RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 MT1HP80294 61 aa3.32□□□□□ -1.88
SPTLC3-201ENST00000399002 NF1P21359 2839 aa3.32□□□□□ -1.88
SPTLC3-201ENST00000399002 KRTAP10-5P60370 271 aa3.32□□□□□ -1.88
SPTLC3-201ENST00000399002 DNAH9Q9NYC9 4486 aa3.31□□□□□ -1.88
SPTLC3-201ENST00000399002 DNAH6Q9C0G6 4158 aa3.3□□□□□ -1.88
SPTLC3-201ENST00000399002 TENM1Q9UKZ4 2725 aa3.29□□□□□ -1.88
SPTLC3-201ENST00000399002 DNAH17Q9UFH2 4485 aa3.28□□□□□ -1.88
SPTLC3-201ENST00000399002 DNAH11Q96DT5 4516 aa3.28□□□□□ -1.88
SPTLC3-201ENST00000399002 DYNC1H1Q14204 4646 aaKnown RBP3.28□□□□□ -1.88
SPTLC3-201ENST00000399002 CMYA5Q8N3K9 4069 aa3.27□□□□□ -1.89
SPTLC3-201ENST00000399002 FBN1P35555 2871 aaKnown RBP3.26□□□□□ -1.89
SPTLC3-201ENST00000399002 MT2AP02795 61 aa3.25□□□□□ -1.89
SPTLC3-201ENST00000399002 KRTAP4-1Q9BYQ7 146 aa3.24□□□□□ -1.89
SPTLC3-201ENST00000399002 ANK2Q01484 3957 aa3.23□□□□□ -1.89
SPTLC3-201ENST00000399002 LCE3CQ5T5A8 94 aa3.23□□□□□ -1.89
SPTLC3-201ENST00000399002 LCE2DQ5TA82 110 aaPredicted RBP3.23□□□□□ -1.89
SPTLC3-201ENST00000399002 VPS13DQ5THJ4 4388 aa3.21□□□□□ -1.89
SPTLC3-201ENST00000399002 TRRAPQ9Y4A5 3859 aa3.21□□□□□ -1.9
SPTLC3-201ENST00000399002 VWFP04275 2813 aa3.2□□□□□ -1.9
SPTLC3-201ENST00000399002 DNAH8Q96JB1 4490 aa3.2□□□□□ -1.9
SPTLC3-201ENST00000399002 KRTAP19-5Q3LI72 72 aa3.18□□□□□ -1.9
SPTLC3-201ENST00000399002 DYNC2H1Q8NCM8 4307 aaKnown RBP3.18□□□□□ -1.9
SPTLC3-201ENST00000399002 KRTAP10-7P60409 375 aaPredicted RBP3.18□□□□□ -1.9
SPTLC3-201ENST00000399002 DNHD1Q96M86 4753 aa3.17□□□□□ -1.9
SPTLC3-201ENST00000399002 PKD1L1Q8TDX9 2849 aa3.17□□□□□ -1.9
SPTLC3-201ENST00000399002 SACSQ9NZJ4 4579 aa3.15□□□□□ -1.9
SPTLC3-201ENST00000399002 MT1FP04733 61 aa3.15□□□□□ -1.91
SPTLC3-201ENST00000399002 DNAH5Q8TE73 4624 aa3.14□□□□□ -1.91
SPTLC3-201ENST00000399002 FAT2Q9NYQ8 4349 aa3.13□□□□□ -1.91
SPTLC3-201ENST00000399002 DNAH7Q8WXX0 4024 aa3.12□□□□□ -1.91
SPTLC3-201ENST00000399002 HERC1Q15751 4861 aa3.12□□□□□ -1.91
SPTLC3-201ENST00000399002 HSPG2P98160 4391 aa3.12□□□□□ -1.91
SPTLC3-201ENST00000399002 KRTAP19-8Q3LI54 63 aa3.11□□□□□ -1.91
SPTLC3-201ENST00000399002 MEGF8Q7Z7M0 2845 aa3.09□□□□□ -1.91
SPTLC3-201ENST00000399002 PLECQ15149 4684 aaKnown RBP3.09□□□□□ -1.92
SPTLC3-201ENST00000399002 SPRR2FQ96RM1 72 aa3.07□□□□□ -1.92
SPTLC3-201ENST00000399002 PRKDCP78527 4128 aaKnown RBP3.06□□□□□ -1.92
SPTLC3-201ENST00000399002 MYCBP2O75592 4640 aa3.05□□□□□ -1.92
SPTLC3-201ENST00000399002 COL7A1Q02388 2944 aa3.05□□□□□ -1.92
SPTLC3-201ENST00000399002 FBN3Q75N90 2809 aa3.03□□□□□ -1.92
SPTLC3-201ENST00000399002 SPRR5A0A1B0GTR4 108 aa2.99□□□□□ -1.93
SPTLC3-201ENST00000399002 CSMD3Q7Z407 3707 aa2.98□□□□□ -1.93
SPTLC3-201ENST00000399002 LRP1BQ9NZR2 4599 aa2.98□□□□□ -1.93
SPTLC3-201ENST00000399002 KRTAP19-1Q8IUB9 90 aa2.96□□□□□ -1.94
SPTLC3-201ENST00000399002 MT1XP80297 61 aa2.96□□□□□ -1.94
SPTLC3-201ENST00000399002 FAT1Q14517 4588 aa2.95□□□□□ -1.94
SPTLC3-201ENST00000399002 SPRR2EP22531 72 aa2.95□□□□□ -1.94
SPTLC3-201ENST00000399002 SPRR2BP35325 72 aa2.95□□□□□ -1.94
SPTLC3-201ENST00000399002 SPRR2AP35326 72 aa2.95□□□□□ -1.94
SPTLC3-201ENST00000399002 LYSTQ99698 3801 aa2.94□□□□□ -1.94
SPTLC3-201ENST00000399002 APOBP04114 4563 aaKnown RBP2.94□□□□□ -1.94
SPTLC3-201ENST00000399002 STARD9Q9P2P6 4700 aa2.94□□□□□ -1.94
SPTLC3-201ENST00000399002 LRP1Q07954 4544 aaKnown RBP2.91□□□□□ -1.94
SPTLC3-201ENST00000399002 FRAS1Q86XX4 4008 aa2.91□□□□□ -1.94
SPTLC3-201ENST00000399002 FAT3Q8TDW7 4589 aa2.89□□□□□ -1.95
SPTLC3-201ENST00000399002 MT1BP07438 61 aa2.89□□□□□ -1.95
SPTLC3-201ENST00000399002 MT1GP13640 62 aa2.89□□□□□ -1.95
SPTLC3-201ENST00000399002 PKHD1L1Q86WI1 4243 aa2.88□□□□□ -1.95
SPTLC3-201ENST00000399002 SPRR2DP22532 72 aa2.88□□□□□ -1.95
SPTLC3-201ENST00000399002 LCE2BO14633 110 aa2.87□□□□□ -1.95
SPTLC3-201ENST00000399002 KMT2AQ03164 3969 aa2.87□□□□□ -1.95
SPTLC3-201ENST00000399002 MUC17Q685J3 4493 aa2.87□□□□□ -1.95
SPTLC3-201ENST00000399002 KRTAP12-4P60329 112 aa2.85□□□□□ -1.95
SPTLC3-201ENST00000399002 LCE3BQ5TA77 95 aa2.85□□□□□ -1.95
SPTLC3-201ENST00000399002 KRTAP9-8Q9BYQ0 159 aa2.85□□□□□ -1.95
SPTLC3-201ENST00000399002 HYDINQ4G0P3 5121 aa2.84□□□□□ -1.96
SPTLC3-201ENST00000399002 SRRM2Q9UQ35 2752 aaKnown RBP2.83□□□□□ -1.96
SPTLC3-201ENST00000399002 KMT2CQ8NEZ4 4911 aaKnown RBP2.83□□□□□ -1.96
SPTLC3-201ENST00000399002 PKD1P98161 4303 aa2.83□□□□□ -1.96
SPTLC3-201ENST00000399002 VPS13BQ7Z7G8 4022 aa2.83□□□□□ -1.96
SPTLC3-201ENST00000399002 KRTAP9-3Q9BYQ3 159 aa2.82□□□□□ -1.96
SPTLC3-201ENST00000399002 HECTD4Q9Y4D8 3996 aa2.81□□□□□ -1.96
SPTLC3-201ENST00000399002 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
SPTLC3-201ENST00000399002 RYR2Q92736 4967 aa2.78□□□□□ -1.96
SPTLC3-201ENST00000399002 LCE3EQ5T5B0 92 aa2.78□□□□□ -1.96
SPTLC3-201ENST00000399002 RYR3Q15413 4870 aa2.77□□□□□ -1.97
SPTLC3-201ENST00000399002 KRTAP17-1Q9BYP8 105 aa2.77□□□□□ -1.97
SPTLC3-201ENST00000399002 MT1LQ93083 61 aa2.76□□□□□ -1.97
SPTLC3-201ENST00000399002 LCE2CQ5TA81 110 aa2.76□□□□□ -1.97
SPTLC3-201ENST00000399002 KRTAP19-3Q7Z4W3 81 aa2.75□□□□□ -1.97
SPTLC3-201ENST00000399002 PKHD1P08F94 4074 aa2.74□□□□□ -1.97
SPTLC3-201ENST00000399002 MT1EP04732 61 aa2.73□□□□□ -1.97
SPTLC3-201ENST00000399002 LCE2AQ5TA79 106 aaPredicted RBP2.7□□□□□ -1.98
SPTLC3-201ENST00000399002 RYR1P21817 5038 aa2.68□□□□□ -1.98
SPTLC3-201ENST00000399002 KRTAP4-8A0A0G2JLE6 195 aa2.67□□□□□ -1.98
SPTLC3-201ENST00000399002 KRTAP4-8Q9BYQ9 185 aa2.67□□□□□ -1.98
SPTLC3-201ENST00000399002 EPPK1P58107 5090 aaKnown RBP2.66□□□□□ -1.98
SPTLC3-201ENST00000399002 TNXBP22105 4242 aa2.64□□□□□ -1.99
SPTLC3-201ENST00000399002 MT3P25713 68 aa2.63□□□□□ -1.99
SPTLC3-201ENST00000399002 KRTAP19-2Q3LHN2 52 aa2.61□□□□□ -1.99
SPTLC3-201ENST00000399002 KRTAP19-6Q3LI70 58 aa2.61□□□□□ -1.99
SPTLC3-201ENST00000399002 MT1MQ8N339 61 aa2.61□□□□□ -1.99
SPTLC3-201ENST00000399002 BIRC6Q9NR09 4857 aa2.6□□□□□ -1.99
SPTLC3-201ENST00000399002 KIAA1109Q2LD37 5005 aa2.58□□□□□ -2
SPTLC3-201ENST00000399002 HERC2O95714 4834 aa2.53□□□□□ -2
SPTLC3-201ENST00000399002 PRM1P04553 51 aa2.52□□□□□ -2.01
SPTLC3-201ENST00000399002 FLGP20930 4061 aaPredicted RBP2.51□□□□□ -2.01
SPTLC3-201ENST00000399002 KRTAP4-7Q9BYR0 210 aa2.51□□□□□ -2.01
SPTLC3-201ENST00000399002 MT1AP04731 61 aa2.49□□□□□ -2.01
SPTLC3-201ENST00000399002 LRP2P98164 4655 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms