RNA–Protein interactions for RNA: ENST00000361138.6

SMC5-201, Transcript of structural maintenance of chromosomes 5, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC5, Length 5,980 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-201ENST00000361138 DNAH3Q8TD57 4116 aa6.21□□□□□ -1.42
SMC5-201ENST00000361138 COL7A1Q02388 2944 aa6.17□□□□□ -1.42
SMC5-201ENST00000361138 KRTAP23-1A1A580 65 aa6.16□□□□□ -1.42
SMC5-201ENST00000361138 ANK2Q01484 3957 aa6.15□□□□□ -1.42
SMC5-201ENST00000361138 DNAH17Q9UFH2 4485 aa6.12□□□□□ -1.43
SMC5-201ENST00000361138 PLECQ15149 4684 aaKnown RBP6.11□□□□□ -1.43
SMC5-201ENST00000361138 LORP23490 312 aaPredicted RBP6.09□□□□□ -1.43
SMC5-201ENST00000361138 DNHD1Q96M86 4753 aa6.06□□□□□ -1.44
SMC5-201ENST00000361138 CMYA5Q8N3K9 4069 aa6.06□□□□□ -1.44
SMC5-201ENST00000361138 DNAH8Q96JB1 4490 aa6.06□□□□□ -1.44
SMC5-201ENST00000361138 VPS13DQ5THJ4 4388 aa6.05□□□□□ -1.44
SMC5-201ENST00000361138 DNAH2Q9P225 4427 aa6.03□□□□□ -1.44
SMC5-201ENST00000361138 DNAH11Q96DT5 4516 aa6□□□□□ -1.45
SMC5-201ENST00000361138 PRKDCP78527 4128 aaKnown RBP6□□□□□ -1.45
SMC5-201ENST00000361138 KRTAP10-12P60413 245 aa6□□□□□ -1.45
SMC5-201ENST00000361138 LCE3AQ5TA76 89 aa5.99□□□□□ -1.45
SMC5-201ENST00000361138 STARD9Q9P2P6 4700 aa5.98□□□□□ -1.45
SMC5-201ENST00000361138 DNAH5Q8TE73 4624 aa5.98□□□□□ -1.45
SMC5-201ENST00000361138 KRTAP12-3P60328 96 aa5.92□□□□□ -1.46
SMC5-201ENST00000361138 FRAS1Q86XX4 4008 aa5.9□□□□□ -1.47
SMC5-201ENST00000361138 KMT2AQ03164 3969 aa5.83□□□□□ -1.48
SMC5-201ENST00000361138 DYNC2H1Q8NCM8 4307 aaKnown RBP5.82□□□□□ -1.48
SMC5-201ENST00000361138 FAT2Q9NYQ8 4349 aa5.81□□□□□ -1.48
SMC5-201ENST00000361138 SACSQ9NZJ4 4579 aa5.81□□□□□ -1.48
SMC5-201ENST00000361138 LRP1BQ9NZR2 4599 aa5.81□□□□□ -1.48
SMC5-201ENST00000361138 DYNC1H1Q14204 4646 aaKnown RBP5.8□□□□□ -1.48
SMC5-201ENST00000361138 DNAH6Q9C0G6 4158 aa5.76□□□□□ -1.49
SMC5-201ENST00000361138 VPS13BQ7Z7G8 4022 aa5.72□□□□□ -1.49
SMC5-201ENST00000361138 HECTD4Q9Y4D8 3996 aa5.7□□□□□ -1.5
SMC5-201ENST00000361138 KRTAP4-1Q9BYQ7 146 aa5.67□□□□□ -1.5
SMC5-201ENST00000361138 DNAH7Q8WXX0 4024 aa5.66□□□□□ -1.5
SMC5-201ENST00000361138 LYSTQ99698 3801 aa5.64□□□□□ -1.51
SMC5-201ENST00000361138 FAT1Q14517 4588 aa5.64□□□□□ -1.51
SMC5-201ENST00000361138 KRTAP17-1Q9BYP8 105 aa5.6□□□□□ -1.51
SMC5-201ENST00000361138 CRCT1Q9UGL9 99 aa5.58□□□□□ -1.52
SMC5-201ENST00000361138 RYR1P21817 5038 aa5.54□□□□□ -1.52
SMC5-201ENST00000361138 SPRR2GQ9BYE4 73 aa5.52□□□□□ -1.53
SMC5-201ENST00000361138 MT1HP80294 61 aa5.48□□□□□ -1.53
SMC5-201ENST00000361138 APOBP04114 4563 aaKnown RBP5.47□□□□□ -1.53
SMC5-201ENST00000361138 RYR2Q92736 4967 aa5.46□□□□□ -1.53
SMC5-201ENST00000361138 HYDINQ4G0P3 5121 aa5.44□□□□□ -1.54
SMC5-201ENST00000361138 RYR3Q15413 4870 aa5.42□□□□□ -1.54
SMC5-201ENST00000361138 FAT3Q8TDW7 4589 aa5.39□□□□□ -1.55
SMC5-201ENST00000361138 HSPG2P98160 4391 aa5.38□□□□□ -1.55
SMC5-201ENST00000361138 KRTAP10-5P60370 271 aa5.37□□□□□ -1.55
SMC5-201ENST00000361138 MT2AP02795 61 aa5.37□□□□□ -1.55
SMC5-201ENST00000361138 KRTAP8-1Q8IUC2 63 aa5.35□□□□□ -1.55
SMC5-201ENST00000361138 SPRR5A0A1B0GTR4 108 aa5.32□□□□□ -1.56
SMC5-201ENST00000361138 LCE3CQ5T5A8 94 aa5.32□□□□□ -1.56
SMC5-201ENST00000361138 KIAA1109Q2LD37 5005 aa5.3□□□□□ -1.56
SMC5-201ENST00000361138 MT1FP04733 61 aa5.3□□□□□ -1.56
SMC5-201ENST00000361138 KRTAP19-5Q3LI72 72 aa5.3□□□□□ -1.56
SMC5-201ENST00000361138 BIRC6Q9NR09 4857 aa5.27□□□□□ -1.57
SMC5-201ENST00000361138 PKHD1L1Q86WI1 4243 aa5.27□□□□□ -1.57
SMC5-201ENST00000361138 PKHD1P08F94 4074 aa5.27□□□□□ -1.57
SMC5-201ENST00000361138 PKD1P98161 4303 aa5.26□□□□□ -1.57
SMC5-201ENST00000361138 LRP1Q07954 4544 aaKnown RBP5.26□□□□□ -1.57
SMC5-201ENST00000361138 KRTAP19-1Q8IUB9 90 aa5.15□□□□□ -1.58
SMC5-201ENST00000361138 MYCBP2O75592 4640 aa5.14□□□□□ -1.59
SMC5-201ENST00000361138 KRTAP10-7P60409 375 aaPredicted RBP5.13□□□□□ -1.59
SMC5-201ENST00000361138 HERC2O95714 4834 aa5.12□□□□□ -1.59
SMC5-201ENST00000361138 KMT2CQ8NEZ4 4911 aaKnown RBP5.11□□□□□ -1.59
SMC5-201ENST00000361138 KRTAP19-8Q3LI54 63 aa5.1□□□□□ -1.59
SMC5-201ENST00000361138 TNXBP22105 4242 aa5.08□□□□□ -1.6
SMC5-201ENST00000361138 MT1XP80297 61 aa5.06□□□□□ -1.6
SMC5-201ENST00000361138 KRTAP19-4Q3LI73 84 aa5.05□□□□□ -1.6
SMC5-201ENST00000361138 LPAP08519 4548 aa5.04□□□□□ -1.6
SMC5-201ENST00000361138 EPPK1P58107 5090 aaKnown RBP4.98□□□□□ -1.61
SMC5-201ENST00000361138 MT1BP07438 61 aa4.94□□□□□ -1.62
SMC5-201ENST00000361138 LCE2CQ5TA81 110 aa4.92□□□□□ -1.62
SMC5-201ENST00000361138 HERC1Q15751 4861 aa4.91□□□□□ -1.62
SMC5-201ENST00000361138 SPRR2FQ96RM1 72 aa4.89□□□□□ -1.63
SMC5-201ENST00000361138 KRTAP9-8Q9BYQ0 159 aa4.88□□□□□ -1.63
SMC5-201ENST00000361138 LRP2P98164 4655 aa4.87□□□□□ -1.63
SMC5-201ENST00000361138 KRTAP12-4P60329 112 aa4.81□□□□□ -1.64
SMC5-201ENST00000361138 KRTAP19-2Q3LHN2 52 aa4.79□□□□□ -1.64
SMC5-201ENST00000361138 PCLOQ9Y6V0 5065 aa4.79□□□□□ -1.64
SMC5-201ENST00000361138 MUC17Q685J3 4493 aa4.79□□□□□ -1.64
SMC5-201ENST00000361138 ABCA13Q86UQ4 5058 aa4.79□□□□□ -1.64
SMC5-201ENST00000361138 KRTAP9-3Q9BYQ3 159 aa4.76□□□□□ -1.65
SMC5-201ENST00000361138 MT1GP13640 62 aa4.74□□□□□ -1.65
SMC5-201ENST00000361138 KRTAP4-8A0A0G2JLE6 195 aa4.74□□□□□ -1.65
SMC5-201ENST00000361138 KRTAP4-8Q9BYQ9 185 aa4.74□□□□□ -1.65
SMC5-201ENST00000361138 LCE3BQ5TA77 95 aa4.73□□□□□ -1.65
SMC5-201ENST00000361138 FLGP20930 4061 aaPredicted RBP4.69□□□□□ -1.66
SMC5-201ENST00000361138 SPRR2EP22531 72 aa4.68□□□□□ -1.66
SMC5-201ENST00000361138 SPRR2BP35325 72 aa4.68□□□□□ -1.66
SMC5-201ENST00000361138 SPRR2AP35326 72 aa4.68□□□□□ -1.66
SMC5-201ENST00000361138 KRTAP4-7Q9BYR0 210 aa4.6□□□□□ -1.67
SMC5-201ENST00000361138 LCE2BO14633 110 aa4.6□□□□□ -1.67
SMC5-201ENST00000361138 KRTAP9-2Q9BYQ4 174 aa4.57□□□□□ -1.68
SMC5-201ENST00000361138 MT1LQ93083 61 aa4.55□□□□□ -1.68
SMC5-201ENST00000361138 LCE3DQ9BYE3 92 aa4.52□□□□□ -1.69
SMC5-201ENST00000361138 SPRR2DP22532 72 aa4.52□□□□□ -1.69
SMC5-201ENST00000361138 MT1EP04732 61 aa4.48□□□□□ -1.69
SMC5-201ENST00000361138 LCE2AQ5TA79 106 aaPredicted RBP4.48□□□□□ -1.69
SMC5-201ENST00000361138 LCE3EQ5T5B0 92 aa4.47□□□□□ -1.69
SMC5-201ENST00000361138 FAT4Q6V0I7 4981 aa4.42□□□□□ -1.7
SMC5-201ENST00000361138 RNF213Q63HN8 5207 aa4.41□□□□□ -1.7
SMC5-201ENST00000361138 LCE2DQ5TA82 110 aaPredicted RBP4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms