RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 NBPF19A0A087WUL8 3843 aa2.86□□□□□ -1.95
UPF2-203ENST00000397053 MT1HP80294 61 aa2.84□□□□□ -1.95
UPF2-203ENST00000397053 VPS13CQ709C8 3753 aa2.83□□□□□ -1.96
UPF2-203ENST00000397053 MT2AP02795 61 aa2.83□□□□□ -1.96
UPF2-203ENST00000397053 AKAP9Q99996 3911 aa2.81□□□□□ -1.96
UPF2-203ENST00000397053 FAT1Q14517 4588 aa2.78□□□□□ -1.96
UPF2-203ENST00000397053 KRTAP4-1Q9BYQ7 146 aa2.77□□□□□ -1.97
UPF2-203ENST00000397053 SPRR2GQ9BYE4 73 aa2.75□□□□□ -1.97
UPF2-203ENST00000397053 SPRR2EP22531 72 aa2.75□□□□□ -1.97
UPF2-203ENST00000397053 SPRR2BP35325 72 aa2.75□□□□□ -1.97
UPF2-203ENST00000397053 SPRR2AP35326 72 aa2.75□□□□□ -1.97
UPF2-203ENST00000397053 PLECQ15149 4684 aaKnown RBP2.75□□□□□ -1.97
UPF2-203ENST00000397053 KRTAP19-5Q3LI72 72 aa2.74□□□□□ -1.97
UPF2-203ENST00000397053 MT1FP04733 61 aa2.74□□□□□ -1.97
UPF2-203ENST00000397053 SYNE1Q8NF91 8797 aaKnown RBP2.73□□□□□ -1.97
UPF2-203ENST00000397053 ZNF469Q96JG9 3925 aaPredicted RBP2.72□□□□□ -1.97
UPF2-203ENST00000397053 TRRAPQ9Y4A5 3859 aa2.72□□□□□ -1.97
UPF2-203ENST00000397053 HUWE1Q7Z6Z7 4374 aaKnown RBP2.72□□□□□ -1.97
UPF2-203ENST00000397053 KRTAP19-4Q3LI73 84 aa2.69□□□□□ -1.98
UPF2-203ENST00000397053 LCE3CQ5T5A8 94 aa2.69□□□□□ -1.98
UPF2-203ENST00000397053 FAT3Q8TDW7 4589 aa2.68□□□□□ -1.98
UPF2-203ENST00000397053 KRTAP12-4P60329 112 aa2.68□□□□□ -1.98
UPF2-203ENST00000397053 SPRR2DP22532 72 aa2.67□□□□□ -1.98
UPF2-203ENST00000397053 CMYA5Q8N3K9 4069 aa2.66□□□□□ -1.98
UPF2-203ENST00000397053 ANK2Q01484 3957 aa2.65□□□□□ -1.98
UPF2-203ENST00000397053 LCE2BO14633 110 aa2.64□□□□□ -1.99
UPF2-203ENST00000397053 DNAH5Q8TE73 4624 aa2.63□□□□□ -1.99
UPF2-203ENST00000397053 LCE3BQ5TA77 95 aa2.62□□□□□ -1.99
UPF2-203ENST00000397053 RYR1P21817 5038 aa2.62□□□□□ -1.99
UPF2-203ENST00000397053 DNAH3Q8TD57 4116 aa2.6□□□□□ -1.99
UPF2-203ENST00000397053 DNAH9Q9NYC9 4486 aa2.59□□□□□ -1.99
UPF2-203ENST00000397053 ALMS1Q8TCU4 4167 aa2.59□□□□□ -2
UPF2-203ENST00000397053 DNHD1Q96M86 4753 aa2.57□□□□□ -2
UPF2-203ENST00000397053 MT1GP13640 62 aa2.55□□□□□ -2
UPF2-203ENST00000397053 DNAH1Q9P2D7 4330 aa2.54□□□□□ -2
UPF2-203ENST00000397053 EPPK1P58107 5090 aaKnown RBP2.53□□□□□ -2
UPF2-203ENST00000397053 KRTAP19-8Q3LI54 63 aa2.53□□□□□ -2
UPF2-203ENST00000397053 DNAH10Q8IVF4 4471 aa2.53□□□□□ -2
UPF2-203ENST00000397053 LCE2CQ5TA81 110 aa2.51□□□□□ -2.01
UPF2-203ENST00000397053 DNAH11Q96DT5 4516 aa2.51□□□□□ -2.01
UPF2-203ENST00000397053 VPS13DQ5THJ4 4388 aa2.51□□□□□ -2.01
UPF2-203ENST00000397053 KRTAP19-1Q8IUB9 90 aa2.5□□□□□ -2.01
UPF2-203ENST00000397053 DNAH17Q9UFH2 4485 aa2.49□□□□□ -2.01
UPF2-203ENST00000397053 LCE2DQ5TA82 110 aaPredicted RBP2.49□□□□□ -2.01
UPF2-203ENST00000397053 DYNC2H1Q8NCM8 4307 aaKnown RBP2.49□□□□□ -2.01
UPF2-203ENST00000397053 CSMD3Q7Z407 3707 aa2.48□□□□□ -2.01
UPF2-203ENST00000397053 LCE3DQ9BYE3 92 aa2.48□□□□□ -2.01
UPF2-203ENST00000397053 LRP1Q07954 4544 aaKnown RBP2.47□□□□□ -2.01
UPF2-203ENST00000397053 APOBP04114 4563 aaKnown RBP2.47□□□□□ -2.01
UPF2-203ENST00000397053 DNAH8Q96JB1 4490 aa2.47□□□□□ -2.01
UPF2-203ENST00000397053 SACSQ9NZJ4 4579 aa2.45□□□□□ -2.02
UPF2-203ENST00000397053 DNAH7Q8WXX0 4024 aa2.45□□□□□ -2.02
UPF2-203ENST00000397053 DNAH2Q9P225 4427 aa2.45□□□□□ -2.02
UPF2-203ENST00000397053 MT1XP80297 61 aa2.45□□□□□ -2.02
UPF2-203ENST00000397053 LYSTQ99698 3801 aa2.44□□□□□ -2.02
UPF2-203ENST00000397053 KRTAP4-8A0A0G2JLE6 195 aa2.44□□□□□ -2.02
UPF2-203ENST00000397053 KRTAP4-8Q9BYQ9 185 aa2.44□□□□□ -2.02
UPF2-203ENST00000397053 STARD9Q9P2P6 4700 aa2.44□□□□□ -2.02
UPF2-203ENST00000397053 LCE3EQ5T5B0 92 aa2.44□□□□□ -2.02
UPF2-203ENST00000397053 DNAH6Q9C0G6 4158 aa2.42□□□□□ -2.02
UPF2-203ENST00000397053 MT1BP07438 61 aa2.42□□□□□ -2.02
UPF2-203ENST00000397053 SPRR5A0A1B0GTR4 108 aa2.42□□□□□ -2.02
UPF2-203ENST00000397053 KIAA1109Q2LD37 5005 aa2.41□□□□□ -2.02
UPF2-203ENST00000397053 LRP1BQ9NZR2 4599 aa2.41□□□□□ -2.02
UPF2-203ENST00000397053 DYNC1H1Q14204 4646 aaKnown RBP2.41□□□□□ -2.02
UPF2-203ENST00000397053 PRKDCP78527 4128 aaKnown RBP2.4□□□□□ -2.03
UPF2-203ENST00000397053 HECTD4Q9Y4D8 3996 aa2.39□□□□□ -2.03
UPF2-203ENST00000397053 KMT2AQ03164 3969 aa2.39□□□□□ -2.03
UPF2-203ENST00000397053 PCLOQ9Y6V0 5065 aa2.39□□□□□ -2.03
UPF2-203ENST00000397053 KRTAP19-3Q7Z4W3 81 aa2.38□□□□□ -2.03
UPF2-203ENST00000397053 KRTAP9-8Q9BYQ0 159 aa2.38□□□□□ -2.03
UPF2-203ENST00000397053 FRAS1Q86XX4 4008 aa2.38□□□□□ -2.03
UPF2-203ENST00000397053 MT4P47944 62 aa2.38□□□□□ -2.03
UPF2-203ENST00000397053 RYR3Q15413 4870 aa2.36□□□□□ -2.03
UPF2-203ENST00000397053 MYCBP2O75592 4640 aa2.36□□□□□ -2.03
UPF2-203ENST00000397053 KRTAP9-3Q9BYQ3 159 aa2.35□□□□□ -2.03
UPF2-203ENST00000397053 MT3P25713 68 aa2.34□□□□□ -2.03
UPF2-203ENST00000397053 LCE1BQ5T7P3 118 aa2.34□□□□□ -2.04
UPF2-203ENST00000397053 KRTAP17-1Q9BYP8 105 aa2.33□□□□□ -2.04
UPF2-203ENST00000397053 FAT2Q9NYQ8 4349 aa2.33□□□□□ -2.04
UPF2-203ENST00000397053 VPS13BQ7Z7G8 4022 aa2.33□□□□□ -2.04
UPF2-203ENST00000397053 LCE1DQ5T752 114 aa2.31□□□□□ -2.04
UPF2-203ENST00000397053 MT1LQ93083 61 aa2.3□□□□□ -2.04
UPF2-203ENST00000397053 KRTAP9-2Q9BYQ4 174 aa2.3□□□□□ -2.04
UPF2-203ENST00000397053 OBSCNQ5VST9 7968 aa2.28□□□□□ -2.04
UPF2-203ENST00000397053 HERC2O95714 4834 aa2.28□□□□□ -2.04
UPF2-203ENST00000397053 KRTAP4-7Q9BYR0 210 aa2.27□□□□□ -2.05
UPF2-203ENST00000397053 MT1EP04732 61 aa2.26□□□□□ -2.05
UPF2-203ENST00000397053 RYR2Q92736 4967 aa2.25□□□□□ -2.05
UPF2-203ENST00000397053 HERC1Q15751 4861 aa2.25□□□□□ -2.05
UPF2-203ENST00000397053 KRTAP9-6A0A140TA67 174 aa2.24□□□□□ -2.05
UPF2-203ENST00000397053 FSIP2Q5CZC0 6907 aa2.24□□□□□ -2.05
UPF2-203ENST00000397053 HYDINQ4G0P3 5121 aa2.23□□□□□ -2.05
UPF2-203ENST00000397053 PKD1P98161 4303 aa2.23□□□□□ -2.05
UPF2-203ENST00000397053 MT1MQ8N339 61 aa2.23□□□□□ -2.05
UPF2-203ENST00000397053 KMT2CQ8NEZ4 4911 aaKnown RBP2.22□□□□□ -2.05
UPF2-203ENST00000397053 MACF1Q9UPN3 7388 aaKnown RBP2.22□□□□□ -2.05
UPF2-203ENST00000397053 UBR4Q5T4S7 5183 aa2.22□□□□□ -2.05
UPF2-203ENST00000397053 LCE5AQ5TCM9 118 aa2.21□□□□□ -2.06
UPF2-203ENST00000397053 PKHD1L1Q86WI1 4243 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 281.9 ms