RNA–Protein interactions for RNA: ENST00000371429.3

NDC1-201, Transcript of NDC1 transmembrane nucleoporin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDC1, Length 5,134 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDC1-201ENST00000371429 CSMD3Q7Z407 3707 aa6.36□□□□□ -1.39
NDC1-201ENST00000371429 CRCT1Q9UGL9 99 aa6.35□□□□□ -1.39
NDC1-201ENST00000371429 DNAH11Q96DT5 4516 aa6.31□□□□□ -1.4
NDC1-201ENST00000371429 LORP23490 312 aaPredicted RBP6.31□□□□□ -1.4
NDC1-201ENST00000371429 AKAP9Q99996 3911 aa6.3□□□□□ -1.4
NDC1-201ENST00000371429 KRTAP12-3P60328 96 aa6.29□□□□□ -1.4
NDC1-201ENST00000371429 KRTAP4-1Q9BYQ7 146 aa6.25□□□□□ -1.41
NDC1-201ENST00000371429 DNAH1Q9P2D7 4330 aa6.23□□□□□ -1.41
NDC1-201ENST00000371429 DNAH10Q8IVF4 4471 aa6.21□□□□□ -1.42
NDC1-201ENST00000371429 RYR1P21817 5038 aa6.2□□□□□ -1.42
NDC1-201ENST00000371429 LCE3AQ5TA76 89 aa6.19□□□□□ -1.42
NDC1-201ENST00000371429 MT1HP80294 61 aa6.18□□□□□ -1.42
NDC1-201ENST00000371429 DYNC1H1Q14204 4646 aaKnown RBP6.18□□□□□ -1.42
NDC1-201ENST00000371429 KRTAP8-1Q8IUC2 63 aa6.17□□□□□ -1.42
NDC1-201ENST00000371429 KRTAP23-1A1A580 65 aa6.13□□□□□ -1.43
NDC1-201ENST00000371429 FAT1Q14517 4588 aa6.12□□□□□ -1.43
NDC1-201ENST00000371429 VPS13DQ5THJ4 4388 aa6.1□□□□□ -1.43
NDC1-201ENST00000371429 LRP1BQ9NZR2 4599 aa6.09□□□□□ -1.43
NDC1-201ENST00000371429 MT2AP02795 61 aa6.08□□□□□ -1.44
NDC1-201ENST00000371429 DNAH17Q9UFH2 4485 aa6.04□□□□□ -1.44
NDC1-201ENST00000371429 STARD9Q9P2P6 4700 aa6.01□□□□□ -1.45
NDC1-201ENST00000371429 SACSQ9NZJ4 4579 aa6□□□□□ -1.45
NDC1-201ENST00000371429 SPRR2GQ9BYE4 73 aa5.94□□□□□ -1.46
NDC1-201ENST00000371429 MT1FP04733 61 aa5.94□□□□□ -1.46
NDC1-201ENST00000371429 KIAA1109Q2LD37 5005 aa5.94□□□□□ -1.46
NDC1-201ENST00000371429 PRKDCP78527 4128 aaKnown RBP5.93□□□□□ -1.46
NDC1-201ENST00000371429 FAT2Q9NYQ8 4349 aa5.93□□□□□ -1.46
NDC1-201ENST00000371429 DNAH2Q9P225 4427 aa5.92□□□□□ -1.46
NDC1-201ENST00000371429 DNAH8Q96JB1 4490 aa5.9□□□□□ -1.46
NDC1-201ENST00000371429 INE1O15225 51 aa5.89□□□□□ -1.47
NDC1-201ENST00000371429 DYNC2H1Q8NCM8 4307 aaKnown RBP5.86□□□□□ -1.47
NDC1-201ENST00000371429 RYR3Q15413 4870 aa5.86□□□□□ -1.47
NDC1-201ENST00000371429 KRTAP17-1Q9BYP8 105 aa5.8□□□□□ -1.48
NDC1-201ENST00000371429 APOBP04114 4563 aaKnown RBP5.8□□□□□ -1.48
NDC1-201ENST00000371429 SPRR2FQ96RM1 72 aa5.79□□□□□ -1.48
NDC1-201ENST00000371429 KRTAP10-5P60370 271 aa5.77□□□□□ -1.49
NDC1-201ENST00000371429 ANK2Q01484 3957 aa5.77□□□□□ -1.49
NDC1-201ENST00000371429 VPS13BQ7Z7G8 4022 aa5.75□□□□□ -1.49
NDC1-201ENST00000371429 LYSTQ99698 3801 aa5.7□□□□□ -1.5
NDC1-201ENST00000371429 DNAH3Q8TD57 4116 aa5.7□□□□□ -1.5
NDC1-201ENST00000371429 KMT2AQ03164 3969 aa5.7□□□□□ -1.5
NDC1-201ENST00000371429 MYCBP2O75592 4640 aa5.69□□□□□ -1.5
NDC1-201ENST00000371429 KRTAP10-7P60409 375 aaPredicted RBP5.65□□□□□ -1.5
NDC1-201ENST00000371429 RYR2Q92736 4967 aa5.65□□□□□ -1.51
NDC1-201ENST00000371429 KRTAP19-5Q3LI72 72 aa5.64□□□□□ -1.51
NDC1-201ENST00000371429 HERC2O95714 4834 aa5.63□□□□□ -1.51
NDC1-201ENST00000371429 BIRC6Q9NR09 4857 aa5.59□□□□□ -1.52
NDC1-201ENST00000371429 FAT3Q8TDW7 4589 aa5.58□□□□□ -1.52
NDC1-201ENST00000371429 KRTAP19-1Q8IUB9 90 aa5.57□□□□□ -1.52
NDC1-201ENST00000371429 LRP1Q07954 4544 aaKnown RBP5.56□□□□□ -1.52
NDC1-201ENST00000371429 KRTAP19-8Q3LI54 63 aa5.56□□□□□ -1.52
NDC1-201ENST00000371429 PCLOQ9Y6V0 5065 aa5.49□□□□□ -1.53
NDC1-201ENST00000371429 LCE3CQ5T5A8 94 aa5.47□□□□□ -1.53
NDC1-201ENST00000371429 KRTAP9-8Q9BYQ0 159 aa5.44□□□□□ -1.54
NDC1-201ENST00000371429 SPRR2EP22531 72 aa5.44□□□□□ -1.54
NDC1-201ENST00000371429 SPRR2BP35325 72 aa5.44□□□□□ -1.54
NDC1-201ENST00000371429 SPRR2AP35326 72 aa5.44□□□□□ -1.54
NDC1-201ENST00000371429 KRTAP19-4Q3LI73 84 aa5.43□□□□□ -1.54
NDC1-201ENST00000371429 DNAH6Q9C0G6 4158 aa5.41□□□□□ -1.54
NDC1-201ENST00000371429 MT1BP07438 61 aa5.38□□□□□ -1.55
NDC1-201ENST00000371429 LCE2CQ5TA81 110 aa5.38□□□□□ -1.55
NDC1-201ENST00000371429 CMYA5Q8N3K9 4069 aa5.38□□□□□ -1.55
NDC1-201ENST00000371429 MT1XP80297 61 aa5.38□□□□□ -1.55
NDC1-201ENST00000371429 HYDINQ4G0P3 5121 aa5.37□□□□□ -1.55
NDC1-201ENST00000371429 LRP2P98164 4655 aa5.36□□□□□ -1.55
NDC1-201ENST00000371429 DNAH7Q8WXX0 4024 aa5.36□□□□□ -1.55
NDC1-201ENST00000371429 HERC1Q15751 4861 aa5.35□□□□□ -1.55
NDC1-201ENST00000371429 PKD1P98161 4303 aa5.33□□□□□ -1.56
NDC1-201ENST00000371429 KRTAP9-3Q9BYQ3 159 aa5.32□□□□□ -1.56
NDC1-201ENST00000371429 HSPG2P98160 4391 aa5.3□□□□□ -1.56
NDC1-201ENST00000371429 SPRR2DP22532 72 aa5.26□□□□□ -1.57
NDC1-201ENST00000371429 EPPK1P58107 5090 aaKnown RBP5.25□□□□□ -1.57
NDC1-201ENST00000371429 LCE2BO14633 110 aa5.23□□□□□ -1.57
NDC1-201ENST00000371429 HECTD4Q9Y4D8 3996 aa5.23□□□□□ -1.57
NDC1-201ENST00000371429 KRTAP4-8A0A0G2JLE6 195 aa5.22□□□□□ -1.57
NDC1-201ENST00000371429 KRTAP4-8Q9BYQ9 185 aa5.22□□□□□ -1.57
NDC1-201ENST00000371429 FRAS1Q86XX4 4008 aa5.19□□□□□ -1.58
NDC1-201ENST00000371429 MT1GP13640 62 aa5.16□□□□□ -1.58
NDC1-201ENST00000371429 PKHD1L1Q86WI1 4243 aa5.15□□□□□ -1.58
NDC1-201ENST00000371429 PKHD1P08F94 4074 aa5.15□□□□□ -1.59
NDC1-201ENST00000371429 KRTAP19-2Q3LHN2 52 aa5.11□□□□□ -1.59
NDC1-201ENST00000371429 KRTAP12-4P60329 112 aa5.1□□□□□ -1.59
NDC1-201ENST00000371429 KMT2CQ8NEZ4 4911 aaKnown RBP5.1□□□□□ -1.59
NDC1-201ENST00000371429 LCE3BQ5TA77 95 aa5.1□□□□□ -1.59
NDC1-201ENST00000371429 ABCA13Q86UQ4 5058 aa5.07□□□□□ -1.6
NDC1-201ENST00000371429 LPAP08519 4548 aa5.05□□□□□ -1.6
NDC1-201ENST00000371429 KRTAP9-2Q9BYQ4 174 aa4.99□□□□□ -1.61
NDC1-201ENST00000371429 UBR4Q5T4S7 5183 aa4.98□□□□□ -1.61
NDC1-201ENST00000371429 KRTAP19-3Q7Z4W3 81 aa4.97□□□□□ -1.61
NDC1-201ENST00000371429 MUC17Q685J3 4493 aa4.92□□□□□ -1.62
NDC1-201ENST00000371429 FSIP2Q5CZC0 6907 aa4.9□□□□□ -1.62
NDC1-201ENST00000371429 KRTAP19-6Q3LI70 58 aa4.89□□□□□ -1.63
NDC1-201ENST00000371429 MT1LQ93083 61 aa4.87□□□□□ -1.63
NDC1-201ENST00000371429 MT1EP04732 61 aa4.86□□□□□ -1.63
NDC1-201ENST00000371429 SYNE1Q8NF91 8797 aaKnown RBP4.85□□□□□ -1.63
NDC1-201ENST00000371429 LCE2AQ5TA79 106 aaPredicted RBP4.84□□□□□ -1.63
NDC1-201ENST00000371429 FLGP20930 4061 aaPredicted RBP4.84□□□□□ -1.64
NDC1-201ENST00000371429 LCE2DQ5TA82 110 aaPredicted RBP4.82□□□□□ -1.64
NDC1-201ENST00000371429 KRTAP4-7Q9BYR0 210 aa4.82□□□□□ -1.64
NDC1-201ENST00000371429 FAT4Q6V0I7 4981 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms