P98161 4303 aa6.62□□□□□ -1.35
SNX27-204ENST00000458013 KRTAP9-8Q9BYQ0 159 aa6.6□□□□□ -1.35
SNX27-204ENST00000458013 LRP1Q07954 4544 aaKnown RBP6.59□□□□□ -1.35
SNX27-204ENST00000458013 LCE3DQ9BYE3 92 aa6.59□□□□□ -1.35
SNX27-204ENST00000458013 HSPG2P98160 4391 aa6.56□□□□□ -1.36
SNX27-204ENST00000458013 KRTAP9-3Q9BYQ3 159 aa6.45□□□□□ -1.38
SNX27-204ENST00000458013 KRTAP19-4Q3LI73 84 aa6.44□□□□□ -1.38
SNX27-204ENST00000458013 PKHD1L1Q86WI1 4243 aa6.42□□□□□ -1.38
SNX27-204ENST00000458013 LCE3EQ5T5B0 92 aa6.42□□□□□ -1.38
SNX27-204ENST00000458013 LOC100996750A0A140TA64 210 aa6.37□□□□□ -1.39
SNX27-204ENST00000458013 LCE2CQ5TA81 110 aa6.37□□□□□ -1.39
SNX27-204ENST00000458013 MT4P47944 62 aa6.37□□□□□ -1.39
SNX27-204ENST00000458013 TNXBP22105 4242 aa6.36□□□□□ -1.39
SNX27-204ENST00000458013 LCE2DQ5TA82 110 aaPredicted RBP6.33□□□□□ -1.4
SNX27-204ENST00000458013 HYDINQ4G0P3 5121 aa6.31□□□□□ -1.4
SNX27-204ENST00000458013 PKHD1P08F94 4074 aa6.29□□□□□ -1.4
SNX27-204ENST00000458013 SPRR5A0A1B0GTR4 108 aa6.29□□□□□ -1.4
SNX27-204ENST00000458013 KRTAP19-3Q7Z4W3 81 aa6.28□□□□□ -1.4
SNX27-204ENST00000458013 MT1LQ93083 61 aa6.25□□□□□ -1.41
SNX27-204ENST00000458013 KRTAP4-3Q9BYR4 195 aa6.24□□□□□ -1.41
SNX27-204ENST00000458013 PRM1P04553 51 aa6.24□□□□□ -1.41
SNX27-204ENST00000458013 MT1EP04732 61 aa6.16□□□□□ -1.42
SNX27-204ENST00000458013 LCE1BQ5T7P3 118 aa6.14□□□□□ -1.43
SNX27-204ENST00000458013 HERC1Q15751 4861 aa6.14□□□□□ -1.43
SNX27-204ENST00000458013 LRP2P98164 4655 aa6.12□□□□□ -1.43
SNX27-204ENST00000458013 RYR2Q92736 4967 aa6.09□□□□□ -1.43
SNX27-204ENST00000458013 LCE1DQ5T752 114 aa6.05□□□□□ -1.44
SNX27-204ENST00000458013 FLGP20930 4061 aaPredicted RBP6.04□□□□□ -1.44
SNX27-204ENST00000458013 MUC17Q685J3 4493 aa6.04□□□□□ -1.44
SNX27-204ENST00000458013 MT1MQ8N339 61 aa6.03□□□□□ -1.44
SNX27-204ENST00000458013 KRTAP4-9Q9BYQ8 210 aa5.99□□□□□ -1.45
SNX27-204ENST00000458013 MT3P25713 68 aa5.93□□□□□ -1.46
SNX27-204ENST00000458013 HERC2O95714 4834 aa5.91□□□□□ -1.46
SNX27-204ENST00000458013 KIAA1109Q2LD37 5005 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms