RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 A0A1B0GU69 56 aa3.29□□□□□ -1.88
CLK1-202ENST00000409403 FAM168BA1KXE4 195 aa3.28□□□□□ -1.88
CLK1-202ENST00000409403 MIR22HGQ0VDD5 57 aa3.28□□□□□ -1.88
CLK1-202ENST00000409403 SPRR1BP22528 89 aa3.27□□□□□ -1.89
CLK1-202ENST00000409403 HTN3P15516 51 aa3.27□□□□□ -1.89
CLK1-202ENST00000409403 LINC01556Q5JQF7 62 aa3.27□□□□□ -1.89
CLK1-202ENST00000409403 C8orf17Q9NRJ1 99 aa3.27□□□□□ -1.89
CLK1-202ENST00000409403 LCE1EQ5T753 118 aa3.26□□□□□ -1.89
CLK1-202ENST00000409403 CSAG1Q6PB30 78 aa3.26□□□□□ -1.89
CLK1-202ENST00000409403 ADM2Q7Z4H4 148 aa3.26□□□□□ -1.89
CLK1-202ENST00000409403 FAT1Q14517 4588 aa3.25□□□□□ -1.89
CLK1-202ENST00000409403 ZNF706Q9Y5V0 76 aaPredicted RBP3.25□□□□□ -1.89
CLK1-202ENST00000409403 LRP1BQ9NZR2 4599 aa3.25□□□□□ -1.89
CLK1-202ENST00000409403 FSIP2Q5CZC0 6907 aa3.25□□□□□ -1.89
CLK1-202ENST00000409403 DEFB135Q30KP9 77 aa3.24□□□□□ -1.89
CLK1-202ENST00000409403 MRPL34Q9BQ48 92 aaKnown RBP3.24□□□□□ -1.89
CLK1-202ENST00000409403 DMAC1Q96GE9 116 aa3.24□□□□□ -1.89
CLK1-202ENST00000409403 LRP2P98164 4655 aa3.23□□□□□ -1.89
CLK1-202ENST00000409403 VPS13BQ7Z7G8 4022 aa3.23□□□□□ -1.89
CLK1-202ENST00000409403 IGHV6-1A0A0B4J1U7 121 aa3.23□□□□□ -1.89
CLK1-202ENST00000409403 A0A1B0GVX0 72 aa3.23□□□□□ -1.89
CLK1-202ENST00000409403 C1orf134Q5TEV5 83 aa3.23□□□□□ -1.89
CLK1-202ENST00000409403 KRTAP10-12P60413 245 aa3.22□□□□□ -1.89
CLK1-202ENST00000409403 DEFB4AO15263 64 aa3.21□□□□□ -1.9
CLK1-202ENST00000409403 ROMO1P60602 79 aa3.2□□□□□ -1.9
CLK1-202ENST00000409403 Q5VSD8 79 aa3.2□□□□□ -1.9
CLK1-202ENST00000409403 A0A0G2JQZ4 141 aa3.2□□□□□ -1.9
CLK1-202ENST00000409403 A0A1W2PNN7 141 aa3.2□□□□□ -1.9
CLK1-202ENST00000409403 ZNF861PO60384 105 aa3.2□□□□□ -1.9
CLK1-202ENST00000409403 DNAH10OSP0CZ25 163 aa3.2□□□□□ -1.9
CLK1-202ENST00000409403 PKHD1L1Q86WI1 4243 aa3.19□□□□□ -1.9
CLK1-202ENST00000409403 PRLHP81277 87 aa3.19□□□□□ -1.9
CLK1-202ENST00000409403 KRTAP25-1Q3LHN0 102 aa3.19□□□□□ -1.9
CLK1-202ENST00000409403 NUPR2A6NF83 97 aa3.17□□□□□ -1.9
CLK1-202ENST00000409403 Q96NJ1 140 aa3.17□□□□□ -1.9
CLK1-202ENST00000409403 IGLV7-43P04211 117 aa3.17□□□□□ -1.9
CLK1-202ENST00000409403 DNAH5Q8TE73 4624 aa3.16□□□□□ -1.9
CLK1-202ENST00000409403 KRTAP13-3Q3SY46 172 aa3.15□□□□□ -1.9
CLK1-202ENST00000409403 K7ERS5 55 aa3.13□□□□□ -1.91
CLK1-202ENST00000409403 LINC00483Q53H64 154 aa3.12□□□□□ -1.91
CLK1-202ENST00000409403 LCE3CQ5T5A8 94 aa3.12□□□□□ -1.91
CLK1-202ENST00000409403 A0A096LNI7 61 aa3.11□□□□□ -1.91
CLK1-202ENST00000409403 A8MUU9 505 aa3.11□□□□□ -1.91
CLK1-202ENST00000409403 KRTAP1-4P0C5Y4 121 aa3.11□□□□□ -1.91
CLK1-202ENST00000409403 Q5W150 140 aa3.11□□□□□ -1.91
CLK1-202ENST00000409403 LRP1Q07954 4544 aaKnown RBP3.1□□□□□ -1.91
CLK1-202ENST00000409403 KRTAP13-1Q8IUC0 172 aa3.09□□□□□ -1.91
CLK1-202ENST00000409403 ANAPC11Q9NYG5 84 aa3.08□□□□□ -1.92
CLK1-202ENST00000409403 SMR3BP02814 79 aaPredicted RBP3.07□□□□□ -1.92
CLK1-202ENST00000409403 KRTAP10-5P60370 271 aa3.07□□□□□ -1.92
CLK1-202ENST00000409403 LINC00304Q8N9R0 145 aa3.07□□□□□ -1.92
CLK1-202ENST00000409403 FAT3Q8TDW7 4589 aa3.05□□□□□ -1.92
CLK1-202ENST00000409403 CHTF8P0CG12 524 aa3.04□□□□□ -1.92
CLK1-202ENST00000409403 PANO1I0J062 215 aa3.04□□□□□ -1.92
CLK1-202ENST00000409403 P0C880 135 aa3.04□□□□□ -1.92
CLK1-202ENST00000409403 TNXBP22105 4242 aa3.03□□□□□ -1.92
CLK1-202ENST00000409403 SPINT4Q6UDR6 99 aa3.03□□□□□ -1.92
CLK1-202ENST00000409403 SPINK6Q6UWN8 80 aa3.03□□□□□ -1.92
CLK1-202ENST00000409403 A0A1B0GU33 70 aa3.02□□□□□ -1.93
CLK1-202ENST00000409403 H0YAA0 97 aa3.02□□□□□ -1.93
CLK1-202ENST00000409403 KRTAP11-1Q8IUC1 163 aa3.02□□□□□ -1.93
CLK1-202ENST00000409403 APLNQ9ULZ1 77 aa3.02□□□□□ -1.93
CLK1-202ENST00000409403 H1FX-AS1Q4G0G2 97 aa3.01□□□□□ -1.93
CLK1-202ENST00000409403 Q6ZSA8 131 aa3.01□□□□□ -1.93
CLK1-202ENST00000409403 SSBP3-AS1Q7Z2R9 100 aa3.01□□□□□ -1.93
CLK1-202ENST00000409403 C20orf166-AS1Q96NR2 134 aa3.01□□□□□ -1.93
CLK1-202ENST00000409403 PSORS1C2Q9UIG4 136 aa2.99□□□□□ -1.93
CLK1-202ENST00000409403 A0A087WTM6 91 aa2.98□□□□□ -1.93
CLK1-202ENST00000409403 SPACA4Q8TDM5 124 aa2.98□□□□□ -1.93
CLK1-202ENST00000409403 SPINK1P00995 79 aa2.97□□□□□ -1.93
CLK1-202ENST00000409403 COX6B2Q6YFQ2 88 aa2.97□□□□□ -1.93
CLK1-202ENST00000409403 KRTAP5-2Q701N4 177 aa2.96□□□□□ -1.94
CLK1-202ENST00000409403 CIRBP-AS1Q8TBR5 109 aa2.96□□□□□ -1.94
CLK1-202ENST00000409403 UBE2DNLQ8IWF7 75 aa2.95□□□□□ -1.94
CLK1-202ENST00000409403 CAMK2N1Q7Z7J9 78 aa2.95□□□□□ -1.94
CLK1-202ENST00000409403 LPAP08519 4548 aa2.94□□□□□ -1.94
CLK1-202ENST00000409403 MT1HL1P0DM35 61 aa2.93□□□□□ -1.94
CLK1-202ENST00000409403 SSPOA2VEC9 5147 aa2.93□□□□□ -1.94
CLK1-202ENST00000409403 RPL37P61927 97 aaKnown RBP2.92□□□□□ -1.94
CLK1-202ENST00000409403 KRTAP10-1P60331 282 aa2.92□□□□□ -1.94
CLK1-202ENST00000409403 CRIPTQ9P021 101 aa2.92□□□□□ -1.94
CLK1-202ENST00000409403 LUZP6Q538Z0 58 aa2.9□□□□□ -1.95
CLK1-202ENST00000409403 NBDYA0A0U1RRE5 68 aa2.88□□□□□ -1.95
CLK1-202ENST00000409403 KRTAP9-6A8MVA2 160 aa2.88□□□□□ -1.95
CLK1-202ENST00000409403 TPRXLQ17RH7 258 aa2.86□□□□□ -1.95
CLK1-202ENST00000409403 KRTAP10-4P60372 401 aaPredicted RBP2.85□□□□□ -1.95
CLK1-202ENST00000409403 LCE3EQ5T5B0 92 aa2.85□□□□□ -1.95
CLK1-202ENST00000409403 Q6ZRN7 208 aaPredicted RBP2.85□□□□□ -1.95
CLK1-202ENST00000409403 KRTAP4-3Q9BYR4 195 aa2.84□□□□□ -1.95
CLK1-202ENST00000409403 OBSCNQ5VST9 7968 aa2.84□□□□□ -1.96
CLK1-202ENST00000409403 DNAH8Q96JB1 4490 aa2.83□□□□□ -1.96
CLK1-202ENST00000409403 RPS29P62273 56 aaKnown RBP2.82□□□□□ -1.96
CLK1-202ENST00000409403 KRTAP20-1Q3LI63 56 aa2.82□□□□□ -1.96
CLK1-202ENST00000409403 SYNE2Q8WXH0 6885 aaKnown RBP2.81□□□□□ -1.96
CLK1-202ENST00000409403 USH2AO75445 5202 aa2.81□□□□□ -1.96
CLK1-202ENST00000409403 KRTAP12-2P59991 146 aa2.8□□□□□ -1.96
CLK1-202ENST00000409403 FCGBPQ9Y6R7 5405 aaPredicted RBP2.8□□□□□ -1.96
CLK1-202ENST00000409403 KRTAP13-2Q52LG2 175 aa2.79□□□□□ -1.96
CLK1-202ENST00000409403 NEBP20929 6669 aa2.79□□□□□ -1.96
CLK1-202ENST00000409403 S4R3F8 94 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms