RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 KRTAP10-4P60372 401 aaPredicted RBP5.12□□□□□ -1.59
UBR4-205ENST00000417040 ALMS1Q8TCU4 4167 aa5.1□□□□□ -1.59
UBR4-205ENST00000417040 COL7A1Q02388 2944 aa5.07□□□□□ -1.6
UBR4-205ENST00000417040 KRTAP10-5P60370 271 aa5.04□□□□□ -1.6
UBR4-205ENST00000417040 ZNF469Q96JG9 3925 aaPredicted RBP5.01□□□□□ -1.61
UBR4-205ENST00000417040 DNAH10Q8IVF4 4471 aa5.01□□□□□ -1.61
UBR4-205ENST00000417040 DNAH1Q9P2D7 4330 aa5.01□□□□□ -1.61
UBR4-205ENST00000417040 KRTAP23-1A1A580 65 aa4.98□□□□□ -1.61
UBR4-205ENST00000417040 DNAH9Q9NYC9 4486 aa4.97□□□□□ -1.61
UBR4-205ENST00000417040 DNAH2Q9P225 4427 aa4.92□□□□□ -1.62
UBR4-205ENST00000417040 DNAH8Q96JB1 4490 aa4.87□□□□□ -1.63
UBR4-205ENST00000417040 DNAH3Q8TD57 4116 aa4.86□□□□□ -1.63
UBR4-205ENST00000417040 KRTAP4-1Q9BYQ7 146 aa4.84□□□□□ -1.63
UBR4-205ENST00000417040 FRAS1Q86XX4 4008 aa4.84□□□□□ -1.64
UBR4-205ENST00000417040 ANK2Q01484 3957 aa4.82□□□□□ -1.64
UBR4-205ENST00000417040 PLECQ15149 4684 aaKnown RBP4.82□□□□□ -1.64
UBR4-205ENST00000417040 KRTAP8-1Q8IUC2 63 aa4.8□□□□□ -1.64
UBR4-205ENST00000417040 DNAH5Q8TE73 4624 aa4.78□□□□□ -1.64
UBR4-205ENST00000417040 DNAH11Q96DT5 4516 aa4.76□□□□□ -1.65
UBR4-205ENST00000417040 DNAH17Q9UFH2 4485 aa4.75□□□□□ -1.65
UBR4-205ENST00000417040 MT1HP80294 61 aa4.68□□□□□ -1.66
UBR4-205ENST00000417040 VPS13DQ5THJ4 4388 aa4.68□□□□□ -1.66
UBR4-205ENST00000417040 KRTAP19-5Q3LI72 72 aa4.67□□□□□ -1.66
UBR4-205ENST00000417040 KMT2AQ03164 3969 aa4.64□□□□□ -1.67
UBR4-205ENST00000417040 STARD9Q9P2P6 4700 aa4.63□□□□□ -1.67
UBR4-205ENST00000417040 VPS13BQ7Z7G8 4022 aa4.61□□□□□ -1.67
UBR4-205ENST00000417040 FAT2Q9NYQ8 4349 aa4.61□□□□□ -1.67
UBR4-205ENST00000417040 MT2AP02795 61 aa4.6□□□□□ -1.67
UBR4-205ENST00000417040 LCE3CQ5T5A8 94 aa4.59□□□□□ -1.68
UBR4-205ENST00000417040 LRP1BQ9NZR2 4599 aa4.58□□□□□ -1.68
UBR4-205ENST00000417040 CMYA5Q8N3K9 4069 aa4.57□□□□□ -1.68
UBR4-205ENST00000417040 DYNC2H1Q8NCM8 4307 aaKnown RBP4.57□□□□□ -1.68
UBR4-205ENST00000417040 SPRR2GQ9BYE4 73 aa4.57□□□□□ -1.68
UBR4-205ENST00000417040 SACSQ9NZJ4 4579 aa4.56□□□□□ -1.68
UBR4-205ENST00000417040 MT1FP04733 61 aa4.56□□□□□ -1.68
UBR4-205ENST00000417040 LYSTQ99698 3801 aa4.53□□□□□ -1.68
UBR4-205ENST00000417040 PRKDCP78527 4128 aaKnown RBP4.53□□□□□ -1.68
UBR4-205ENST00000417040 FAT1Q14517 4588 aa4.53□□□□□ -1.68
UBR4-205ENST00000417040 DNAH7Q8WXX0 4024 aa4.49□□□□□ -1.69
UBR4-205ENST00000417040 DNAH6Q9C0G6 4158 aa4.49□□□□□ -1.69
UBR4-205ENST00000417040 DYNC1H1Q14204 4646 aaKnown RBP4.48□□□□□ -1.69
UBR4-205ENST00000417040 KRTAP10-7P60409 375 aaPredicted RBP4.46□□□□□ -1.7
UBR4-205ENST00000417040 SPRR2FQ96RM1 72 aa4.46□□□□□ -1.7
UBR4-205ENST00000417040 APOBP04114 4563 aaKnown RBP4.44□□□□□ -1.7
UBR4-205ENST00000417040 HECTD4Q9Y4D8 3996 aa4.39□□□□□ -1.71
UBR4-205ENST00000417040 LCE3BQ5TA77 95 aa4.37□□□□□ -1.71
UBR4-205ENST00000417040 MT1GP13640 62 aa4.29□□□□□ -1.72
UBR4-205ENST00000417040 KRTAP12-4P60329 112 aa4.27□□□□□ -1.73
UBR4-205ENST00000417040 KRTAP17-1Q9BYP8 105 aa4.26□□□□□ -1.73
UBR4-205ENST00000417040 KRTAP19-1Q8IUB9 90 aa4.25□□□□□ -1.73
UBR4-205ENST00000417040 MT1XP80297 61 aa4.24□□□□□ -1.73
UBR4-205ENST00000417040 RYR1P21817 5038 aa4.23□□□□□ -1.73
UBR4-205ENST00000417040 FAT3Q8TDW7 4589 aa4.22□□□□□ -1.73
UBR4-205ENST00000417040 KRTAP4-8A0A0G2JLE6 195 aa4.21□□□□□ -1.74
UBR4-205ENST00000417040 KRTAP4-8Q9BYQ9 185 aa4.21□□□□□ -1.74
UBR4-205ENST00000417040 MYCBP2O75592 4640 aa4.2□□□□□ -1.74
UBR4-205ENST00000417040 DNHD1Q96M86 4753 aa4.18□□□□□ -1.74
UBR4-205ENST00000417040 LPAP08519 4548 aa4.16□□□□□ -1.74
UBR4-205ENST00000417040 SPRR2EP22531 72 aa4.15□□□□□ -1.74
UBR4-205ENST00000417040 SPRR2BP35325 72 aa4.15□□□□□ -1.74
UBR4-205ENST00000417040 SPRR2AP35326 72 aa4.15□□□□□ -1.74
UBR4-205ENST00000417040 KRTAP19-8Q3LI54 63 aa4.15□□□□□ -1.75
UBR4-205ENST00000417040 LRP1Q07954 4544 aaKnown RBP4.13□□□□□ -1.75
UBR4-205ENST00000417040 SPRR5A0A1B0GTR4 108 aa4.13□□□□□ -1.75
UBR4-205ENST00000417040 MT1BP07438 61 aa4.12□□□□□ -1.75
UBR4-205ENST00000417040 PKD1P98161 4303 aa4.11□□□□□ -1.75
UBR4-205ENST00000417040 KRTAP4-7Q9BYR0 210 aa4.09□□□□□ -1.75
UBR4-205ENST00000417040 RYR3Q15413 4870 aa4.05□□□□□ -1.76
UBR4-205ENST00000417040 KRTAP9-8Q9BYQ0 159 aa4.03□□□□□ -1.76
UBR4-205ENST00000417040 HSPG2P98160 4391 aa4.02□□□□□ -1.77
UBR4-205ENST00000417040 LCE3DQ9BYE3 92 aa4.02□□□□□ -1.77
UBR4-205ENST00000417040 KRTAP19-4Q3LI73 84 aa4□□□□□ -1.77
UBR4-205ENST00000417040 SPRR2DP22532 72 aa3.99□□□□□ -1.77
UBR4-205ENST00000417040 TNXBP22105 4242 aa3.97□□□□□ -1.77
UBR4-205ENST00000417040 LCE2BO14633 110 aa3.96□□□□□ -1.78
UBR4-205ENST00000417040 HYDINQ4G0P3 5121 aa3.96□□□□□ -1.78
UBR4-205ENST00000417040 PKHD1L1Q86WI1 4243 aa3.95□□□□□ -1.78
UBR4-205ENST00000417040 PKHD1P08F94 4074 aa3.95□□□□□ -1.78
UBR4-205ENST00000417040 LCE3EQ5T5B0 92 aa3.93□□□□□ -1.78
UBR4-205ENST00000417040 KRTAP9-3Q9BYQ3 159 aa3.93□□□□□ -1.78
UBR4-205ENST00000417040 LCE2CQ5TA81 110 aa3.91□□□□□ -1.78
UBR4-205ENST00000417040 LRP2P98164 4655 aa3.89□□□□□ -1.79
UBR4-205ENST00000417040 LOC100996750A0A140TA64 210 aa3.89□□□□□ -1.79
UBR4-205ENST00000417040 PRM1P04553 51 aa3.85□□□□□ -1.79
UBR4-205ENST00000417040 MT1LQ93083 61 aa3.84□□□□□ -1.79
UBR4-205ENST00000417040 KRTAP4-3Q9BYR4 195 aa3.8□□□□□ -1.8
UBR4-205ENST00000417040 KRTAP19-3Q7Z4W3 81 aa3.79□□□□□ -1.8
UBR4-205ENST00000417040 RYR2Q92736 4967 aa3.78□□□□□ -1.8
UBR4-205ENST00000417040 FLGP20930 4061 aaPredicted RBP3.78□□□□□ -1.81
UBR4-205ENST00000417040 MT1EP04732 61 aa3.77□□□□□ -1.81
UBR4-205ENST00000417040 KMT2CQ8NEZ4 4911 aaKnown RBP3.71□□□□□ -1.81
UBR4-205ENST00000417040 HERC1Q15751 4861 aa3.7□□□□□ -1.82
UBR4-205ENST00000417040 MUC17Q685J3 4493 aa3.68□□□□□ -1.82
UBR4-205ENST00000417040 KRTAP19-2Q3LHN2 52 aa3.68□□□□□ -1.82
UBR4-205ENST00000417040 KRTAP4-9Q9BYQ8 210 aa3.68□□□□□ -1.82
UBR4-205ENST00000417040 HERC2O95714 4834 aa3.68□□□□□ -1.82
UBR4-205ENST00000417040 KIAA1109Q2LD37 5005 aa3.67□□□□□ -1.82
UBR4-205ENST00000417040 MT1MQ8N339 61 aa3.66□□□□□ -1.82
UBR4-205ENST00000417040 MT4P47944 62 aa3.65□□□□□ -1.82
UBR4-205ENST00000417040 LCE2DQ5TA82 110 aaPredicted RBP3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 205 ms