RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 STARD9Q9P2P6 4700 aa6.9□□□□□ -1.3
RTF1-201ENST00000389629 KRTAP21-3Q3LHN1 58 aa6.88□□□□□ -1.31
RTF1-201ENST00000389629 ALMS1Q8TCU4 4167 aa6.86□□□□□ -1.31
RTF1-201ENST00000389629 DNAH3Q8TD57 4116 aa6.85□□□□□ -1.31
RTF1-201ENST00000389629 FRAS1Q86XX4 4008 aa6.82□□□□□ -1.32
RTF1-201ENST00000389629 KRTAP10-4P60372 401 aaPredicted RBP6.82□□□□□ -1.32
RTF1-201ENST00000389629 DNAH2Q9P225 4427 aa6.8□□□□□ -1.32
RTF1-201ENST00000389629 LRP1BQ9NZR2 4599 aa6.8□□□□□ -1.32
RTF1-201ENST00000389629 DNAH5Q8TE73 4624 aa6.8□□□□□ -1.32
RTF1-201ENST00000389629 KMT2AQ03164 3969 aa6.79□□□□□ -1.32
RTF1-201ENST00000389629 CMYA5Q8N3K9 4069 aa6.79□□□□□ -1.32
RTF1-201ENST00000389629 DNAH7Q8WXX0 4024 aa6.73□□□□□ -1.33
RTF1-201ENST00000389629 PRKDCP78527 4128 aaKnown RBP6.7□□□□□ -1.34
RTF1-201ENST00000389629 HECTD4Q9Y4D8 3996 aa6.66□□□□□ -1.34
RTF1-201ENST00000389629 FAT1Q14517 4588 aa6.65□□□□□ -1.34
RTF1-201ENST00000389629 MT1HL1P0DM35 61 aa6.62□□□□□ -1.35
RTF1-201ENST00000389629 VPS13BQ7Z7G8 4022 aa6.61□□□□□ -1.35
RTF1-201ENST00000389629 DNAH6Q9C0G6 4158 aa6.6□□□□□ -1.35
RTF1-201ENST00000389629 DYNC2H1Q8NCM8 4307 aaKnown RBP6.57□□□□□ -1.36
RTF1-201ENST00000389629 DNHD1Q96M86 4753 aa6.57□□□□□ -1.36
RTF1-201ENST00000389629 DYNC1H1Q14204 4646 aaKnown RBP6.55□□□□□ -1.36
RTF1-201ENST00000389629 SACSQ9NZJ4 4579 aa6.49□□□□□ -1.37
RTF1-201ENST00000389629 LORP23490 312 aaPredicted RBP6.44□□□□□ -1.38
RTF1-201ENST00000389629 KRTAP10-10P60014 251 aa6.44□□□□□ -1.38
RTF1-201ENST00000389629 MYCBP2O75592 4640 aa6.42□□□□□ -1.38
RTF1-201ENST00000389629 FAT2Q9NYQ8 4349 aa6.34□□□□□ -1.39
RTF1-201ENST00000389629 KRTAP4-5Q9BYR2 181 aa6.31□□□□□ -1.4
RTF1-201ENST00000389629 APOBP04114 4563 aaKnown RBP6.3□□□□□ -1.4
RTF1-201ENST00000389629 HYDINQ4G0P3 5121 aa6.27□□□□□ -1.41
RTF1-201ENST00000389629 LRP1Q07954 4544 aaKnown RBP6.26□□□□□ -1.41
RTF1-201ENST00000389629 PKHD1P08F94 4074 aa6.21□□□□□ -1.41
RTF1-201ENST00000389629 RYR1P21817 5038 aa6.16□□□□□ -1.42
RTF1-201ENST00000389629 PRO2289Q9P1D8 64 aa6.15□□□□□ -1.43
RTF1-201ENST00000389629 FAT3Q8TDW7 4589 aa6.14□□□□□ -1.43
RTF1-201ENST00000389629 KRTAP4-1Q9BYQ7 146 aa6.14□□□□□ -1.43
RTF1-201ENST00000389629 PKD1P98161 4303 aa6.12□□□□□ -1.43
RTF1-201ENST00000389629 INE1O15225 51 aa6.1□□□□□ -1.43
RTF1-201ENST00000389629 KIAA1109Q2LD37 5005 aa6.06□□□□□ -1.44
RTF1-201ENST00000389629 LCE3AQ5TA76 89 aa6.06□□□□□ -1.44
RTF1-201ENST00000389629 KRTAP17-1Q9BYP8 105 aa6.03□□□□□ -1.44
RTF1-201ENST00000389629 KRTAP23-1A1A580 65 aa6.01□□□□□ -1.45
RTF1-201ENST00000389629 LRP2P98164 4655 aa6□□□□□ -1.45
RTF1-201ENST00000389629 RYR3Q15413 4870 aa5.96□□□□□ -1.46
RTF1-201ENST00000389629 HSPG2P98160 4391 aa5.94□□□□□ -1.46
RTF1-201ENST00000389629 KRTAP12-3P60328 96 aa5.93□□□□□ -1.46
RTF1-201ENST00000389629 KRTAP10-12P60413 245 aa5.93□□□□□ -1.46
RTF1-201ENST00000389629 RYR2Q92736 4967 aa5.89□□□□□ -1.47
RTF1-201ENST00000389629 PKHD1L1Q86WI1 4243 aa5.88□□□□□ -1.47
RTF1-201ENST00000389629 KMT2CQ8NEZ4 4911 aaKnown RBP5.87□□□□□ -1.47
RTF1-201ENST00000389629 LPAP08519 4548 aa5.78□□□□□ -1.48
RTF1-201ENST00000389629 TNXBP22105 4242 aa5.77□□□□□ -1.49
RTF1-201ENST00000389629 SPRR2GQ9BYE4 73 aa5.71□□□□□ -1.5
RTF1-201ENST00000389629 MT2AP02795 61 aa5.61□□□□□ -1.51
RTF1-201ENST00000389629 MT1HP80294 61 aa5.61□□□□□ -1.51
RTF1-201ENST00000389629 MT1FP04733 61 aa5.58□□□□□ -1.52
RTF1-201ENST00000389629 KRTAP19-1Q8IUB9 90 aa5.57□□□□□ -1.52
RTF1-201ENST00000389629 CRCT1Q9UGL9 99 aa5.56□□□□□ -1.52
RTF1-201ENST00000389629 SPRR5A0A1B0GTR4 108 aa5.55□□□□□ -1.52
RTF1-201ENST00000389629 KRTAP8-1Q8IUC2 63 aa5.53□□□□□ -1.52
RTF1-201ENST00000389629 HERC2O95714 4834 aa5.53□□□□□ -1.52
RTF1-201ENST00000389629 KRTAP19-2Q3LHN2 52 aa5.47□□□□□ -1.53
RTF1-201ENST00000389629 MUC17Q685J3 4493 aa5.4□□□□□ -1.55
RTF1-201ENST00000389629 ABCA13Q86UQ4 5058 aa5.37□□□□□ -1.55
RTF1-201ENST00000389629 KRTAP19-5Q3LI72 72 aa5.36□□□□□ -1.55
RTF1-201ENST00000389629 KRTAP10-7P60409 375 aaPredicted RBP5.36□□□□□ -1.55
RTF1-201ENST00000389629 EPPK1P58107 5090 aaKnown RBP5.36□□□□□ -1.55
RTF1-201ENST00000389629 LCE2CQ5TA81 110 aa5.35□□□□□ -1.55
RTF1-201ENST00000389629 KRTAP10-5P60370 271 aa5.34□□□□□ -1.55
RTF1-201ENST00000389629 FLGP20930 4061 aaPredicted RBP5.34□□□□□ -1.56
RTF1-201ENST00000389629 KRTAP19-8Q3LI54 63 aa5.33□□□□□ -1.56
RTF1-201ENST00000389629 MT1XP80297 61 aa5.33□□□□□ -1.56
RTF1-201ENST00000389629 LCE3CQ5T5A8 94 aa5.33□□□□□ -1.56
RTF1-201ENST00000389629 MT1BP07438 61 aa5.28□□□□□ -1.56
RTF1-201ENST00000389629 KRTAP9-8Q9BYQ0 159 aa5.26□□□□□ -1.57
RTF1-201ENST00000389629 MUC2Q02817 5179 aa5.24□□□□□ -1.57
RTF1-201ENST00000389629 HERC1Q15751 4861 aa5.22□□□□□ -1.57
RTF1-201ENST00000389629 BIRC6Q9NR09 4857 aa5.12□□□□□ -1.59
RTF1-201ENST00000389629 PCLOQ9Y6V0 5065 aa5.11□□□□□ -1.59
RTF1-201ENST00000389629 FAT4Q6V0I7 4981 aa5.07□□□□□ -1.6
RTF1-201ENST00000389629 KRTAP4-8A0A0G2JLE6 195 aa5.06□□□□□ -1.6
RTF1-201ENST00000389629 KRTAP4-8Q9BYQ9 185 aa5.06□□□□□ -1.6
RTF1-201ENST00000389629 KRTAP9-3Q9BYQ3 159 aa5.05□□□□□ -1.6
RTF1-201ENST00000389629 HMCN2Q8NDA2 5059 aa5.03□□□□□ -1.6
RTF1-201ENST00000389629 UBR4Q5T4S7 5183 aa4.94□□□□□ -1.62
RTF1-201ENST00000389629 KRTAP4-7Q9BYR0 210 aa4.94□□□□□ -1.62
RTF1-201ENST00000389629 RNF213Q63HN8 5207 aa4.94□□□□□ -1.62
RTF1-201ENST00000389629 KRTAP12-4P60329 112 aa4.92□□□□□ -1.62
RTF1-201ENST00000389629 LCE2BO14633 110 aa4.86□□□□□ -1.63
RTF1-201ENST00000389629 KRTAP19-4Q3LI73 84 aa4.83□□□□□ -1.64
RTF1-201ENST00000389629 MT1GP13640 62 aa4.82□□□□□ -1.64
RTF1-201ENST00000389629 LCE3BQ5TA77 95 aa4.77□□□□□ -1.65
RTF1-201ENST00000389629 SYNE1Q8NF91 8797 aaKnown RBP4.73□□□□□ -1.65
RTF1-201ENST00000389629 MT1LQ93083 61 aa4.72□□□□□ -1.65
RTF1-201ENST00000389629 SPRR2FQ96RM1 72 aa4.7□□□□□ -1.66
RTF1-201ENST00000389629 MT1EP04732 61 aa4.66□□□□□ -1.66
RTF1-201ENST00000389629 FSIP2Q5CZC0 6907 aa4.63□□□□□ -1.67
RTF1-201ENST00000389629 KRTAP9-6A8MVA2 160 aa4.63□□□□□ -1.67
RTF1-201ENST00000389629 KRTAP19-7Q3SYF9 63 aa4.62□□□□□ -1.67
RTF1-201ENST00000389629 LOC100996750A0A140TA64 210 aa4.59□□□□□ -1.67
RTF1-201ENST00000389629 KRTAP2-3P0C7H8 128 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 276.3 ms