RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 KRTAP10-4P60372 401 aaPredicted RBP5.86□□□□□ -1.47
COLCA1-201ENST00000355430 DNAH3Q8TD57 4116 aa5.86□□□□□ -1.47
COLCA1-201ENST00000355430 DNAH17Q9UFH2 4485 aa5.86□□□□□ -1.47
COLCA1-201ENST00000355430 VPS13DQ5THJ4 4388 aa5.85□□□□□ -1.47
COLCA1-201ENST00000355430 DNAH8Q96JB1 4490 aa5.8□□□□□ -1.48
COLCA1-201ENST00000355430 DNAH11Q96DT5 4516 aa5.79□□□□□ -1.48
COLCA1-201ENST00000355430 CMYA5Q8N3K9 4069 aa5.78□□□□□ -1.48
COLCA1-201ENST00000355430 STARD9Q9P2P6 4700 aa5.76□□□□□ -1.49
COLCA1-201ENST00000355430 DNAH2Q9P225 4427 aa5.74□□□□□ -1.49
COLCA1-201ENST00000355430 KRTAP15-1Q3LI76 137 aa5.73□□□□□ -1.49
COLCA1-201ENST00000355430 ANK2Q01484 3957 aa5.73□□□□□ -1.49
COLCA1-201ENST00000355430 DNAH5Q8TE73 4624 aa5.7□□□□□ -1.5
COLCA1-201ENST00000355430 LYSTQ99698 3801 aa5.66□□□□□ -1.5
COLCA1-201ENST00000355430 FRAS1Q86XX4 4008 aa5.65□□□□□ -1.5
COLCA1-201ENST00000355430 KMT2AQ03164 3969 aa5.64□□□□□ -1.51
COLCA1-201ENST00000355430 DYNC2H1Q8NCM8 4307 aaKnown RBP5.61□□□□□ -1.51
COLCA1-201ENST00000355430 LRP1BQ9NZR2 4599 aa5.58□□□□□ -1.52
COLCA1-201ENST00000355430 PRKDCP78527 4128 aaKnown RBP5.57□□□□□ -1.52
COLCA1-201ENST00000355430 DNAH7Q8WXX0 4024 aa5.55□□□□□ -1.52
COLCA1-201ENST00000355430 HECTD4Q9Y4D8 3996 aa5.55□□□□□ -1.52
COLCA1-201ENST00000355430 DYNC1H1Q14204 4646 aaKnown RBP5.51□□□□□ -1.53
COLCA1-201ENST00000355430 VPS13BQ7Z7G8 4022 aa5.5□□□□□ -1.53
COLCA1-201ENST00000355430 SACSQ9NZJ4 4579 aa5.5□□□□□ -1.53
COLCA1-201ENST00000355430 LORP23490 312 aaPredicted RBP5.5□□□□□ -1.53
COLCA1-201ENST00000355430 DNHD1Q96M86 4753 aa5.48□□□□□ -1.53
COLCA1-201ENST00000355430 FAT1Q14517 4588 aa5.47□□□□□ -1.53
COLCA1-201ENST00000355430 DNAH6Q9C0G6 4158 aa5.46□□□□□ -1.54
COLCA1-201ENST00000355430 FAT2Q9NYQ8 4349 aa5.44□□□□□ -1.54
COLCA1-201ENST00000355430 KRTAP10-12P60413 245 aa5.31□□□□□ -1.56
COLCA1-201ENST00000355430 KRTAP4-1Q9BYQ7 146 aa5.28□□□□□ -1.56
COLCA1-201ENST00000355430 APOBP04114 4563 aaKnown RBP5.26□□□□□ -1.57
COLCA1-201ENST00000355430 MT1HP80294 61 aa5.24□□□□□ -1.57
COLCA1-201ENST00000355430 KRTAP23-1A1A580 65 aa5.21□□□□□ -1.58
COLCA1-201ENST00000355430 LCE3AQ5TA76 89 aa5.2□□□□□ -1.58
COLCA1-201ENST00000355430 HYDINQ4G0P3 5121 aa5.19□□□□□ -1.58
COLCA1-201ENST00000355430 FAT3Q8TDW7 4589 aa5.17□□□□□ -1.58
COLCA1-201ENST00000355430 KRTAP8-1Q8IUC2 63 aa5.16□□□□□ -1.58
COLCA1-201ENST00000355430 MYCBP2O75592 4640 aa5.15□□□□□ -1.58
COLCA1-201ENST00000355430 LRP1Q07954 4544 aaKnown RBP5.13□□□□□ -1.59
COLCA1-201ENST00000355430 PKD1P98161 4303 aa5.12□□□□□ -1.59
COLCA1-201ENST00000355430 RYR1P21817 5038 aa5.12□□□□□ -1.59
COLCA1-201ENST00000355430 KRTAP17-1Q9BYP8 105 aa5.11□□□□□ -1.59
COLCA1-201ENST00000355430 KRTAP12-3P60328 96 aa5.09□□□□□ -1.59
COLCA1-201ENST00000355430 CRCT1Q9UGL9 99 aa5.09□□□□□ -1.59
COLCA1-201ENST00000355430 PKHD1P08F94 4074 aa5.08□□□□□ -1.6
COLCA1-201ENST00000355430 INE1O15225 51 aa5.08□□□□□ -1.6
COLCA1-201ENST00000355430 MT2AP02795 61 aa5.08□□□□□ -1.6
COLCA1-201ENST00000355430 PKHD1L1Q86WI1 4243 aa5.01□□□□□ -1.61
COLCA1-201ENST00000355430 RYR3Q15413 4870 aa4.98□□□□□ -1.61
COLCA1-201ENST00000355430 BIRC6Q9NR09 4857 aa4.98□□□□□ -1.61
COLCA1-201ENST00000355430 RYR2Q92736 4967 aa4.96□□□□□ -1.62
COLCA1-201ENST00000355430 MT1FP04733 61 aa4.95□□□□□ -1.62
COLCA1-201ENST00000355430 HSPG2P98160 4391 aa4.94□□□□□ -1.62
COLCA1-201ENST00000355430 SPRR2GQ9BYE4 73 aa4.94□□□□□ -1.62
COLCA1-201ENST00000355430 KIAA1109Q2LD37 5005 aa4.92□□□□□ -1.62
COLCA1-201ENST00000355430 TNXBP22105 4242 aa4.9□□□□□ -1.63
COLCA1-201ENST00000355430 LRP2P98164 4655 aa4.86□□□□□ -1.63
COLCA1-201ENST00000355430 SPRR2FQ96RM1 72 aa4.86□□□□□ -1.63
COLCA1-201ENST00000355430 LPAP08519 4548 aa4.82□□□□□ -1.64
COLCA1-201ENST00000355430 KMT2CQ8NEZ4 4911 aaKnown RBP4.79□□□□□ -1.64
COLCA1-201ENST00000355430 HERC2O95714 4834 aa4.74□□□□□ -1.65
COLCA1-201ENST00000355430 HERC1Q15751 4861 aa4.74□□□□□ -1.65
COLCA1-201ENST00000355430 KRTAP19-1Q8IUB9 90 aa4.74□□□□□ -1.65
COLCA1-201ENST00000355430 KRTAP10-7P60409 375 aaPredicted RBP4.72□□□□□ -1.65
COLCA1-201ENST00000355430 SPRR2EP22531 72 aa4.66□□□□□ -1.66
COLCA1-201ENST00000355430 SPRR2BP35325 72 aa4.66□□□□□ -1.66
COLCA1-201ENST00000355430 SPRR2AP35326 72 aa4.66□□□□□ -1.66
COLCA1-201ENST00000355430 KRTAP19-5Q3LI72 72 aa4.66□□□□□ -1.66
COLCA1-201ENST00000355430 KRTAP19-8Q3LI54 63 aa4.65□□□□□ -1.66
COLCA1-201ENST00000355430 SPRR5A0A1B0GTR4 108 aa4.63□□□□□ -1.67
COLCA1-201ENST00000355430 KRTAP10-5P60370 271 aa4.61□□□□□ -1.67
COLCA1-201ENST00000355430 KRTAP19-2Q3LHN2 52 aa4.6□□□□□ -1.67
COLCA1-201ENST00000355430 LCE3CQ5T5A8 94 aa4.6□□□□□ -1.67
COLCA1-201ENST00000355430 PCLOQ9Y6V0 5065 aa4.58□□□□□ -1.68
COLCA1-201ENST00000355430 MT1XP80297 61 aa4.58□□□□□ -1.68
COLCA1-201ENST00000355430 LCE2CQ5TA81 110 aa4.58□□□□□ -1.68
COLCA1-201ENST00000355430 KRTAP9-8Q9BYQ0 159 aa4.58□□□□□ -1.68
COLCA1-201ENST00000355430 KRTAP19-4Q3LI73 84 aa4.57□□□□□ -1.68
COLCA1-201ENST00000355430 MT1BP07438 61 aa4.54□□□□□ -1.68
COLCA1-201ENST00000355430 SPRR2DP22532 72 aa4.53□□□□□ -1.68
COLCA1-201ENST00000355430 KRTAP9-3Q9BYQ3 159 aa4.5□□□□□ -1.69
COLCA1-201ENST00000355430 KRTAP9-2Q9BYQ4 174 aa4.49□□□□□ -1.69
COLCA1-201ENST00000355430 FLGP20930 4061 aaPredicted RBP4.48□□□□□ -1.69
COLCA1-201ENST00000355430 LCE2BO14633 110 aa4.46□□□□□ -1.7
COLCA1-201ENST00000355430 MUC17Q685J3 4493 aa4.46□□□□□ -1.7
COLCA1-201ENST00000355430 EPPK1P58107 5090 aaKnown RBP4.41□□□□□ -1.7
COLCA1-201ENST00000355430 LCE2DQ5TA82 110 aaPredicted RBP4.37□□□□□ -1.71
COLCA1-201ENST00000355430 KRTAP9-6A0A140TA67 174 aa4.36□□□□□ -1.71
COLCA1-201ENST00000355430 ABCA13Q86UQ4 5058 aa4.35□□□□□ -1.71
COLCA1-201ENST00000355430 KRTAP4-8A0A0G2JLE6 195 aa4.34□□□□□ -1.72
COLCA1-201ENST00000355430 KRTAP4-8Q9BYQ9 185 aa4.34□□□□□ -1.72
COLCA1-201ENST00000355430 MT1GP13640 62 aa4.3□□□□□ -1.72
COLCA1-201ENST00000355430 KRTAP12-4P60329 112 aa4.29□□□□□ -1.72
COLCA1-201ENST00000355430 KRTAP19-6Q3LI70 58 aa4.26□□□□□ -1.73
COLCA1-201ENST00000355430 LCE2AQ5TA79 106 aaPredicted RBP4.26□□□□□ -1.73
COLCA1-201ENST00000355430 KRTAP4-7Q9BYR0 210 aa4.18□□□□□ -1.74
COLCA1-201ENST00000355430 KRTAP19-3Q7Z4W3 81 aa4.15□□□□□ -1.74
COLCA1-201ENST00000355430 HMCN2Q8NDA2 5059 aa4.14□□□□□ -1.75
COLCA1-201ENST00000355430 MUC2Q02817 5179 aa4.09□□□□□ -1.76
COLCA1-201ENST00000355430 LCE3BQ5TA77 95 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms