RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 HSPG2P98160 4391 aa0.54□□□□□ -2.32
VPS50-206ENST00000443443 NBEAL2Q6ZNJ1 2754 aa0.53□□□□□ -2.32
VPS50-206ENST00000443443 IGSF10Q6WRI0 2623 aa0.52□□□□□ -2.33
VPS50-206ENST00000443443 ZANQ9Y493 2812 aa0.52□□□□□ -2.33
VPS50-206ENST00000443443 FLGP20930 4061 aaPredicted RBP0.52□□□□□ -2.33
VPS50-206ENST00000443443 KRTAP19-5Q3LI72 72 aa0.52□□□□□ -2.33
VPS50-206ENST00000443443 CELSR3Q9NYQ7 3312 aa0.51□□□□□ -2.33
VPS50-206ENST00000443443 DYNC2H1Q8NCM8 4307 aaKnown RBP0.51□□□□□ -2.33
VPS50-206ENST00000443443 DNAH2Q9P225 4427 aa0.51□□□□□ -2.33
VPS50-206ENST00000443443 TRIOO75962 3097 aa0.51□□□□□ -2.33
VPS50-206ENST00000443443 NBEAQ8NFP9 2946 aa0.51□□□□□ -2.33
VPS50-206ENST00000443443 USP9YO00507 2555 aaPredicted RBP0.51□□□□□ -2.33
VPS50-206ENST00000443443 DEFB1P60022 68 aa0.5□□□□□ -2.33
VPS50-206ENST00000443443 KALRNO60229 2985 aa0.49□□□□□ -2.33
VPS50-206ENST00000443443 COL6A3P12111 3177 aa0.49□□□□□ -2.33
VPS50-206ENST00000443443 FASNP49327 2511 aaKnown RBP0.49□□□□□ -2.33
VPS50-206ENST00000443443 ITPR3Q14573 2671 aa0.49□□□□□ -2.33
VPS50-206ENST00000443443 NBPF19A0A087WUL8 3843 aa0.48□□□□□ -2.33
VPS50-206ENST00000443443 DEFB136Q30KP8 78 aa0.48□□□□□ -2.33
VPS50-206ENST00000443443 ZFHX4Q86UP3 3567 aa0.48□□□□□ -2.33
VPS50-206ENST00000443443 TGP01266 2768 aa0.48□□□□□ -2.33
VPS50-206ENST00000443443 DNAH9Q9NYC9 4486 aa0.46□□□□□ -2.34
VPS50-206ENST00000443443 TEP1Q99973 2627 aaKnown RBP0.46□□□□□ -2.34
VPS50-206ENST00000443443 HTTP42858 3142 aa0.46□□□□□ -2.34
VPS50-206ENST00000443443 SVEP1Q4LDE5 3571 aa0.46□□□□□ -2.34
VPS50-206ENST00000443443 DEFB124Q8NES8 71 aa0.46□□□□□ -2.34
VPS50-206ENST00000443443 HIVEP1P15822 2718 aa0.46□□□□□ -2.34
VPS50-206ENST00000443443 DNAH6Q9C0G6 4158 aa0.46□□□□□ -2.34
VPS50-206ENST00000443443 PKHD1P08F94 4074 aa0.46□□□□□ -2.34
VPS50-206ENST00000443443 DNAH7Q8WXX0 4024 aa0.45□□□□□ -2.34
VPS50-206ENST00000443443 LAMA5O15230 3695 aa0.45□□□□□ -2.34
VPS50-206ENST00000443443 MYO18BQ8IUG5 2567 aa0.45□□□□□ -2.34
VPS50-206ENST00000443443 TLN2Q9Y4G6 2542 aa0.44□□□□□ -2.34
VPS50-206ENST00000443443 PHGR1C9JFL3 82 aa0.44□□□□□ -2.34
VPS50-206ENST00000443443 HTN1P15515 57 aa0.44□□□□□ -2.34
VPS50-206ENST00000443443 AKAP9Q99996 3911 aa0.44□□□□□ -2.34
VPS50-206ENST00000443443 SPTBN5Q9NRC6 3674 aaKnown RBP0.43□□□□□ -2.34
VPS50-206ENST00000443443 LRP1BQ9NZR2 4599 aa0.43□□□□□ -2.34
VPS50-206ENST00000443443 DNAH8Q96JB1 4490 aa0.43□□□□□ -2.34
VPS50-206ENST00000443443 APOBP04114 4563 aaKnown RBP0.42□□□□□ -2.34
VPS50-206ENST00000443443 FAT4Q6V0I7 4981 aa0.42□□□□□ -2.34
VPS50-206ENST00000443443 MGAM2Q2M2H8 2515 aa0.42□□□□□ -2.34
VPS50-206ENST00000443443 FLNAP21333 2647 aaKnown RBP0.41□□□□□ -2.34
VPS50-206ENST00000443443 LAMA1P25391 3075 aa0.41□□□□□ -2.34
VPS50-206ENST00000443443 MXRA5Q9NR99 2828 aa0.4□□□□□ -2.35
VPS50-206ENST00000443443 APELAP0DMC3 54 aa0.4□□□□□ -2.35
VPS50-206ENST00000443443 DEFB133Q30KQ1 61 aa0.4□□□□□ -2.35
VPS50-206ENST00000443443 WDR87Q6ZQQ6 2873 aa0.39□□□□□ -2.35
VPS50-206ENST00000443443 MAST4O15021 2626 aa0.39□□□□□ -2.35
VPS50-206ENST00000443443 FAT3Q8TDW7 4589 aa0.39□□□□□ -2.35
VPS50-206ENST00000443443 HMCN2Q8NDA2 5059 aa0.39□□□□□ -2.35
VPS50-206ENST00000443443 USP9XQ93008 2570 aaPredicted RBP0.38□□□□□ -2.35
VPS50-206ENST00000443443 MDN1Q9NU22 5596 aa0.38□□□□□ -2.35
VPS50-206ENST00000443443 DNAH1Q9P2D7 4330 aa0.37□□□□□ -2.35
VPS50-206ENST00000443443 ITPR1Q14643 2758 aa0.36□□□□□ -2.35
VPS50-206ENST00000443443 KMT2DO14686 5537 aa0.36□□□□□ -2.35
VPS50-206ENST00000443443 MGAQ8IWI9 3026 aa0.35□□□□□ -2.35
VPS50-206ENST00000443443 CSMD1Q96PZ7 3565 aa0.35□□□□□ -2.35
VPS50-206ENST00000443443 FAT1Q14517 4588 aa0.35□□□□□ -2.35
VPS50-206ENST00000443443 MAP1AP78559 2803 aaPredicted RBP0.34□□□□□ -2.36
VPS50-206ENST00000443443 RELNP78509 3460 aa0.34□□□□□ -2.36
VPS50-206ENST00000443443 DMXL2Q8TDJ6 3036 aa0.33□□□□□ -2.36
VPS50-206ENST00000443443 CFAP54Q96N23 3096 aa0.33□□□□□ -2.36
VPS50-206ENST00000443443 MT1HP80294 61 aa0.33□□□□□ -2.36
VPS50-206ENST00000443443 LRP2P98164 4655 aa0.31□□□□□ -2.36
VPS50-206ENST00000443443 RPS29P62273 56 aaKnown RBP0.31□□□□□ -2.36
VPS50-206ENST00000443443 LAMA3Q16787 3333 aa0.31□□□□□ -2.36
VPS50-206ENST00000443443 NBEAL1Q6ZS30 2694 aa0.31□□□□□ -2.36
VPS50-206ENST00000443443 MT1EP04732 61 aa0.3□□□□□ -2.36
VPS50-206ENST00000443443 ADGRG4Q8IZF6 3080 aa0.3□□□□□ -2.36
VPS50-206ENST00000443443 CMYA5Q8N3K9 4069 aa0.29□□□□□ -2.36
VPS50-206ENST00000443443 CEP250Q9BV73 2442 aa0.29□□□□□ -2.36
VPS50-206ENST00000443443 DNAH10Q8IVF4 4471 aa0.29□□□□□ -2.36
VPS50-206ENST00000443443 STAB2Q8WWQ8 2551 aa0.28□□□□□ -2.36
VPS50-206ENST00000443443 SPRR2GQ9BYE4 73 aa0.28□□□□□ -2.36
VPS50-206ENST00000443443 CD52P31358 61 aa0.27□□□□□ -2.37
VPS50-206ENST00000443443 SPTAN1Q13813 2472 aaKnown RBP0.27□□□□□ -2.37
VPS50-206ENST00000443443 DSTQ03001 7570 aaKnown RBP0.26□□□□□ -2.37
VPS50-206ENST00000443443 NIPBLQ6KC79 2804 aaeCLIP0.25□□□□□ -2.37
VPS50-206ENST00000443443 MT1LQ93083 61 aa0.24□□□□□ -2.37
VPS50-206ENST00000443443 SSPOA2VEC9 5147 aa0.24□□□□□ -2.37
VPS50-206ENST00000443443 TEX15Q9BXT5 2789 aa0.23□□□□□ -2.37
VPS50-206ENST00000443443 NEBP20929 6669 aa0.23□□□□□ -2.37
VPS50-206ENST00000443443 PLECQ15149 4684 aaKnown RBP0.23□□□□□ -2.37
VPS50-206ENST00000443443 DEFB4AO15263 64 aa0.22□□□□□ -2.37
VPS50-206ENST00000443443 ATMQ13315 3056 aa0.22□□□□□ -2.37
VPS50-206ENST00000443443 DOPEY1Q5JWR5 2465 aa0.22□□□□□ -2.37
VPS50-206ENST00000443443 C5orf42Q9H799 3197 aa0.2□□□□□ -2.38
VPS50-206ENST00000443443 LRBAP50851 2863 aa0.19□□□□□ -2.38
VPS50-206ENST00000443443 A0A096LPF7 62 aa0.19□□□□□ -2.38
VPS50-206ENST00000443443 LINC01556Q5JQF7 62 aa0.19□□□□□ -2.38
VPS50-206ENST00000443443 FRYLO94915 3013 aa0.19□□□□□ -2.38
VPS50-206ENST00000443443 SMG1Q96Q15 3661 aaKnown RBP0.18□□□□□ -2.38
VPS50-206ENST00000443443 KRTAP19-7Q3SYF9 63 aa0.18□□□□□ -2.38
VPS50-206ENST00000443443 TRRAPQ9Y4A5 3859 aa0.18□□□□□ -2.38
VPS50-206ENST00000443443 MT1XP80297 61 aa0.17□□□□□ -2.38
VPS50-206ENST00000443443 HERC1Q15751 4861 aa0.16□□□□□ -2.38
VPS50-206ENST00000443443 PRUNE2Q8WUY3 3088 aa0.16□□□□□ -2.38
VPS50-206ENST00000443443 Q9Y3F1 56 aa0.15□□□□□ -2.39
VPS50-206ENST00000443443 KRTAP19-8Q3LI54 63 aa0.13□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms