RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ALMS1Q8TCU4 4167 aa8.81□□□□□ -1
CCDC88B-202ENST00000356786 DNAH5Q8TE73 4624 aa8.78□□□□□ -1
CCDC88B-202ENST00000356786 KRTAP4-5Q9BYR2 181 aa8.78□□□□□ -1
CCDC88B-202ENST00000356786 DNAH10Q8IVF4 4471 aa8.74□□□□□ -1.01
CCDC88B-202ENST00000356786 DNAH11Q96DT5 4516 aa8.73□□□□□ -1.01
CCDC88B-202ENST00000356786 VPS13DQ5THJ4 4388 aa8.71□□□□□ -1.02
CCDC88B-202ENST00000356786 STARD9Q9P2P6 4700 aa8.67□□□□□ -1.02
CCDC88B-202ENST00000356786 DNAH17Q9UFH2 4485 aa8.59□□□□□ -1.03
CCDC88B-202ENST00000356786 PRKDCP78527 4128 aaKnown RBP8.59□□□□□ -1.03
CCDC88B-202ENST00000356786 ANK2Q01484 3957 aa8.55□□□□□ -1.04
CCDC88B-202ENST00000356786 KRTAP10-12P60413 245 aa8.51□□□□□ -1.05
CCDC88B-202ENST00000356786 DYNC1H1Q14204 4646 aaKnown RBP8.48□□□□□ -1.05
CCDC88B-202ENST00000356786 LORP23490 312 aaPredicted RBP8.45□□□□□ -1.06
CCDC88B-202ENST00000356786 FAT1Q14517 4588 aa8.44□□□□□ -1.06
CCDC88B-202ENST00000356786 LRP1BQ9NZR2 4599 aa8.44□□□□□ -1.06
CCDC88B-202ENST00000356786 KRTAP23-1A1A580 65 aa8.43□□□□□ -1.06
CCDC88B-202ENST00000356786 KRTAP12-3P60328 96 aa8.42□□□□□ -1.06
CCDC88B-202ENST00000356786 DNAH2Q9P225 4427 aa8.41□□□□□ -1.06
CCDC88B-202ENST00000356786 DNAH3Q8TD57 4116 aa8.37□□□□□ -1.07
CCDC88B-202ENST00000356786 KMT2AQ03164 3969 aa8.37□□□□□ -1.07
CCDC88B-202ENST00000356786 LCE3AQ5TA76 89 aa8.36□□□□□ -1.07
CCDC88B-202ENST00000356786 CMYA5Q8N3K9 4069 aa8.29□□□□□ -1.08
CCDC88B-202ENST00000356786 DNAH8Q96JB1 4490 aa8.28□□□□□ -1.08
CCDC88B-202ENST00000356786 DYNC2H1Q8NCM8 4307 aaKnown RBP8.27□□□□□ -1.08
CCDC88B-202ENST00000356786 CRCT1Q9UGL9 99 aa8.23□□□□□ -1.09
CCDC88B-202ENST00000356786 FAT2Q9NYQ8 4349 aa8.2□□□□□ -1.1
CCDC88B-202ENST00000356786 RYR1P21817 5038 aa8.2□□□□□ -1.1
CCDC88B-202ENST00000356786 SACSQ9NZJ4 4579 aa8.17□□□□□ -1.1
CCDC88B-202ENST00000356786 LYSTQ99698 3801 aa8.15□□□□□ -1.11
CCDC88B-202ENST00000356786 VPS13BQ7Z7G8 4022 aa8.09□□□□□ -1.11
CCDC88B-202ENST00000356786 KIAA1109Q2LD37 5005 aa8.07□□□□□ -1.12
CCDC88B-202ENST00000356786 KRTAP4-1Q9BYQ7 146 aa8.04□□□□□ -1.12
CCDC88B-202ENST00000356786 RYR3Q15413 4870 aa7.98□□□□□ -1.13
CCDC88B-202ENST00000356786 DNAH7Q8WXX0 4024 aa7.98□□□□□ -1.13
CCDC88B-202ENST00000356786 DNAH6Q9C0G6 4158 aa7.97□□□□□ -1.13
CCDC88B-202ENST00000356786 FRAS1Q86XX4 4008 aa7.94□□□□□ -1.14
CCDC88B-202ENST00000356786 APOBP04114 4563 aaKnown RBP7.94□□□□□ -1.14
CCDC88B-202ENST00000356786 HECTD4Q9Y4D8 3996 aa7.93□□□□□ -1.14
CCDC88B-202ENST00000356786 KRTAP17-1Q9BYP8 105 aa7.91□□□□□ -1.14
CCDC88B-202ENST00000356786 MYCBP2O75592 4640 aa7.91□□□□□ -1.14
CCDC88B-202ENST00000356786 HYDINQ4G0P3 5121 aa7.86□□□□□ -1.15
CCDC88B-202ENST00000356786 LRP1Q07954 4544 aaKnown RBP7.84□□□□□ -1.15
CCDC88B-202ENST00000356786 RYR2Q92736 4967 aa7.84□□□□□ -1.15
CCDC88B-202ENST00000356786 KRTAP10-5P60370 271 aa7.84□□□□□ -1.15
CCDC88B-202ENST00000356786 MT1HP80294 61 aa7.69□□□□□ -1.18
CCDC88B-202ENST00000356786 FAT3Q8TDW7 4589 aa7.69□□□□□ -1.18
CCDC88B-202ENST00000356786 PKHD1P08F94 4074 aa7.68□□□□□ -1.18
CCDC88B-202ENST00000356786 SPRR2GQ9BYE4 73 aa7.62□□□□□ -1.19
CCDC88B-202ENST00000356786 MT2AP02795 61 aa7.56□□□□□ -1.2
CCDC88B-202ENST00000356786 HERC2O95714 4834 aa7.56□□□□□ -1.2
CCDC88B-202ENST00000356786 KRTAP8-1Q8IUC2 63 aa7.55□□□□□ -1.2
CCDC88B-202ENST00000356786 HSPG2P98160 4391 aa7.55□□□□□ -1.2
CCDC88B-202ENST00000356786 PKD1P98161 4303 aa7.51□□□□□ -1.21
CCDC88B-202ENST00000356786 KMT2CQ8NEZ4 4911 aaKnown RBP7.5□□□□□ -1.21
CCDC88B-202ENST00000356786 MT1FP04733 61 aa7.46□□□□□ -1.22
CCDC88B-202ENST00000356786 LRP2P98164 4655 aa7.44□□□□□ -1.22
CCDC88B-202ENST00000356786 KRTAP19-5Q3LI72 72 aa7.4□□□□□ -1.23
CCDC88B-202ENST00000356786 BIRC6Q9NR09 4857 aa7.38□□□□□ -1.23
CCDC88B-202ENST00000356786 LCE3CQ5T5A8 94 aa7.38□□□□□ -1.23
CCDC88B-202ENST00000356786 LPAP08519 4548 aa7.19□□□□□ -1.26
CCDC88B-202ENST00000356786 KRTAP19-1Q8IUB9 90 aa7.18□□□□□ -1.26
CCDC88B-202ENST00000356786 EPPK1P58107 5090 aaKnown RBP7.15□□□□□ -1.26
CCDC88B-202ENST00000356786 SPRR5A0A1B0GTR4 108 aa7.13□□□□□ -1.27
CCDC88B-202ENST00000356786 HERC1Q15751 4861 aa7.13□□□□□ -1.27
CCDC88B-202ENST00000356786 TNXBP22105 4242 aa7.12□□□□□ -1.27
CCDC88B-202ENST00000356786 KRTAP10-7P60409 375 aaPredicted RBP7.1□□□□□ -1.27
CCDC88B-202ENST00000356786 PCLOQ9Y6V0 5065 aa7.09□□□□□ -1.27
CCDC88B-202ENST00000356786 PKHD1L1Q86WI1 4243 aa7.09□□□□□ -1.27
CCDC88B-202ENST00000356786 LCE2CQ5TA81 110 aa7.08□□□□□ -1.28
CCDC88B-202ENST00000356786 KRTAP19-8Q3LI54 63 aa7.05□□□□□ -1.28
CCDC88B-202ENST00000356786 ABCA13Q86UQ4 5058 aa7.05□□□□□ -1.28
CCDC88B-202ENST00000356786 KRTAP19-4Q3LI73 84 aa7.04□□□□□ -1.28
CCDC88B-202ENST00000356786 KRTAP9-8Q9BYQ0 159 aa7.01□□□□□ -1.29
CCDC88B-202ENST00000356786 SPRR2FQ96RM1 72 aa6.96□□□□□ -1.29
CCDC88B-202ENST00000356786 MT1XP80297 61 aa6.95□□□□□ -1.3
CCDC88B-202ENST00000356786 KRTAP19-2Q3LHN2 52 aa6.92□□□□□ -1.3
CCDC88B-202ENST00000356786 KRTAP12-4P60329 112 aa6.9□□□□□ -1.3
CCDC88B-202ENST00000356786 MT1BP07438 61 aa6.9□□□□□ -1.31
CCDC88B-202ENST00000356786 KRTAP9-3Q9BYQ3 159 aa6.8□□□□□ -1.32
CCDC88B-202ENST00000356786 MUC17Q685J3 4493 aa6.78□□□□□ -1.32
CCDC88B-202ENST00000356786 LCE3BQ5TA77 95 aa6.77□□□□□ -1.32
CCDC88B-202ENST00000356786 FLGP20930 4061 aaPredicted RBP6.71□□□□□ -1.33
CCDC88B-202ENST00000356786 MT1GP13640 62 aa6.7□□□□□ -1.34
CCDC88B-202ENST00000356786 KRTAP4-8A0A0G2JLE6 195 aa6.7□□□□□ -1.34
CCDC88B-202ENST00000356786 KRTAP4-8Q9BYQ9 185 aa6.7□□□□□ -1.34
CCDC88B-202ENST00000356786 SYNE1Q8NF91 8797 aaKnown RBP6.61□□□□□ -1.35
CCDC88B-202ENST00000356786 RNF213Q63HN8 5207 aa6.57□□□□□ -1.36
CCDC88B-202ENST00000356786 LCE2BO14633 110 aa6.55□□□□□ -1.36
CCDC88B-202ENST00000356786 FAT4Q6V0I7 4981 aa6.54□□□□□ -1.36
CCDC88B-202ENST00000356786 LCE3DQ9BYE3 92 aa6.49□□□□□ -1.37
CCDC88B-202ENST00000356786 KRTAP4-7Q9BYR0 210 aa6.46□□□□□ -1.38
CCDC88B-202ENST00000356786 HMCN2Q8NDA2 5059 aa6.46□□□□□ -1.38
CCDC88B-202ENST00000356786 UBR4Q5T4S7 5183 aa6.41□□□□□ -1.38
CCDC88B-202ENST00000356786 LCE3EQ5T5B0 92 aa6.41□□□□□ -1.38
CCDC88B-202ENST00000356786 MUC2Q02817 5179 aa6.4□□□□□ -1.38
CCDC88B-202ENST00000356786 SPRR2EP22531 72 aa6.4□□□□□ -1.38
CCDC88B-202ENST00000356786 SPRR2BP35325 72 aa6.4□□□□□ -1.38
CCDC88B-202ENST00000356786 SPRR2AP35326 72 aa6.4□□□□□ -1.38
CCDC88B-202ENST00000356786 MT1LQ93083 61 aa6.31□□□□□ -1.4
CCDC88B-202ENST00000356786 FSIP2Q5CZC0 6907 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms