RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 PLXNC1O60486 1568 aa-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 HMGN2P05204 90 aaKnown RBP-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 SFTA3P0C7M3 94 aa-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 LINC00032P0C843 101 aa-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 IAPPP10997 89 aa-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 MYO5CQ9NQX4 1742 aa-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 ATP7AQ04656 1500 aa-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 HMGA1P17096 107 aaKnown RBP-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 PRLHP81277 87 aa-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 PYY3Q5JQD4 70 aa-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 ACBD7Q8N6N7 88 aa-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 CDC42BPAQ5VT25 1732 aa-0.29□□□□□ -2.46
VPS13A-206ENST00000376646 URB2Q14146 1524 aaKnown RBP-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 CEP162Q5TB80 1403 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 MYMXA0A1B0GTQ4 84 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 A0A1B0GUT8 65 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 MT1GP13640 62 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 PIK3C2BO00750 1634 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 ARHGAP35Q9NRY4 1499 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 NDUFA4O00483 81 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 CCL22O00626 93 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 DEFB1P60022 68 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 PKIAP61925 76 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 PLGLAQ15195 96 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 ZNF720Q7Z2F6 126 aa-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 S100A16Q96FQ6 103 aaKnown RBP-0.3□□□□□ -2.46
VPS13A-206ENST00000376646 VPS8Q8N3P4 1428 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 UACAQ9BZF9 1416 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 PLIN4Q96Q06 1357 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 RPS27P42677 84 aaKnown RBP-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 NREPQ16612 68 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 RPS27LQ71UM5 84 aaKnown RBP-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 CFAP74Q9C0B2 1584 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 PPLO60437 1756 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 RRBP1Q9P2E9 1410 aaKnown RBP-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 CEBPZOSA8MTT3 80 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 H3BUT2 72 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 CYB5AP00167 134 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 SMIM13P0DJ93 91 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 MT1XP80297 61 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 PEA15Q15121 130 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 COX6B2Q6YFQ2 88 aa-0.31□□□□□ -2.46
VPS13A-206ENST00000376646 UMAD1C9J7I0 102 aa-0.32□□□□□ -2.46
VPS13A-206ENST00000376646 K7EMI3 77 aa-0.32□□□□□ -2.46
VPS13A-206ENST00000376646 HMGN3Q15651 99 aa-0.32□□□□□ -2.46
VPS13A-206ENST00000376646 ENHOQ6UWT2 76 aa-0.32□□□□□ -2.46
VPS13A-206ENST00000376646 LINC00643Q86TS7 51 aa-0.32□□□□□ -2.46
VPS13A-206ENST00000376646 DUOX1Q9NRD9 1551 aa-0.32□□□□□ -2.46
VPS13A-206ENST00000376646 C9orf92A6NGG3 77 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 GYPAP02724 150 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 C3orf79P0CE67 100 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 RABAC1Q9UI14 185 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 HILPDAQ9Y5L2 63 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 CCDC180Q9P1Z9 1646 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 CCNB3Q8WWL7 1395 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 ERICH3Q5RHP9 1530 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 IGLV5-48A0A075B6I7 105 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 IFI27P40305 119 aaPredicted RBP-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 WT1-ASQ06250 92 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 LMTK2Q8IWU2 1503 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 MROH2AA6NES4 1674 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 CD163L1Q9NR16 1453 aa-0.33□□□□□ -2.46
VPS13A-206ENST00000376646 A0A087WXM4 84 aa-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 H3BVH4 76 aa-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 S100A8P05109 93 aa-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 SNRPFP62306 86 aaKnown RBP-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 BVES-AS1Q5T3Y7 98 aa-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 Q9H521 79 aa-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 IQGAP3Q86VI3 1631 aa-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 FAM208AQ9UK61 1670 aaKnown RBP-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 FCER1GP30273 86 aa-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 RPL38P63173 70 aaKnown RBP-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 MINOS1Q5TGZ0 78 aa-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 ABCC1P33527 1531 aa-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 ABCA9Q8IUA7 1624 aa-0.34□□□□□ -2.46
VPS13A-206ENST00000376646 CLPSL2Q6UWE3 100 aa-0.35□□□□□ -2.47
VPS13A-206ENST00000376646 MT1MQ8N339 61 aa-0.35□□□□□ -2.47
VPS13A-206ENST00000376646 KCNQ1DNQ9H478 68 aa-0.35□□□□□ -2.47
VPS13A-206ENST00000376646 ST20Q9HBF5 79 aa-0.35□□□□□ -2.47
VPS13A-206ENST00000376646 MT1EP04732 61 aa-0.35□□□□□ -2.47
VPS13A-206ENST00000376646 MT1LQ93083 61 aa-0.35□□□□□ -2.47
VPS13A-206ENST00000376646 KAAG1Q9UBP8 84 aa-0.35□□□□□ -2.47
VPS13A-206ENST00000376646 V9GYS6 101 aa-0.35□□□□□ -2.47
VPS13A-206ENST00000376646 A0A1B0GUL6 1792 aa-0.35□□□□□ -2.47
VPS13A-206ENST00000376646 DEFB131BA0A096LNP1 70 aa-0.36□□□□□ -2.47
VPS13A-206ENST00000376646 NDUFB1O75438 58 aa-0.36□□□□□ -2.47
VPS13A-206ENST00000376646 TNP1P09430 55 aa-0.36□□□□□ -2.47
VPS13A-206ENST00000376646 C6orf48Q9UBA6 75 aa-0.36□□□□□ -2.47
VPS13A-206ENST00000376646 MMP24-AS1A0A0U1RRL7 71 aa-0.36□□□□□ -2.47
VPS13A-206ENST00000376646 ETDCA0A1B0GVM5 59 aa-0.36□□□□□ -2.47
VPS13A-206ENST00000376646 DEFB4AO15263 64 aa-0.36□□□□□ -2.47
VPS13A-206ENST00000376646 SMIM11AP58511 58 aa-0.36□□□□□ -2.47
VPS13A-206ENST00000376646 ADIRFQ15847 76 aa-0.36□□□□□ -2.47
VPS13A-206ENST00000376646 PVALEFA0A1B0GWK0 134 aa-0.37□□□□□ -2.47
VPS13A-206ENST00000376646 A8MTW9 85 aa-0.37□□□□□ -2.47
VPS13A-206ENST00000376646 GNG2P59768 71 aa-0.37□□□□□ -2.47
VPS13A-206ENST00000376646 C18orf32Q8TCD1 76 aa-0.37□□□□□ -2.47
VPS13A-206ENST00000376646 UBL5Q9BZL1 73 aa-0.38□□□□□ -2.47
VPS13A-206ENST00000376646 KANTRA0A1W2PQU2 76 aa-0.38□□□□□ -2.47
VPS13A-206ENST00000376646 M0R1W7 72 aa-0.38□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 168 ms