RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 H3BNG1 76 aa2.65□□□□□ -1.98
CCDC88A-209ENST00000456975 DEFB130BP0DP73 79 aa2.65□□□□□ -1.98
CCDC88A-209ENST00000456975 DEFB130AP0DP74 79 aa2.65□□□□□ -1.98
CCDC88A-209ENST00000456975 WFDC10BQ8IUB3 73 aa2.65□□□□□ -1.98
CCDC88A-209ENST00000456975 FAT2Q9NYQ8 4349 aa2.65□□□□□ -1.98
CCDC88A-209ENST00000456975 ANGP03950 147 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-209ENST00000456975 HTN3P15516 51 aa2.64□□□□□ -1.99
CCDC88A-209ENST00000456975 SPACA4Q8TDM5 124 aa2.64□□□□□ -1.99
CCDC88A-209ENST00000456975 DNAH2Q9P225 4427 aa2.64□□□□□ -1.99
CCDC88A-209ENST00000456975 IGKV2-24A0A0C4DH68 120 aa2.64□□□□□ -1.99
CCDC88A-209ENST00000456975 TPRXLQ17RH7 258 aa2.64□□□□□ -1.99
CCDC88A-209ENST00000456975 DMBT1Q9UGM3 2413 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-209ENST00000456975 PRO0255Q9UI72 69 aa2.63□□□□□ -1.99
CCDC88A-209ENST00000456975 PKD1P98161 4303 aa2.63□□□□□ -1.99
CCDC88A-209ENST00000456975 A0A096LPF7 62 aa2.62□□□□□ -1.99
CCDC88A-209ENST00000456975 DNAH17Q9UFH2 4485 aa2.62□□□□□ -1.99
CCDC88A-209ENST00000456975 TP53AIP1Q9HCN2 124 aa2.62□□□□□ -1.99
CCDC88A-209ENST00000456975 TOMM7Q9P0U1 55 aa2.62□□□□□ -1.99
CCDC88A-209ENST00000456975 C6orf48Q9UBA6 75 aa2.61□□□□□ -1.99
CCDC88A-209ENST00000456975 Q6ZRX8 168 aa2.59□□□□□ -1.99
CCDC88A-209ENST00000456975 ANAPC11Q9NYG5 84 aa2.59□□□□□ -1.99
CCDC88A-209ENST00000456975 UBE2DNLQ8IWF7 75 aa2.58□□□□□ -2
CCDC88A-209ENST00000456975 APOBP04114 4563 aaKnown RBP2.58□□□□□ -2
CCDC88A-209ENST00000456975 LELP1Q5T871 98 aa2.58□□□□□ -2
CCDC88A-209ENST00000456975 KRTAP1-5Q9BYS1 174 aa2.58□□□□□ -2
CCDC88A-209ENST00000456975 LRP1BQ9NZR2 4599 aa2.57□□□□□ -2
CCDC88A-209ENST00000456975 H0YAA0 97 aa2.57□□□□□ -2
CCDC88A-209ENST00000456975 LINC01556Q5JQF7 62 aa2.57□□□□□ -2
CCDC88A-209ENST00000456975 LCE1FQ5T754 118 aa2.57□□□□□ -2
CCDC88A-209ENST00000456975 KRTAP10-8P60410 259 aa2.56□□□□□ -2
CCDC88A-209ENST00000456975 Q5VSD8 79 aa2.56□□□□□ -2
CCDC88A-209ENST00000456975 FLG2Q5D862 2391 aaPredicted RBP2.56□□□□□ -2
CCDC88A-209ENST00000456975 Q6ZRN7 208 aaPredicted RBP2.56□□□□□ -2
CCDC88A-209ENST00000456975 MYCBP2O75592 4640 aa2.55□□□□□ -2
CCDC88A-209ENST00000456975 MT3P25713 68 aa2.54□□□□□ -2
CCDC88A-209ENST00000456975 PLAC4Q8WY50 150 aa2.54□□□□□ -2
CCDC88A-209ENST00000456975 Q6ZSA8 131 aa2.53□□□□□ -2
CCDC88A-209ENST00000456975 HMCN2Q8NDA2 5059 aa2.52□□□□□ -2.01
CCDC88A-209ENST00000456975 IGFL1Q6UW32 110 aa2.52□□□□□ -2.01
CCDC88A-209ENST00000456975 GVQW2A0A096LPI5 108 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-209ENST00000456975 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-209ENST00000456975 DNAH5Q8TE73 4624 aa2.51□□□□□ -2.01
CCDC88A-209ENST00000456975 MMP24-AS1A0A0U1RRL7 71 aa2.51□□□□□ -2.01
CCDC88A-209ENST00000456975 SMR3BP02814 79 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-209ENST00000456975 INE1O15225 51 aa2.5□□□□□ -2.01
CCDC88A-209ENST00000456975 FAT1Q14517 4588 aa2.5□□□□□ -2.01
CCDC88A-209ENST00000456975 DEFB105AQ8NG35 78 aa2.49□□□□□ -2.01
CCDC88A-209ENST00000456975 MRPL34Q9BQ48 92 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-209ENST00000456975 C10orf95Q9H7T3 257 aa2.49□□□□□ -2.01
CCDC88A-209ENST00000456975 VPS13BQ7Z7G8 4022 aa2.48□□□□□ -2.01
CCDC88A-209ENST00000456975 CLPSL2Q6UWE3 100 aa2.48□□□□□ -2.01
CCDC88A-209ENST00000456975 KRTAP10-1P60331 282 aa2.47□□□□□ -2.01
CCDC88A-209ENST00000456975 RNF213Q63HN8 5207 aa2.46□□□□□ -2.02
CCDC88A-209ENST00000456975 SRRM2Q9UQ35 2752 aaKnown RBP2.46□□□□□ -2.02
CCDC88A-209ENST00000456975 KRTAP2-2Q9BYT5 123 aa2.46□□□□□ -2.02
CCDC88A-209ENST00000456975 KRTAP1-4P0C5Y4 121 aa2.45□□□□□ -2.02
CCDC88A-209ENST00000456975 COX6B2Q6YFQ2 88 aa2.44□□□□□ -2.02
CCDC88A-209ENST00000456975 DNAH8Q96JB1 4490 aa2.43□□□□□ -2.02
CCDC88A-209ENST00000456975 KRTAP13-3Q3SY46 172 aa2.42□□□□□ -2.02
CCDC88A-209ENST00000456975 H1FX-AS1Q4G0G2 97 aa2.42□□□□□ -2.02
CCDC88A-209ENST00000456975 LRP1Q07954 4544 aaKnown RBP2.41□□□□□ -2.02
CCDC88A-209ENST00000456975 UNQ6190/PRO20217Q6UXQ8 127 aa2.41□□□□□ -2.02
CCDC88A-209ENST00000456975 FAT3Q8TDW7 4589 aa2.41□□□□□ -2.02
CCDC88A-209ENST00000456975 LCE3CQ5T5A8 94 aa2.4□□□□□ -2.03
CCDC88A-209ENST00000456975 PKHD1L1Q86WI1 4243 aa2.4□□□□□ -2.03
CCDC88A-209ENST00000456975 A0A096LNI7 61 aa2.4□□□□□ -2.03
CCDC88A-209ENST00000456975 KRTAP10-4P60372 401 aaPredicted RBP2.4□□□□□ -2.03
CCDC88A-209ENST00000456975 RPL37P61927 97 aaKnown RBP2.4□□□□□ -2.03
CCDC88A-209ENST00000456975 LRP2P98164 4655 aa2.39□□□□□ -2.03
CCDC88A-209ENST00000456975 KRTAP12-2P59991 146 aa2.38□□□□□ -2.03
CCDC88A-209ENST00000456975 KRTAP5-9P26371 169 aa2.36□□□□□ -2.03
CCDC88A-209ENST00000456975 TNXBP22105 4242 aa2.34□□□□□ -2.03
CCDC88A-209ENST00000456975 MT1HL1P0DM35 61 aa2.34□□□□□ -2.03
CCDC88A-209ENST00000456975 SPRR1AP35321 89 aa2.34□□□□□ -2.04
CCDC88A-209ENST00000456975 KRTAP10-12P60413 245 aa2.34□□□□□ -2.04
CCDC88A-209ENST00000456975 PRLHP81277 87 aa2.33□□□□□ -2.04
CCDC88A-209ENST00000456975 FAT4Q6V0I7 4981 aa2.33□□□□□ -2.04
CCDC88A-209ENST00000456975 SPINK6Q6UWN8 80 aa2.32□□□□□ -2.04
CCDC88A-209ENST00000456975 PP632Q6XCG6 107 aa2.3□□□□□ -2.04
CCDC88A-209ENST00000456975 KRTAP13-1Q8IUC0 172 aa2.3□□□□□ -2.04
CCDC88A-209ENST00000456975 SPINK1P00995 79 aa2.29□□□□□ -2.04
CCDC88A-209ENST00000456975 LPAP08519 4548 aa2.28□□□□□ -2.04
CCDC88A-209ENST00000456975 CRCT1Q9UGL9 99 aa2.27□□□□□ -2.05
CCDC88A-209ENST00000456975 MUC2Q02817 5179 aa2.27□□□□□ -2.05
CCDC88A-209ENST00000456975 KRTAP13-2Q52LG2 175 aa2.25□□□□□ -2.05
CCDC88A-209ENST00000456975 SPRR1BP22528 89 aa2.25□□□□□ -2.05
CCDC88A-209ENST00000456975 S4R3F8 94 aa2.24□□□□□ -2.05
CCDC88A-209ENST00000456975 FSIP2Q5CZC0 6907 aa2.23□□□□□ -2.05
CCDC88A-209ENST00000456975 SPRR5A0A1B0GTR4 108 aa2.23□□□□□ -2.05
CCDC88A-209ENST00000456975 LCE3EQ5T5B0 92 aa2.22□□□□□ -2.05
CCDC88A-209ENST00000456975 A0A0D9SG42 100 aa2.19□□□□□ -2.06
CCDC88A-209ENST00000456975 KRTAP10-6P60371 365 aaPredicted RBP2.19□□□□□ -2.06
CCDC88A-209ENST00000456975 RPS29P62273 56 aaKnown RBP2.17□□□□□ -2.06
CCDC88A-209ENST00000456975 KRTAP13-4Q3LI77 160 aa2.17□□□□□ -2.06
CCDC88A-209ENST00000456975 KRTAP5-4Q6L8H1 288 aa2.14□□□□□ -2.07
CCDC88A-209ENST00000456975 MUC17Q685J3 4493 aa2.12□□□□□ -2.07
CCDC88A-209ENST00000456975 KRTAP12-1P59990 96 aa2.12□□□□□ -2.07
CCDC88A-209ENST00000456975 KRTAP10-5P60370 271 aa2.07□□□□□ -2.08
CCDC88A-209ENST00000456975 C9orf92A6NGG3 77 aa2.05□□□□□ -2.08
CCDC88A-209ENST00000456975 KRTAP4-1Q9BYQ7 146 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms