RNA–Protein interactions for RNA: ENST00000428599.6

CTNND1-208, Transcript of catenin delta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNND1, Length 6,016 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-208ENST00000428599 KRTAP3-3Q9BYR6 98 aa3.92□□□□□ -1.78
CTNND1-208ENST00000428599 DNAH5Q8TE73 4624 aa3.9□□□□□ -1.79
CTNND1-208ENST00000428599 DNAH1Q9P2D7 4330 aa3.89□□□□□ -1.79
CTNND1-208ENST00000428599 KRTAP3-2Q9BYR7 98 aa3.88□□□□□ -1.79
CTNND1-208ENST00000428599 PLECQ15149 4684 aaKnown RBP3.87□□□□□ -1.79
CTNND1-208ENST00000428599 DNHD1Q96M86 4753 aa3.86□□□□□ -1.79
CTNND1-208ENST00000428599 KRTAP8-1Q8IUC2 63 aa3.86□□□□□ -1.79
CTNND1-208ENST00000428599 KRTAP23-1A1A580 65 aa3.84□□□□□ -1.79
CTNND1-208ENST00000428599 LCE3AQ5TA76 89 aa3.83□□□□□ -1.8
CTNND1-208ENST00000428599 KRTAP10-5P60370 271 aa3.82□□□□□ -1.8
CTNND1-208ENST00000428599 VPS13DQ5THJ4 4388 aa3.8□□□□□ -1.8
CTNND1-208ENST00000428599 DNAH11Q96DT5 4516 aa3.8□□□□□ -1.8
CTNND1-208ENST00000428599 DNAH10Q8IVF4 4471 aa3.76□□□□□ -1.81
CTNND1-208ENST00000428599 LORP23490 312 aaPredicted RBP3.76□□□□□ -1.81
CTNND1-208ENST00000428599 DNAH17Q9UFH2 4485 aa3.76□□□□□ -1.81
CTNND1-208ENST00000428599 STARD9Q9P2P6 4700 aa3.75□□□□□ -1.81
CTNND1-208ENST00000428599 DYNC1H1Q14204 4646 aaKnown RBP3.73□□□□□ -1.81
CTNND1-208ENST00000428599 LRP1BQ9NZR2 4599 aa3.72□□□□□ -1.81
CTNND1-208ENST00000428599 KRTAP4-1Q9BYQ7 146 aa3.72□□□□□ -1.81
CTNND1-208ENST00000428599 PRKDCP78527 4128 aaKnown RBP3.72□□□□□ -1.81
CTNND1-208ENST00000428599 ANK2Q01484 3957 aa3.71□□□□□ -1.81
CTNND1-208ENST00000428599 DNAH3Q8TD57 4116 aa3.7□□□□□ -1.82
CTNND1-208ENST00000428599 FAT2Q9NYQ8 4349 aa3.7□□□□□ -1.82
CTNND1-208ENST00000428599 DNAH2Q9P225 4427 aa3.69□□□□□ -1.82
CTNND1-208ENST00000428599 MT1HP80294 61 aa3.67□□□□□ -1.82
CTNND1-208ENST00000428599 DYNC2H1Q8NCM8 4307 aaKnown RBP3.67□□□□□ -1.82
CTNND1-208ENST00000428599 FAT1Q14517 4588 aa3.67□□□□□ -1.82
CTNND1-208ENST00000428599 KMT2AQ03164 3969 aa3.64□□□□□ -1.83
CTNND1-208ENST00000428599 RYR1P21817 5038 aa3.63□□□□□ -1.83
CTNND1-208ENST00000428599 KRTAP10-7P60409 375 aaPredicted RBP3.61□□□□□ -1.83
CTNND1-208ENST00000428599 SACSQ9NZJ4 4579 aa3.6□□□□□ -1.83
CTNND1-208ENST00000428599 CMYA5Q8N3K9 4069 aa3.58□□□□□ -1.84
CTNND1-208ENST00000428599 MT2AP02795 61 aa3.58□□□□□ -1.84
CTNND1-208ENST00000428599 VPS13BQ7Z7G8 4022 aa3.56□□□□□ -1.84
CTNND1-208ENST00000428599 SPRR2FQ96RM1 72 aa3.56□□□□□ -1.84
CTNND1-208ENST00000428599 DNAH8Q96JB1 4490 aa3.55□□□□□ -1.84
CTNND1-208ENST00000428599 DNAH6Q9C0G6 4158 aa3.53□□□□□ -1.84
CTNND1-208ENST00000428599 LYSTQ99698 3801 aa3.53□□□□□ -1.84
CTNND1-208ENST00000428599 KRTAP17-1Q9BYP8 105 aa3.52□□□□□ -1.85
CTNND1-208ENST00000428599 MT1FP04733 61 aa3.51□□□□□ -1.85
CTNND1-208ENST00000428599 SPRR2GQ9BYE4 73 aa3.5□□□□□ -1.85
CTNND1-208ENST00000428599 APOBP04114 4563 aaKnown RBP3.49□□□□□ -1.85
CTNND1-208ENST00000428599 RYR3Q15413 4870 aa3.49□□□□□ -1.85
CTNND1-208ENST00000428599 DNAH7Q8WXX0 4024 aa3.48□□□□□ -1.85
CTNND1-208ENST00000428599 KIAA1109Q2LD37 5005 aa3.44□□□□□ -1.86
CTNND1-208ENST00000428599 FRAS1Q86XX4 4008 aa3.43□□□□□ -1.86
CTNND1-208ENST00000428599 KRTAP19-5Q3LI72 72 aa3.42□□□□□ -1.86
CTNND1-208ENST00000428599 KRTAP19-4Q3LI73 84 aa3.4□□□□□ -1.87
CTNND1-208ENST00000428599 HECTD4Q9Y4D8 3996 aa3.4□□□□□ -1.87
CTNND1-208ENST00000428599 FAT3Q8TDW7 4589 aa3.39□□□□□ -1.87
CTNND1-208ENST00000428599 SPRR2EP22531 72 aa3.39□□□□□ -1.87
CTNND1-208ENST00000428599 SPRR2BP35325 72 aa3.39□□□□□ -1.87
CTNND1-208ENST00000428599 SPRR2AP35326 72 aa3.39□□□□□ -1.87
CTNND1-208ENST00000428599 LCE3CQ5T5A8 94 aa3.39□□□□□ -1.87
CTNND1-208ENST00000428599 RYR2Q92736 4967 aa3.38□□□□□ -1.87
CTNND1-208ENST00000428599 LRP1Q07954 4544 aaKnown RBP3.37□□□□□ -1.87
CTNND1-208ENST00000428599 MYCBP2O75592 4640 aa3.37□□□□□ -1.87
CTNND1-208ENST00000428599 HSPG2P98160 4391 aa3.33□□□□□ -1.88
CTNND1-208ENST00000428599 HYDINQ4G0P3 5121 aa3.32□□□□□ -1.88
CTNND1-208ENST00000428599 BIRC6Q9NR09 4857 aa3.31□□□□□ -1.88
CTNND1-208ENST00000428599 SPRR2DP22532 72 aa3.3□□□□□ -1.88
CTNND1-208ENST00000428599 HERC2O95714 4834 aa3.3□□□□□ -1.88
CTNND1-208ENST00000428599 KRTAP19-1Q8IUB9 90 aa3.28□□□□□ -1.88
CTNND1-208ENST00000428599 KRTAP19-8Q3LI54 63 aa3.27□□□□□ -1.89
CTNND1-208ENST00000428599 PKHD1P08F94 4074 aa3.26□□□□□ -1.89
CTNND1-208ENST00000428599 KRTAP12-4P60329 112 aa3.25□□□□□ -1.89
CTNND1-208ENST00000428599 LCE2DQ5TA82 110 aaPredicted RBP3.25□□□□□ -1.89
CTNND1-208ENST00000428599 LCE2BO14633 110 aa3.24□□□□□ -1.89
CTNND1-208ENST00000428599 KRTAP9-8Q9BYQ0 159 aa3.23□□□□□ -1.89
CTNND1-208ENST00000428599 LCE3BQ5TA77 95 aa3.23□□□□□ -1.89
CTNND1-208ENST00000428599 PKHD1L1Q86WI1 4243 aa3.22□□□□□ -1.89
CTNND1-208ENST00000428599 LCE2CQ5TA81 110 aa3.21□□□□□ -1.9
CTNND1-208ENST00000428599 PKD1P98161 4303 aa3.19□□□□□ -1.9
CTNND1-208ENST00000428599 LRP2P98164 4655 aa3.19□□□□□ -1.9
CTNND1-208ENST00000428599 MT1BP07438 61 aa3.19□□□□□ -1.9
CTNND1-208ENST00000428599 MT1XP80297 61 aa3.19□□□□□ -1.9
CTNND1-208ENST00000428599 HERC1Q15751 4861 aa3.17□□□□□ -1.9
CTNND1-208ENST00000428599 LPAP08519 4548 aa3.17□□□□□ -1.9
CTNND1-208ENST00000428599 PCLOQ9Y6V0 5065 aa3.16□□□□□ -1.9
CTNND1-208ENST00000428599 KRTAP9-3Q9BYQ3 159 aa3.16□□□□□ -1.9
CTNND1-208ENST00000428599 MT1GP13640 62 aa3.14□□□□□ -1.91
CTNND1-208ENST00000428599 KMT2CQ8NEZ4 4911 aaKnown RBP3.11□□□□□ -1.91
CTNND1-208ENST00000428599 TNXBP22105 4242 aa3.11□□□□□ -1.91
CTNND1-208ENST00000428599 KRTAP4-8A0A0G2JLE6 195 aa3.09□□□□□ -1.92
CTNND1-208ENST00000428599 KRTAP4-8Q9BYQ9 185 aa3.09□□□□□ -1.92
CTNND1-208ENST00000428599 KRTAP19-2Q3LHN2 52 aa3.06□□□□□ -1.92
CTNND1-208ENST00000428599 LCE3DQ9BYE3 92 aa3.06□□□□□ -1.92
CTNND1-208ENST00000428599 EPPK1P58107 5090 aaKnown RBP3.02□□□□□ -1.93
CTNND1-208ENST00000428599 LCE3EQ5T5B0 92 aa3.01□□□□□ -1.93
CTNND1-208ENST00000428599 SPRR5A0A1B0GTR4 108 aa3□□□□□ -1.93
CTNND1-208ENST00000428599 FLGP20930 4061 aaPredicted RBP2.98□□□□□ -1.93
CTNND1-208ENST00000428599 ABCA13Q86UQ4 5058 aa2.97□□□□□ -1.93
CTNND1-208ENST00000428599 KRTAP9-2Q9BYQ4 174 aa2.95□□□□□ -1.94
CTNND1-208ENST00000428599 KRTAP19-3Q7Z4W3 81 aa2.93□□□□□ -1.94
CTNND1-208ENST00000428599 MUC17Q685J3 4493 aa2.93□□□□□ -1.94
CTNND1-208ENST00000428599 KRTAP19-6Q3LI70 58 aa2.89□□□□□ -1.95
CTNND1-208ENST00000428599 MT4P47944 62 aa2.89□□□□□ -1.95
CTNND1-208ENST00000428599 LCE2AQ5TA79 106 aaPredicted RBP2.88□□□□□ -1.95
CTNND1-208ENST00000428599 MT3P25713 68 aa2.87□□□□□ -1.95
CTNND1-208ENST00000428599 MT1EP04732 61 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms