RNA–Protein interactions for RNA: ENST00000453091.6

RIF1-206, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 8,053 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-206ENST00000453091 DNAH1Q9P2D7 4330 aa3.46□□□□□ -1.85
RIF1-206ENST00000453091 SACSQ9NZJ4 4579 aa3.45□□□□□ -1.86
RIF1-206ENST00000453091 FBN3Q75N90 2809 aa3.45□□□□□ -1.86
RIF1-206ENST00000453091 SRRM2Q9UQ35 2752 aaKnown RBP3.45□□□□□ -1.86
RIF1-206ENST00000453091 DNAH8Q96JB1 4490 aa3.43□□□□□ -1.86
RIF1-206ENST00000453091 LRP1BQ9NZR2 4599 aa3.42□□□□□ -1.86
RIF1-206ENST00000453091 RYR1P21817 5038 aa3.42□□□□□ -1.86
RIF1-206ENST00000453091 DNAH17Q9UFH2 4485 aa3.41□□□□□ -1.86
RIF1-206ENST00000453091 ZNF469Q96JG9 3925 aaPredicted RBP3.41□□□□□ -1.86
RIF1-206ENST00000453091 AKAP9Q99996 3911 aa3.4□□□□□ -1.86
RIF1-206ENST00000453091 LCE3AQ5TA76 89 aa3.39□□□□□ -1.87
RIF1-206ENST00000453091 ALMS1Q8TCU4 4167 aa3.38□□□□□ -1.87
RIF1-206ENST00000453091 KRTAP4-1Q9BYQ7 146 aa3.38□□□□□ -1.87
RIF1-206ENST00000453091 STARD9Q9P2P6 4700 aa3.36□□□□□ -1.87
RIF1-206ENST00000453091 MEGF8Q7Z7M0 2845 aa3.35□□□□□ -1.87
RIF1-206ENST00000453091 VPS13DQ5THJ4 4388 aa3.34□□□□□ -1.87
RIF1-206ENST00000453091 KRTAP10-12P60413 245 aa3.32□□□□□ -1.88
RIF1-206ENST00000453091 KRTAP17-1Q9BYP8 105 aa3.3□□□□□ -1.88
RIF1-206ENST00000453091 DNAH2Q9P225 4427 aa3.3□□□□□ -1.88
RIF1-206ENST00000453091 APOBP04114 4563 aaKnown RBP3.28□□□□□ -1.88
RIF1-206ENST00000453091 KRTAP12-3P60328 96 aa3.27□□□□□ -1.89
RIF1-206ENST00000453091 KIAA1109Q2LD37 5005 aa3.24□□□□□ -1.89
RIF1-206ENST00000453091 HYDINQ4G0P3 5121 aa3.21□□□□□ -1.9
RIF1-206ENST00000453091 RYR3Q15413 4870 aa3.21□□□□□ -1.9
RIF1-206ENST00000453091 DYNC2H1Q8NCM8 4307 aaKnown RBP3.21□□□□□ -1.9
RIF1-206ENST00000453091 INE1O15225 51 aa3.2□□□□□ -1.9
RIF1-206ENST00000453091 RYR2Q92736 4967 aa3.19□□□□□ -1.9
RIF1-206ENST00000453091 MT1HP80294 61 aa3.17□□□□□ -1.9
RIF1-206ENST00000453091 FAT3Q8TDW7 4589 aa3.16□□□□□ -1.9
RIF1-206ENST00000453091 MYCBP2O75592 4640 aa3.15□□□□□ -1.9
RIF1-206ENST00000453091 COL7A1Q02388 2944 aa3.15□□□□□ -1.91
RIF1-206ENST00000453091 FAT2Q9NYQ8 4349 aa3.14□□□□□ -1.91
RIF1-206ENST00000453091 KRTAP10-5P60370 271 aa3.12□□□□□ -1.91
RIF1-206ENST00000453091 ANK2Q01484 3957 aa3.12□□□□□ -1.91
RIF1-206ENST00000453091 MT2AP02795 61 aa3.11□□□□□ -1.91
RIF1-206ENST00000453091 MT1FP04733 61 aa3.11□□□□□ -1.91
RIF1-206ENST00000453091 LRP1Q07954 4544 aaKnown RBP3.11□□□□□ -1.91
RIF1-206ENST00000453091 PRKDCP78527 4128 aaKnown RBP3.06□□□□□ -1.92
RIF1-206ENST00000453091 DNAH3Q8TD57 4116 aa3.06□□□□□ -1.92
RIF1-206ENST00000453091 KRTAP8-1Q8IUC2 63 aa3.05□□□□□ -1.92
RIF1-206ENST00000453091 KRTAP23-1A1A580 65 aa3.05□□□□□ -1.92
RIF1-206ENST00000453091 LPAP08519 4548 aa3.04□□□□□ -1.92
RIF1-206ENST00000453091 KMT2AQ03164 3969 aa3.04□□□□□ -1.92
RIF1-206ENST00000453091 HERC1Q15751 4861 aa3.03□□□□□ -1.92
RIF1-206ENST00000453091 FRAS1Q86XX4 4008 aa3.02□□□□□ -1.93
RIF1-206ENST00000453091 BIRC6Q9NR09 4857 aa3.02□□□□□ -1.93
RIF1-206ENST00000453091 KRTAP19-5Q3LI72 72 aa3.01□□□□□ -1.93
RIF1-206ENST00000453091 HERC2O95714 4834 aa3□□□□□ -1.93
RIF1-206ENST00000453091 EPPK1P58107 5090 aaKnown RBP2.96□□□□□ -1.93
RIF1-206ENST00000453091 KRTAP10-7P60409 375 aaPredicted RBP2.96□□□□□ -1.94
RIF1-206ENST00000453091 VPS13BQ7Z7G8 4022 aa2.95□□□□□ -1.94
RIF1-206ENST00000453091 LYSTQ99698 3801 aa2.95□□□□□ -1.94
RIF1-206ENST00000453091 SPRR2GQ9BYE4 73 aa2.95□□□□□ -1.94
RIF1-206ENST00000453091 DNAH6Q9C0G6 4158 aa2.94□□□□□ -1.94
RIF1-206ENST00000453091 CMYA5Q8N3K9 4069 aa2.94□□□□□ -1.94
RIF1-206ENST00000453091 ABCA13Q86UQ4 5058 aa2.94□□□□□ -1.94
RIF1-206ENST00000453091 HSPG2P98160 4391 aa2.93□□□□□ -1.94
RIF1-206ENST00000453091 KMT2CQ8NEZ4 4911 aaKnown RBP2.93□□□□□ -1.94
RIF1-206ENST00000453091 SPRR2FQ96RM1 72 aa2.91□□□□□ -1.94
RIF1-206ENST00000453091 LRP2P98164 4655 aa2.91□□□□□ -1.94
RIF1-206ENST00000453091 LCE3CQ5T5A8 94 aa2.89□□□□□ -1.95
RIF1-206ENST00000453091 KRTAP4-8A0A0G2JLE6 195 aa2.89□□□□□ -1.95
RIF1-206ENST00000453091 KRTAP4-8Q9BYQ9 185 aa2.89□□□□□ -1.95
RIF1-206ENST00000453091 KRTAP19-1Q8IUB9 90 aa2.87□□□□□ -1.95
RIF1-206ENST00000453091 DNAH7Q8WXX0 4024 aa2.85□□□□□ -1.95
RIF1-206ENST00000453091 MT1XP80297 61 aa2.82□□□□□ -1.96
RIF1-206ENST00000453091 MT1BP07438 61 aa2.81□□□□□ -1.96
RIF1-206ENST00000453091 PKD1P98161 4303 aa2.81□□□□□ -1.96
RIF1-206ENST00000453091 LCE2CQ5TA81 110 aa2.8□□□□□ -1.96
RIF1-206ENST00000453091 KRTAP4-7Q9BYR0 210 aa2.79□□□□□ -1.96
RIF1-206ENST00000453091 PCLOQ9Y6V0 5065 aa2.79□□□□□ -1.96
RIF1-206ENST00000453091 MT1GP13640 62 aa2.79□□□□□ -1.96
RIF1-206ENST00000453091 KRTAP9-8Q9BYQ0 159 aa2.78□□□□□ -1.96
RIF1-206ENST00000453091 LCE3BQ5TA77 95 aa2.76□□□□□ -1.97
RIF1-206ENST00000453091 KRTAP19-8Q3LI54 63 aa2.74□□□□□ -1.97
RIF1-206ENST00000453091 UBR4Q5T4S7 5183 aa2.73□□□□□ -1.97
RIF1-206ENST00000453091 PKHD1L1Q86WI1 4243 aa2.73□□□□□ -1.97
RIF1-206ENST00000453091 SPRR2EP22531 72 aa2.72□□□□□ -1.97
RIF1-206ENST00000453091 SPRR2BP35325 72 aa2.72□□□□□ -1.97
RIF1-206ENST00000453091 SPRR2AP35326 72 aa2.72□□□□□ -1.97
RIF1-206ENST00000453091 PKHD1P08F94 4074 aa2.72□□□□□ -1.97
RIF1-206ENST00000453091 KRTAP9-3Q9BYQ3 159 aa2.71□□□□□ -1.98
RIF1-206ENST00000453091 SPRR5A0A1B0GTR4 108 aa2.71□□□□□ -1.98
RIF1-206ENST00000453091 FAT4Q6V0I7 4981 aa2.69□□□□□ -1.98
RIF1-206ENST00000453091 FSIP2Q5CZC0 6907 aa2.69□□□□□ -1.98
RIF1-206ENST00000453091 KRTAP12-4P60329 112 aa2.68□□□□□ -1.98
RIF1-206ENST00000453091 HECTD4Q9Y4D8 3996 aa2.67□□□□□ -1.98
RIF1-206ENST00000453091 TNXBP22105 4242 aa2.67□□□□□ -1.98
RIF1-206ENST00000453091 RNF213Q63HN8 5207 aa2.67□□□□□ -1.98
RIF1-206ENST00000453091 LCE2BO14633 110 aa2.67□□□□□ -1.98
RIF1-206ENST00000453091 KRTAP19-2Q3LHN2 52 aa2.67□□□□□ -1.98
RIF1-206ENST00000453091 HMCN2Q8NDA2 5059 aa2.63□□□□□ -1.99
RIF1-206ENST00000453091 LOC100996750A0A140TA64 210 aa2.62□□□□□ -1.99
RIF1-206ENST00000453091 KRTAP4-3Q9BYR4 195 aa2.62□□□□□ -1.99
RIF1-206ENST00000453091 MUC17Q685J3 4493 aa2.61□□□□□ -1.99
RIF1-206ENST00000453091 SPRR2DP22532 72 aa2.59□□□□□ -1.99
RIF1-206ENST00000453091 MUC2Q02817 5179 aa2.53□□□□□ -2
RIF1-206ENST00000453091 MT1LQ93083 61 aa2.52□□□□□ -2.01
RIF1-206ENST00000453091 LCE3DQ9BYE3 92 aa2.5□□□□□ -2.01
RIF1-206ENST00000453091 MT1EP04732 61 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms