RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 J3QR89 54 aa0.07□□□□□ -2.4
VPS41-207ENST00000439468 UBE2G1P62253 170 aa0.07□□□□□ -2.4
VPS41-207ENST00000439468 RPL39P62891 51 aaKnown RBP0.07□□□□□ -2.4
VPS41-207ENST00000439468 UBE2L3P68036 154 aaKnown RBP0.07□□□□□ -2.4
VPS41-207ENST00000439468 S100A7L2Q5SY68 101 aa0.07□□□□□ -2.4
VPS41-207ENST00000439468 ANP32BQ92688 251 aaKnown RBP0.07□□□□□ -2.4
VPS41-207ENST00000439468 IGLV5-48A0A075B6I7 105 aa0.06□□□□□ -2.4
VPS41-207ENST00000439468 A0A087WVE0 104 aa0.06□□□□□ -2.4
VPS41-207ENST00000439468 POLR2KP53803 58 aaKnown RBP0.06□□□□□ -2.4
VPS41-207ENST00000439468 PSMG3Q9BT73 122 aaPredicted RBP0.06□□□□□ -2.4
VPS41-207ENST00000439468 CACFD1Q9UGQ2 172 aa0.06□□□□□ -2.4
VPS41-207ENST00000439468 LOC100130705A0A1B0GUX0 176 aa0.05□□□□□ -2.4
VPS41-207ENST00000439468 K7EQZ3 153 aa0.05□□□□□ -2.4
VPS41-207ENST00000439468 M0QZ58 72 aa0.05□□□□□ -2.4
VPS41-207ENST00000439468 Q5BKY6 102 aa0.05□□□□□ -2.4
VPS41-207ENST00000439468 UBE2L5PA0A1B0GUS4 154 aa0.04□□□□□ -2.4
VPS41-207ENST00000439468 EFCAB10A6NFE3 127 aa0.04□□□□□ -2.4
VPS41-207ENST00000439468 GNGT2O14610 69 aa0.04□□□□□ -2.4
VPS41-207ENST00000439468 GNG11P61952 73 aa0.04□□□□□ -2.4
VPS41-207ENST00000439468 RPL7L1Q6DKI1 246 aaKnown RBP0.04□□□□□ -2.4
VPS41-207ENST00000439468 PSENENQ9NZ42 101 aa0.04□□□□□ -2.4
VPS41-207ENST00000439468 CDKN2A-AS1Q9UH64 79 aa0.04□□□□□ -2.4
VPS41-207ENST00000439468 SSSCA1O60232 199 aa0.03□□□□□ -2.4
VPS41-207ENST00000439468 SPTSSBQ8NFR3 76 aa0.03□□□□□ -2.4
VPS41-207ENST00000439468 DEFB105AQ8NG35 78 aa0.03□□□□□ -2.4
VPS41-207ENST00000439468 A0A087WXM4 84 aa0.02□□□□□ -2.41
VPS41-207ENST00000439468 TRAV1-2A0A0B4J238 106 aa0.02□□□□□ -2.41
VPS41-207ENST00000439468 SIX6O95475 246 aa0.02□□□□□ -2.41
VPS41-207ENST00000439468 COX17Q14061 63 aa0.02□□□□□ -2.41
VPS41-207ENST00000439468 CNFNQ9BYD5 112 aa0.02□□□□□ -2.41
VPS41-207ENST00000439468 FAM107BQ9H098 131 aa0.02□□□□□ -2.41
VPS41-207ENST00000439468 TMEM191AQ9H0A3 160 aa0.02□□□□□ -2.41
VPS41-207ENST00000439468 ST20Q9HBF5 79 aa0.02□□□□□ -2.41
VPS41-207ENST00000439468 PDCD5O14737 125 aa0.01□□□□□ -2.41
VPS41-207ENST00000439468 C3orf79P0CE67 100 aa0.01□□□□□ -2.41
VPS41-207ENST00000439468 FCER1GP30273 86 aa0.01□□□□□ -2.41
VPS41-207ENST00000439468 DEFB107AQ8IZN7 70 aa0.01□□□□□ -2.41
VPS41-207ENST00000439468 SCP2D1Q9UJQ7 156 aa0.01□□□□□ -2.41
VPS41-207ENST00000439468 SPINK8P0C7L1 97 aa0□□□□□ -2.41
VPS41-207ENST00000439468 GCHFRP30047 84 aa0□□□□□ -2.41
VPS41-207ENST00000439468 FAM213BQ8TBF2 198 aa0□□□□□ -2.41
VPS41-207ENST00000439468 LINC01546A6NGU7 62 aa-0.01□□□□□ -2.41
VPS41-207ENST00000439468 SNCGO76070 127 aa-0.01□□□□□ -2.41
VPS41-207ENST00000439468 Q6JHZ5 121 aa-0.01□□□□□ -2.41
VPS41-207ENST00000439468 SMIM2Q9BVW6 85 aa-0.01□□□□□ -2.41
VPS41-207ENST00000439468 IFI27P40305 119 aaPredicted RBP-0.02□□□□□ -2.41
VPS41-207ENST00000439468 S100A12P80511 92 aa-0.02□□□□□ -2.41
VPS41-207ENST00000439468 WHAMMP3Q1A5X7 153 aa-0.02□□□□□ -2.41
VPS41-207ENST00000439468 C9orf62Q8N4C0 152 aa-0.02□□□□□ -2.41
VPS41-207ENST00000439468 KCNRGQ8N5I3 272 aa-0.02□□□□□ -2.41
VPS41-207ENST00000439468 C2orf88Q9BSF0 95 aa-0.02□□□□□ -2.41
VPS41-207ENST00000439468 IGIPA6NJ69 53 aa-0.03□□□□□ -2.41
VPS41-207ENST00000439468 ZNF815PA8K554 130 aa-0.03□□□□□ -2.41
VPS41-207ENST00000439468 H3BUT2 72 aa-0.03□□□□□ -2.41
VPS41-207ENST00000439468 NDUFB6O95139 128 aa-0.03□□□□□ -2.41
VPS41-207ENST00000439468 SFT2D2O95562 160 aa-0.03□□□□□ -2.41
VPS41-207ENST00000439468 SMIM13P0DJ93 91 aa-0.03□□□□□ -2.41
VPS41-207ENST00000439468 LINC00158P58513 81 aa-0.03□□□□□ -2.41
VPS41-207ENST00000439468 S100A16Q96FQ6 103 aaKnown RBP-0.03□□□□□ -2.41
VPS41-207ENST00000439468 SEC11CQ9BY50 192 aa-0.03□□□□□ -2.41
VPS41-207ENST00000439468 COX7BP24311 80 aa-0.04□□□□□ -2.42
VPS41-207ENST00000439468 SEC11AP67812 179 aa-0.04□□□□□ -2.42
VPS41-207ENST00000439468 NXT2Q9NPJ8 142 aaKnown RBP-0.04□□□□□ -2.42
VPS41-207ENST00000439468 TRAV13-2A0A0B4J235 113 aa-0.05□□□□□ -2.42
VPS41-207ENST00000439468 MT-ATP8P03928 68 aa-0.05□□□□□ -2.42
VPS41-207ENST00000439468 BAGE2Q86Y30 109 aa-0.05□□□□□ -2.42
VPS41-207ENST00000439468 TMEM167BQ9NRX6 74 aa-0.05□□□□□ -2.42
VPS41-207ENST00000439468 PIGBOS1A0A0B4J2F0 54 aa-0.06□□□□□ -2.42
VPS41-207ENST00000439468 HCG22E2RYF7 251 aa-0.06□□□□□ -2.42
VPS41-207ENST00000439468 K7EP34 96 aa-0.06□□□□□ -2.42
VPS41-207ENST00000439468 PPP1R17O96001 155 aa-0.06□□□□□ -2.42
VPS41-207ENST00000439468 C20orf78Q9BR46 151 aa-0.06□□□□□ -2.42
VPS41-207ENST00000439468 AKAIN1P0CW23 69 aa-0.07□□□□□ -2.42
VPS41-207ENST00000439468 NDUFC1O43677 76 aa-0.08□□□□□ -2.42
VPS41-207ENST00000439468 IGLC3P0DOY3 106 aa-0.08□□□□□ -2.42
VPS41-207ENST00000439468 MEIG1Q5JSS6 88 aa-0.08□□□□□ -2.42
VPS41-207ENST00000439468 SFTA2Q6UW10 78 aa-0.08□□□□□ -2.42
VPS41-207ENST00000439468 SMIM4Q8WVI0 70 aa-0.08□□□□□ -2.42
VPS41-207ENST00000439468 TCEAL7Q9BRU2 100 aa-0.08□□□□□ -2.42
VPS41-207ENST00000439468 MMP24-AS1A0A0U1RRL7 71 aa-0.09□□□□□ -2.42
VPS41-207ENST00000439468 BAGE3Q86Y29 109 aa-0.09□□□□□ -2.42
VPS41-207ENST00000439468 MRPL34Q9BQ48 92 aaKnown RBP-0.09□□□□□ -2.42
VPS41-207ENST00000439468 TRBV7-4A0A0J9YYF1 115 aa-0.1□□□□□ -2.43
VPS41-207ENST00000439468 CTXND1A0A1B0GTU2 59 aa-0.1□□□□□ -2.43
VPS41-207ENST00000439468 A0A1B0GUT8 65 aa-0.1□□□□□ -2.43
VPS41-207ENST00000439468 SMIM31A0A1B0GVY4 71 aa-0.1□□□□□ -2.43
VPS41-207ENST00000439468 IFITM1P13164 125 aa-0.1□□□□□ -2.43
VPS41-207ENST00000439468 C8orf59Q8N0T1 100 aaPredicted RBP-0.1□□□□□ -2.43
VPS41-207ENST00000439468 TNP1P09430 55 aa-0.11□□□□□ -2.43
VPS41-207ENST00000439468 MUSTN1Q8IVN3 82 aa-0.11□□□□□ -2.43
VPS41-207ENST00000439468 SPANXDQ9BXN6 97 aa-0.11□□□□□ -2.43
VPS41-207ENST00000439468 FAM25AB3EWG3 89 aa-0.12□□□□□ -2.43
VPS41-207ENST00000439468 FAM25CB3EWG5 89 aa-0.12□□□□□ -2.43
VPS41-207ENST00000439468 FAM25GB3EWG6 89 aa-0.12□□□□□ -2.43
VPS41-207ENST00000439468 SMIM6P0DI80 62 aa-0.12□□□□□ -2.43
VPS41-207ENST00000439468 MRPS10P82664 201 aaKnown RBP-0.12□□□□□ -2.43
VPS41-207ENST00000439468 Q8N8P6 123 aa-0.12□□□□□ -2.43
VPS41-207ENST00000439468 hADV29S1A0JD25 119 aa-0.13□□□□□ -2.43
VPS41-207ENST00000439468 GNG4P50150 75 aa-0.13□□□□□ -2.43
VPS41-207ENST00000439468 SERF2P84101 59 aa-0.13□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms