RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 KRTAP2-2Q9BYT5 123 aa6.01□□□□□ -1.45
VPS29-201ENST00000360579 KRTAP2-1Q9BYU5 128 aa6.01□□□□□ -1.45
VPS29-201ENST00000360579 CRIPTQ9P021 101 aa6.01□□□□□ -1.45
VPS29-201ENST00000360579 HCG22E2RYF7 251 aa6□□□□□ -1.45
VPS29-201ENST00000360579 CXCL6P80162 114 aa6□□□□□ -1.45
VPS29-201ENST00000360579 UQCR10Q9UDW1 63 aa5.99□□□□□ -1.45
VPS29-201ENST00000360579 BPY2O14599 106 aa5.98□□□□□ -1.45
VPS29-201ENST00000360579 CASC2Q6XLA1 102 aa5.98□□□□□ -1.45
VPS29-201ENST00000360579 C1orf64Q8NEQ6 169 aa5.98□□□□□ -1.45
VPS29-201ENST00000360579 PYY3Q5JQD4 70 aa5.92□□□□□ -1.46
VPS29-201ENST00000360579 PRO2289Q9P1D8 64 aa5.92□□□□□ -1.46
VPS29-201ENST00000360579 LCE1AQ5T7P2 110 aa5.9□□□□□ -1.46
VPS29-201ENST00000360579 Q8N9L7 120 aa5.9□□□□□ -1.46
VPS29-201ENST00000360579 KRTAP8-1Q8IUC2 63 aa5.89□□□□□ -1.47
VPS29-201ENST00000360579 NAA38Q9BRA0 125 aaKnown RBP5.88□□□□□ -1.47
VPS29-201ENST00000360579 SPRR2DP22532 72 aa5.86□□□□□ -1.47
VPS29-201ENST00000360579 M0R143 59 aa5.83□□□□□ -1.48
VPS29-201ENST00000360579 GPR98Q8WXG9 6306 aa5.83□□□□□ -1.48
VPS29-201ENST00000360579 TMA7Q9Y2S6 64 aaKnown RBP5.81□□□□□ -1.48
VPS29-201ENST00000360579 MT1XP80297 61 aa5.8□□□□□ -1.48
VPS29-201ENST00000360579 H3BT86 120 aa5.79□□□□□ -1.48
VPS29-201ENST00000360579 KRTAP12-2P59991 146 aa5.78□□□□□ -1.48
VPS29-201ENST00000360579 TP53AIP1Q9HCN2 124 aa5.78□□□□□ -1.48
VPS29-201ENST00000360579 TSTD3H0UI37 97 aa5.77□□□□□ -1.49
VPS29-201ENST00000360579 H0YAA0 97 aa5.77□□□□□ -1.49
VPS29-201ENST00000360579 A8MUN3 132 aa5.76□□□□□ -1.49
VPS29-201ENST00000360579 PLAC4Q8WY50 150 aa5.75□□□□□ -1.49
VPS29-201ENST00000360579 A0A087WVE0 104 aa5.72□□□□□ -1.49
VPS29-201ENST00000360579 NDUFC1O43677 76 aa5.71□□□□□ -1.5
VPS29-201ENST00000360579 UBL5Q9BZL1 73 aa5.7□□□□□ -1.5
VPS29-201ENST00000360579 CYP4F30PQ9H0H9 118 aa5.7□□□□□ -1.5
VPS29-201ENST00000360579 ADM2Q7Z4H4 148 aa5.67□□□□□ -1.5
VPS29-201ENST00000360579 LOC101927531A0A1B0GV80 90 aa5.62□□□□□ -1.51
VPS29-201ENST00000360579 DSTQ03001 7570 aaKnown RBP5.6□□□□□ -1.51
VPS29-201ENST00000360579 A0A1W2PPM0 123 aa5.59□□□□□ -1.51
VPS29-201ENST00000360579 BATFQ16520 125 aa5.59□□□□□ -1.51
VPS29-201ENST00000360579 R4GN34 69 aa5.59□□□□□ -1.51
VPS29-201ENST00000360579 TRAV22A0A0B4J277 110 aa5.58□□□□□ -1.52
VPS29-201ENST00000360579 K7EP34 96 aa5.57□□□□□ -1.52
VPS29-201ENST00000360579 ACYP1P07311 99 aa5.55□□□□□ -1.52
VPS29-201ENST00000360579 C20orf197Q8N268 126 aa5.53□□□□□ -1.52
VPS29-201ENST00000360579 KRTAP10-12P60413 245 aa5.52□□□□□ -1.53
VPS29-201ENST00000360579 TAX1BP3O14907 124 aa5.51□□□□□ -1.53
VPS29-201ENST00000360579 KRTAP10-7P60409 375 aaPredicted RBP5.51□□□□□ -1.53
VPS29-201ENST00000360579 M0QZ58 72 aa5.5□□□□□ -1.53
VPS29-201ENST00000360579 SPCS1Q9Y6A9 102 aa5.49□□□□□ -1.53
VPS29-201ENST00000360579 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.48□□□□□ -1.53
VPS29-201ENST00000360579 ATOX1O00244 68 aa5.47□□□□□ -1.53
VPS29-201ENST00000360579 P0C880 135 aa5.45□□□□□ -1.54
VPS29-201ENST00000360579 LINC01554Q52M75 96 aa5.44□□□□□ -1.54
VPS29-201ENST00000360579 H0Y9P7 68 aa5.42□□□□□ -1.54
VPS29-201ENST00000360579 UQCRQO14949 82 aa5.42□□□□□ -1.54
VPS29-201ENST00000360579 SMIM6P0DI80 62 aa5.42□□□□□ -1.54
VPS29-201ENST00000360579 PRO0461Q9UI25 63 aa5.4□□□□□ -1.54
VPS29-201ENST00000360579 HMCN1Q96RW7 5635 aa5.32□□□□□ -1.56
VPS29-201ENST00000360579 LINC00208Q96KT6 92 aa5.29□□□□□ -1.56
VPS29-201ENST00000360579 MT-ATP8P03928 68 aa5.28□□□□□ -1.56
VPS29-201ENST00000360579 HIST1H4AP62805 103 aaKnown RBP5.27□□□□□ -1.57
VPS29-201ENST00000360579 ATP5EP2Q5VTU8 51 aa5.26□□□□□ -1.57
VPS29-201ENST00000360579 AHNAK2Q8IVF2 5795 aa5.24□□□□□ -1.57
VPS29-201ENST00000360579 MP68P56378 58 aa5.23□□□□□ -1.57
VPS29-201ENST00000360579 ETDBQ3ZM63 59 aa5.23□□□□□ -1.57
VPS29-201ENST00000360579 KRTAP19-3Q7Z4W3 81 aa5.23□□□□□ -1.57
VPS29-201ENST00000360579 F8W1H4 67 aa5.22□□□□□ -1.57
VPS29-201ENST00000360579 COL5A1-AS1Q5SY13 56 aa5.22□□□□□ -1.57
VPS29-201ENST00000360579 KRTAP5-11Q6L8G4 156 aa5.22□□□□□ -1.57
VPS29-201ENST00000360579 DMAC1Q96GE9 116 aa5.2□□□□□ -1.58
VPS29-201ENST00000360579 KRTAP19-7Q3SYF9 63 aa5.19□□□□□ -1.58
VPS29-201ENST00000360579 GTF2H5Q6ZYL4 71 aa5.19□□□□□ -1.58
VPS29-201ENST00000360579 MT1EP04732 61 aa5.18□□□□□ -1.58
VPS29-201ENST00000360579 CYSTM1Q9H1C7 97 aa5.16□□□□□ -1.58
VPS29-201ENST00000360579 MT4P47944 62 aa5.14□□□□□ -1.59
VPS29-201ENST00000360579 FAM240AA0A1B0GVK7 77 aa5.12□□□□□ -1.59
VPS29-201ENST00000360579 OCR1Q9BZK8 76 aa5.12□□□□□ -1.59
VPS29-201ENST00000360579 TRAV7A0A075B6U4 112 aa5.1□□□□□ -1.59
VPS29-201ENST00000360579 H3BPC8 53 aa5.1□□□□□ -1.59
VPS29-201ENST00000360579 KRTAP5-10Q6L8G5 202 aa5.09□□□□□ -1.59
VPS29-201ENST00000360579 MT1GP13640 62 aa5.08□□□□□ -1.6
VPS29-201ENST00000360579 CAMK2N1Q7Z7J9 78 aa5.08□□□□□ -1.6
VPS29-201ENST00000360579 PP632Q6XCG6 107 aa5.07□□□□□ -1.6
VPS29-201ENST00000360579 SPTSSBQ8NFR3 76 aa5.07□□□□□ -1.6
VPS29-201ENST00000360579 LINC00643Q86TS7 51 aa5.03□□□□□ -1.6
VPS29-201ENST00000360579 ACYP2P14621 99 aa5.01□□□□□ -1.61
VPS29-201ENST00000360579 LCE1EQ5T753 118 aa4.97□□□□□ -1.61
VPS29-201ENST00000360579 KRTAP5-4Q6L8H1 288 aa4.97□□□□□ -1.61
VPS29-201ENST00000360579 LOC105371267A0A1B0GV96 52 aa4.96□□□□□ -1.62
VPS29-201ENST00000360579 KRTAP5-7Q6L8G8 165 aa4.96□□□□□ -1.62
VPS29-201ENST00000360579 KRTAP19-5Q3LI72 72 aa4.95□□□□□ -1.62
VPS29-201ENST00000360579 MT1MQ8N339 61 aa4.95□□□□□ -1.62
VPS29-201ENST00000360579 A0A0D9SG42 100 aa4.93□□□□□ -1.62
VPS29-201ENST00000360579 CHKB-CPT1BH3BT56 60 aa4.92□□□□□ -1.62
VPS29-201ENST00000360579 MT3P25713 68 aa4.91□□□□□ -1.62
VPS29-201ENST00000360579 KRTAP13-4Q3LI77 160 aa4.91□□□□□ -1.62
VPS29-201ENST00000360579 SCGB1A1P11684 91 aa4.88□□□□□ -1.63
VPS29-201ENST00000360579 MT1LQ93083 61 aa4.87□□□□□ -1.63
VPS29-201ENST00000360579 KRTAP4-3Q9BYR4 195 aa4.81□□□□□ -1.64
VPS29-201ENST00000360579 SPRR5A0A1B0GTR4 108 aa4.75□□□□□ -1.65
VPS29-201ENST00000360579 KRTAP20-2Q3LI61 65 aa4.72□□□□□ -1.65
VPS29-201ENST00000360579 SPINT4Q6UDR6 99 aa4.72□□□□□ -1.65
VPS29-201ENST00000360579 KRTAP5-1Q6L8H4 278 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms