RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 ANK2Q01484 3957 aa5.36□□□□□ -1.55
VPS13A-204ENST00000376634 MT1HL1P0DM35 61 aa5.36□□□□□ -1.55
VPS13A-204ENST00000376634 LCE3AQ5TA76 89 aa5.35□□□□□ -1.55
VPS13A-204ENST00000376634 HECTD4Q9Y4D8 3996 aa5.34□□□□□ -1.55
VPS13A-204ENST00000376634 KRTAP10-5P60370 271 aa5.34□□□□□ -1.55
VPS13A-204ENST00000376634 DNAH3Q8TD57 4116 aa5.31□□□□□ -1.56
VPS13A-204ENST00000376634 KRTAP8-1Q8IUC2 63 aa5.28□□□□□ -1.56
VPS13A-204ENST00000376634 VPS13BQ7Z7G8 4022 aa5.2□□□□□ -1.58
VPS13A-204ENST00000376634 DNAH1Q9P2D7 4330 aa5.15□□□□□ -1.58
VPS13A-204ENST00000376634 KMT2AQ03164 3969 aa5.15□□□□□ -1.59
VPS13A-204ENST00000376634 KRTAP4-5Q9BYR2 181 aa5.14□□□□□ -1.59
VPS13A-204ENST00000376634 DNAH2Q9P225 4427 aa5.12□□□□□ -1.59
VPS13A-204ENST00000376634 ANK3Q12955 4377 aaKnown RBP5.08□□□□□ -1.6
VPS13A-204ENST00000376634 KRTAP10-4P60372 401 aaPredicted RBP5.08□□□□□ -1.6
VPS13A-204ENST00000376634 LORP23490 312 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-204ENST00000376634 HUWE1Q7Z6Z7 4374 aaKnown RBP5□□□□□ -1.61
VPS13A-204ENST00000376634 FRAS1Q86XX4 4008 aa4.99□□□□□ -1.61
VPS13A-204ENST00000376634 DNAH6Q9C0G6 4158 aa4.98□□□□□ -1.61
VPS13A-204ENST00000376634 KRTAP10-7P60409 375 aaPredicted RBP4.97□□□□□ -1.61
VPS13A-204ENST00000376634 SPRR2FQ96RM1 72 aa4.86□□□□□ -1.63
VPS13A-204ENST00000376634 LCE3CQ5T5A8 94 aa4.8□□□□□ -1.64
VPS13A-204ENST00000376634 KRTAP19-5Q3LI72 72 aa4.79□□□□□ -1.64
VPS13A-204ENST00000376634 SPRR2GQ9BYE4 73 aa4.79□□□□□ -1.64
VPS13A-204ENST00000376634 MT1HP80294 61 aa4.78□□□□□ -1.64
VPS13A-204ENST00000376634 FLGP20930 4061 aaPredicted RBP4.78□□□□□ -1.65
VPS13A-204ENST00000376634 PRKDCP78527 4128 aaKnown RBP4.73□□□□□ -1.65
VPS13A-204ENST00000376634 MT2AP02795 61 aa4.68□□□□□ -1.66
VPS13A-204ENST00000376634 KRTAP19-4Q3LI73 84 aa4.67□□□□□ -1.66
VPS13A-204ENST00000376634 KRTAP4-1Q9BYQ7 146 aa4.66□□□□□ -1.66
VPS13A-204ENST00000376634 FAT2Q9NYQ8 4349 aa4.64□□□□□ -1.67
VPS13A-204ENST00000376634 LCE3BQ5TA77 95 aa4.58□□□□□ -1.68
VPS13A-204ENST00000376634 MT1FP04733 61 aa4.58□□□□□ -1.68
VPS13A-204ENST00000376634 PKHD1P08F94 4074 aa4.57□□□□□ -1.68
VPS13A-204ENST00000376634 SPRR2EP22531 72 aa4.56□□□□□ -1.68
VPS13A-204ENST00000376634 SPRR2BP35325 72 aa4.56□□□□□ -1.68
VPS13A-204ENST00000376634 SPRR2AP35326 72 aa4.56□□□□□ -1.68
VPS13A-204ENST00000376634 DNAH10Q8IVF4 4471 aa4.55□□□□□ -1.68
VPS13A-204ENST00000376634 VPS13DQ5THJ4 4388 aa4.49□□□□□ -1.69
VPS13A-204ENST00000376634 DNAH9Q9NYC9 4486 aa4.48□□□□□ -1.69
VPS13A-204ENST00000376634 DYNC2H1Q8NCM8 4307 aaKnown RBP4.46□□□□□ -1.69
VPS13A-204ENST00000376634 KRTAP12-4P60329 112 aa4.46□□□□□ -1.7
VPS13A-204ENST00000376634 SPRR2DP22532 72 aa4.44□□□□□ -1.7
VPS13A-204ENST00000376634 DNAH17Q9UFH2 4485 aa4.44□□□□□ -1.7
VPS13A-204ENST00000376634 LCE2BO14633 110 aa4.43□□□□□ -1.7
VPS13A-204ENST00000376634 DNAH11Q96DT5 4516 aa4.41□□□□□ -1.7
VPS13A-204ENST00000376634 PKHD1L1Q86WI1 4243 aa4.38□□□□□ -1.71
VPS13A-204ENST00000376634 STARD9Q9P2P6 4700 aa4.36□□□□□ -1.71
VPS13A-204ENST00000376634 MT1GP13640 62 aa4.34□□□□□ -1.71
VPS13A-204ENST00000376634 KRTAP19-8Q3LI54 63 aa4.27□□□□□ -1.73
VPS13A-204ENST00000376634 MT1XP80297 61 aa4.27□□□□□ -1.73
VPS13A-204ENST00000376634 DNAH8Q96JB1 4490 aa4.26□□□□□ -1.73
VPS13A-204ENST00000376634 LCE3DQ9BYE3 92 aa4.26□□□□□ -1.73
VPS13A-204ENST00000376634 DNAH5Q8TE73 4624 aa4.21□□□□□ -1.74
VPS13A-204ENST00000376634 KRTAP19-1Q8IUB9 90 aa4.2□□□□□ -1.74
VPS13A-204ENST00000376634 LCE3EQ5T5B0 92 aa4.17□□□□□ -1.74
VPS13A-204ENST00000376634 PLECQ15149 4684 aaKnown RBP4.17□□□□□ -1.74
VPS13A-204ENST00000376634 LRP1Q07954 4544 aaKnown RBP4.16□□□□□ -1.74
VPS13A-204ENST00000376634 LCE2CQ5TA81 110 aa4.15□□□□□ -1.74
VPS13A-204ENST00000376634 PKD1P98161 4303 aa4.12□□□□□ -1.75
VPS13A-204ENST00000376634 SPRR5A0A1B0GTR4 108 aa4.07□□□□□ -1.76
VPS13A-204ENST00000376634 LCE2DQ5TA82 110 aaPredicted RBP4.04□□□□□ -1.76
VPS13A-204ENST00000376634 KRTAP4-8A0A0G2JLE6 195 aa4.03□□□□□ -1.76
VPS13A-204ENST00000376634 KRTAP4-8Q9BYQ9 185 aa4.03□□□□□ -1.76
VPS13A-204ENST00000376634 MT1BP07438 61 aa4.03□□□□□ -1.77
VPS13A-204ENST00000376634 KRTAP19-3Q7Z4W3 81 aa4.02□□□□□ -1.77
VPS13A-204ENST00000376634 APOBP04114 4563 aaKnown RBP4.01□□□□□ -1.77
VPS13A-204ENST00000376634 KRTAP9-8Q9BYQ0 159 aa4□□□□□ -1.77
VPS13A-204ENST00000376634 LRP1BQ9NZR2 4599 aa4□□□□□ -1.77
VPS13A-204ENST00000376634 MT1LQ93083 61 aa3.97□□□□□ -1.77
VPS13A-204ENST00000376634 HSPG2P98160 4391 aa3.96□□□□□ -1.77
VPS13A-204ENST00000376634 MT4P47944 62 aa3.96□□□□□ -1.78
VPS13A-204ENST00000376634 PRM1P04553 51 aa3.95□□□□□ -1.78
VPS13A-204ENST00000376634 KRTAP9-3Q9BYQ3 159 aa3.94□□□□□ -1.78
VPS13A-204ENST00000376634 DYNC1H1Q14204 4646 aaKnown RBP3.94□□□□□ -1.78
VPS13A-204ENST00000376634 TNXBP22105 4242 aa3.93□□□□□ -1.78
VPS13A-204ENST00000376634 FAT1Q14517 4588 aa3.92□□□□□ -1.78
VPS13A-204ENST00000376634 DNHD1Q96M86 4753 aa3.9□□□□□ -1.78
VPS13A-204ENST00000376634 MT3P25713 68 aa3.88□□□□□ -1.79
VPS13A-204ENST00000376634 MT1EP04732 61 aa3.87□□□□□ -1.79
VPS13A-204ENST00000376634 SACSQ9NZJ4 4579 aa3.86□□□□□ -1.79
VPS13A-204ENST00000376634 LCE1DQ5T752 114 aa3.85□□□□□ -1.79
VPS13A-204ENST00000376634 LCE1BQ5T7P3 118 aa3.84□□□□□ -1.8
VPS13A-204ENST00000376634 KRTAP4-7Q9BYR0 210 aa3.8□□□□□ -1.8
VPS13A-204ENST00000376634 MT1MQ8N339 61 aa3.8□□□□□ -1.8
VPS13A-204ENST00000376634 FAT3Q8TDW7 4589 aa3.79□□□□□ -1.8
VPS13A-204ENST00000376634 MYCBP2O75592 4640 aa3.77□□□□□ -1.81
VPS13A-204ENST00000376634 KRTAP17-1Q9BYP8 105 aa3.72□□□□□ -1.81
VPS13A-204ENST00000376634 LOC100996750A0A140TA64 210 aa3.71□□□□□ -1.82
VPS13A-204ENST00000376634 KRTAP9-2Q9BYQ4 174 aa3.61□□□□□ -1.83
VPS13A-204ENST00000376634 RYR1P21817 5038 aa3.6□□□□□ -1.83
VPS13A-204ENST00000376634 LCE5AQ5TCM9 118 aa3.59□□□□□ -1.83
VPS13A-204ENST00000376634 KRTAP19-6Q3LI70 58 aa3.59□□□□□ -1.84
VPS13A-204ENST00000376634 MUC17Q685J3 4493 aa3.58□□□□□ -1.84
VPS13A-204ENST00000376634 KRTAP4-3Q9BYR4 195 aa3.57□□□□□ -1.84
VPS13A-204ENST00000376634 RYR3Q15413 4870 aa3.57□□□□□ -1.84
VPS13A-204ENST00000376634 LPAP08519 4548 aa3.55□□□□□ -1.84
VPS13A-204ENST00000376634 KRTAP2-3P0C7H8 128 aa3.54□□□□□ -1.84
VPS13A-204ENST00000376634 KRTAP2-4Q9BYR9 128 aa3.54□□□□□ -1.84
VPS13A-204ENST00000376634 KRTAP2-1Q9BYU5 128 aa3.54□□□□□ -1.84
VPS13A-204ENST00000376634 RYR2Q92736 4967 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms