RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 DNAH5Q8TE73 4624 aa8.61□□□□□ -1.03
SHANK1-203ENST00000391813 DNAH11Q96DT5 4516 aa8.6□□□□□ -1.03
SHANK1-203ENST00000391813 DNAH1Q9P2D7 4330 aa8.55□□□□□ -1.04
SHANK1-203ENST00000391813 DNAH10Q8IVF4 4471 aa8.53□□□□□ -1.04
SHANK1-203ENST00000391813 KRTAP10-12P60413 245 aa8.52□□□□□ -1.05
SHANK1-203ENST00000391813 PLECQ15149 4684 aaKnown RBP8.5□□□□□ -1.05
SHANK1-203ENST00000391813 KRTAP12-3P60328 96 aa8.45□□□□□ -1.06
SHANK1-203ENST00000391813 VPS13DQ5THJ4 4388 aa8.37□□□□□ -1.07
SHANK1-203ENST00000391813 LORP23490 312 aaPredicted RBP8.35□□□□□ -1.07
SHANK1-203ENST00000391813 ANK2Q01484 3957 aa8.35□□□□□ -1.07
SHANK1-203ENST00000391813 CSMD3Q7Z407 3707 aa8.35□□□□□ -1.07
SHANK1-203ENST00000391813 LCE3AQ5TA76 89 aa8.34□□□□□ -1.07
SHANK1-203ENST00000391813 DYNC1H1Q14204 4646 aaKnown RBP8.31□□□□□ -1.08
SHANK1-203ENST00000391813 DNAH17Q9UFH2 4485 aa8.22□□□□□ -1.09
SHANK1-203ENST00000391813 LRP1BQ9NZR2 4599 aa8.15□□□□□ -1.1
SHANK1-203ENST00000391813 PRKDCP78527 4128 aaKnown RBP8.15□□□□□ -1.1
SHANK1-203ENST00000391813 RYR1P21817 5038 aa8.15□□□□□ -1.1
SHANK1-203ENST00000391813 DNAH3Q8TD57 4116 aa8.14□□□□□ -1.11
SHANK1-203ENST00000391813 KRTAP4-1Q9BYQ7 146 aa8.13□□□□□ -1.11
SHANK1-203ENST00000391813 STARD9Q9P2P6 4700 aa8.13□□□□□ -1.11
SHANK1-203ENST00000391813 MT1HP80294 61 aa8.09□□□□□ -1.11
SHANK1-203ENST00000391813 CMYA5Q8N3K9 4069 aa8.06□□□□□ -1.12
SHANK1-203ENST00000391813 FAT1Q14517 4588 aa8.05□□□□□ -1.12
SHANK1-203ENST00000391813 DNAH2Q9P225 4427 aa8.05□□□□□ -1.12
SHANK1-203ENST00000391813 DYNC2H1Q8NCM8 4307 aaKnown RBP8.02□□□□□ -1.13
SHANK1-203ENST00000391813 FAT2Q9NYQ8 4349 aa8.02□□□□□ -1.13
SHANK1-203ENST00000391813 KIAA1109Q2LD37 5005 aa7.97□□□□□ -1.13
SHANK1-203ENST00000391813 SACSQ9NZJ4 4579 aa7.94□□□□□ -1.14
SHANK1-203ENST00000391813 MT2AP02795 61 aa7.92□□□□□ -1.14
SHANK1-203ENST00000391813 RYR3Q15413 4870 aa7.88□□□□□ -1.15
SHANK1-203ENST00000391813 CRCT1Q9UGL9 99 aa7.87□□□□□ -1.15
SHANK1-203ENST00000391813 KRTAP8-1Q8IUC2 63 aa7.81□□□□□ -1.16
SHANK1-203ENST00000391813 SPRR2GQ9BYE4 73 aa7.8□□□□□ -1.16
SHANK1-203ENST00000391813 KRTAP17-1Q9BYP8 105 aa7.78□□□□□ -1.16
SHANK1-203ENST00000391813 RYR2Q92736 4967 aa7.78□□□□□ -1.16
SHANK1-203ENST00000391813 KMT2AQ03164 3969 aa7.77□□□□□ -1.17
SHANK1-203ENST00000391813 BIRC6Q9NR09 4857 aa7.77□□□□□ -1.17
SHANK1-203ENST00000391813 DNAH6Q9C0G6 4158 aa7.74□□□□□ -1.17
SHANK1-203ENST00000391813 MT1FP04733 61 aa7.71□□□□□ -1.17
SHANK1-203ENST00000391813 KRTAP10-5P60370 271 aa7.7□□□□□ -1.18
SHANK1-203ENST00000391813 DNAH8Q96JB1 4490 aa7.69□□□□□ -1.18
SHANK1-203ENST00000391813 DNAH7Q8WXX0 4024 aa7.67□□□□□ -1.18
SHANK1-203ENST00000391813 APOBP04114 4563 aaKnown RBP7.63□□□□□ -1.19
SHANK1-203ENST00000391813 HERC2O95714 4834 aa7.6□□□□□ -1.19
SHANK1-203ENST00000391813 FAT3Q8TDW7 4589 aa7.51□□□□□ -1.21
SHANK1-203ENST00000391813 KRTAP19-4Q3LI73 84 aa7.49□□□□□ -1.21
SHANK1-203ENST00000391813 VPS13BQ7Z7G8 4022 aa7.49□□□□□ -1.21
SHANK1-203ENST00000391813 LYSTQ99698 3801 aa7.49□□□□□ -1.21
SHANK1-203ENST00000391813 SPRR5A0A1B0GTR4 108 aa7.48□□□□□ -1.21
SHANK1-203ENST00000391813 LCE3CQ5T5A8 94 aa7.46□□□□□ -1.21
SHANK1-203ENST00000391813 HECTD4Q9Y4D8 3996 aa7.45□□□□□ -1.22
SHANK1-203ENST00000391813 HYDINQ4G0P3 5121 aa7.44□□□□□ -1.22
SHANK1-203ENST00000391813 KRTAP19-8Q3LI54 63 aa7.4□□□□□ -1.22
SHANK1-203ENST00000391813 KRTAP19-5Q3LI72 72 aa7.36□□□□□ -1.23
SHANK1-203ENST00000391813 LRP1Q07954 4544 aaKnown RBP7.34□□□□□ -1.23
SHANK1-203ENST00000391813 HERC1Q15751 4861 aa7.33□□□□□ -1.24
SHANK1-203ENST00000391813 MYCBP2O75592 4640 aa7.33□□□□□ -1.24
SHANK1-203ENST00000391813 SPRR2FQ96RM1 72 aa7.32□□□□□ -1.24
SHANK1-203ENST00000391813 KRTAP19-1Q8IUB9 90 aa7.3□□□□□ -1.24
SHANK1-203ENST00000391813 PCLOQ9Y6V0 5065 aa7.26□□□□□ -1.25
SHANK1-203ENST00000391813 LCE2CQ5TA81 110 aa7.24□□□□□ -1.25
SHANK1-203ENST00000391813 HSPG2P98160 4391 aa7.24□□□□□ -1.25
SHANK1-203ENST00000391813 KRTAP9-8Q9BYQ0 159 aa7.23□□□□□ -1.25
SHANK1-203ENST00000391813 PKD1P98161 4303 aa7.2□□□□□ -1.26
SHANK1-203ENST00000391813 KMT2CQ8NEZ4 4911 aaKnown RBP7.19□□□□□ -1.26
SHANK1-203ENST00000391813 PKHD1P08F94 4074 aa7.19□□□□□ -1.26
SHANK1-203ENST00000391813 FRAS1Q86XX4 4008 aa7.18□□□□□ -1.26
SHANK1-203ENST00000391813 KRTAP10-7P60409 375 aaPredicted RBP7.13□□□□□ -1.27
SHANK1-203ENST00000391813 PKHD1L1Q86WI1 4243 aa7.09□□□□□ -1.27
SHANK1-203ENST00000391813 KRTAP9-3Q9BYQ3 159 aa7.08□□□□□ -1.28
SHANK1-203ENST00000391813 MT1BP07438 61 aa7.07□□□□□ -1.28
SHANK1-203ENST00000391813 LRP2P98164 4655 aa7.02□□□□□ -1.29
SHANK1-203ENST00000391813 MT1XP80297 61 aa6.99□□□□□ -1.29
SHANK1-203ENST00000391813 KRTAP19-2Q3LHN2 52 aa6.95□□□□□ -1.3
SHANK1-203ENST00000391813 SPRR2EP22531 72 aa6.93□□□□□ -1.3
SHANK1-203ENST00000391813 SPRR2BP35325 72 aa6.93□□□□□ -1.3
SHANK1-203ENST00000391813 SPRR2AP35326 72 aa6.93□□□□□ -1.3
SHANK1-203ENST00000391813 EPPK1P58107 5090 aaKnown RBP6.91□□□□□ -1.3
SHANK1-203ENST00000391813 KRTAP12-4P60329 112 aa6.9□□□□□ -1.3
SHANK1-203ENST00000391813 ABCA13Q86UQ4 5058 aa6.89□□□□□ -1.31
SHANK1-203ENST00000391813 TNXBP22105 4242 aa6.75□□□□□ -1.33
SHANK1-203ENST00000391813 LCE2BO14633 110 aa6.74□□□□□ -1.33
SHANK1-203ENST00000391813 SPRR2DP22532 72 aa6.73□□□□□ -1.33
SHANK1-203ENST00000391813 MT1GP13640 62 aa6.7□□□□□ -1.34
SHANK1-203ENST00000391813 LCE2AQ5TA79 106 aaPredicted RBP6.7□□□□□ -1.34
SHANK1-203ENST00000391813 KRTAP9-2Q9BYQ4 174 aa6.69□□□□□ -1.34
SHANK1-203ENST00000391813 LCE2DQ5TA82 110 aaPredicted RBP6.68□□□□□ -1.34
SHANK1-203ENST00000391813 MUC17Q685J3 4493 aa6.63□□□□□ -1.35
SHANK1-203ENST00000391813 LCE3BQ5TA77 95 aa6.63□□□□□ -1.35
SHANK1-203ENST00000391813 KRTAP19-6Q3LI70 58 aa6.62□□□□□ -1.35
SHANK1-203ENST00000391813 KRTAP4-8A0A0G2JLE6 195 aa6.6□□□□□ -1.35
SHANK1-203ENST00000391813 KRTAP4-8Q9BYQ9 185 aa6.6□□□□□ -1.35
SHANK1-203ENST00000391813 LPAP08519 4548 aa6.59□□□□□ -1.35
SHANK1-203ENST00000391813 UBR4Q5T4S7 5183 aa6.56□□□□□ -1.36
SHANK1-203ENST00000391813 FLGP20930 4061 aaPredicted RBP6.52□□□□□ -1.36
SHANK1-203ENST00000391813 LCE3DQ9BYE3 92 aa6.51□□□□□ -1.37
SHANK1-203ENST00000391813 RNF213Q63HN8 5207 aa6.48□□□□□ -1.37
SHANK1-203ENST00000391813 LCE3EQ5T5B0 92 aa6.47□□□□□ -1.37
SHANK1-203ENST00000391813 KRTAP19-3Q7Z4W3 81 aa6.46□□□□□ -1.38
SHANK1-203ENST00000391813 FAT4Q6V0I7 4981 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms