RNA–Protein interactions for RNA: ENST00000345662.5

SPAST-202, Transcript of spastin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SPAST, Length 5,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-202ENST00000345662 KRTAP4-5Q9BYR2 181 aa7.21□□□□□ -1.26
SPAST-202ENST00000345662 DNAH5Q8TE73 4624 aa7.12□□□□□ -1.27
SPAST-202ENST00000345662 ALMS1Q8TCU4 4167 aa7.11□□□□□ -1.27
SPAST-202ENST00000345662 DNAH9Q9NYC9 4486 aa7.11□□□□□ -1.27
SPAST-202ENST00000345662 DNAH10Q8IVF4 4471 aa7.11□□□□□ -1.27
SPAST-202ENST00000345662 DNAH11Q96DT5 4516 aa7.07□□□□□ -1.28
SPAST-202ENST00000345662 DNAH1Q9P2D7 4330 aa7.07□□□□□ -1.28
SPAST-202ENST00000345662 AKAP9Q99996 3911 aa7.07□□□□□ -1.28
SPAST-202ENST00000345662 ZNF469Q96JG9 3925 aaPredicted RBP7□□□□□ -1.29
SPAST-202ENST00000345662 PLECQ15149 4684 aaKnown RBP6.99□□□□□ -1.29
SPAST-202ENST00000345662 KRTAP10-5P60370 271 aa6.95□□□□□ -1.3
SPAST-202ENST00000345662 DNAH2Q9P225 4427 aa6.94□□□□□ -1.3
SPAST-202ENST00000345662 DNAH17Q9UFH2 4485 aa6.94□□□□□ -1.3
SPAST-202ENST00000345662 KRTAP4-1Q9BYQ7 146 aa6.91□□□□□ -1.3
SPAST-202ENST00000345662 VPS13DQ5THJ4 4388 aa6.87□□□□□ -1.31
SPAST-202ENST00000345662 FAT1Q14517 4588 aa6.85□□□□□ -1.31
SPAST-202ENST00000345662 DNAH8Q96JB1 4490 aa6.85□□□□□ -1.31
SPAST-202ENST00000345662 SPRR2GQ9BYE4 73 aa6.84□□□□□ -1.31
SPAST-202ENST00000345662 KRTAP8-1Q8IUC2 63 aa6.73□□□□□ -1.33
SPAST-202ENST00000345662 DYNC1H1Q14204 4646 aaKnown RBP6.72□□□□□ -1.33
SPAST-202ENST00000345662 SACSQ9NZJ4 4579 aa6.68□□□□□ -1.34
SPAST-202ENST00000345662 MT2AP02795 61 aa6.68□□□□□ -1.34
SPAST-202ENST00000345662 LRP1BQ9NZR2 4599 aa6.68□□□□□ -1.34
SPAST-202ENST00000345662 MT1HP80294 61 aa6.66□□□□□ -1.34
SPAST-202ENST00000345662 DNAH3Q8TD57 4116 aa6.66□□□□□ -1.34
SPAST-202ENST00000345662 LCE3CQ5T5A8 94 aa6.64□□□□□ -1.35
SPAST-202ENST00000345662 STARD9Q9P2P6 4700 aa6.63□□□□□ -1.35
SPAST-202ENST00000345662 KRTAP19-5Q3LI72 72 aa6.61□□□□□ -1.35
SPAST-202ENST00000345662 DYNC2H1Q8NCM8 4307 aaKnown RBP6.58□□□□□ -1.36
SPAST-202ENST00000345662 DNHD1Q96M86 4753 aa6.57□□□□□ -1.36
SPAST-202ENST00000345662 MT1FP04733 61 aa6.55□□□□□ -1.36
SPAST-202ENST00000345662 ANK2Q01484 3957 aa6.55□□□□□ -1.36
SPAST-202ENST00000345662 APOBP04114 4563 aaKnown RBP6.5□□□□□ -1.37
SPAST-202ENST00000345662 SPRR5A0A1B0GTR4 108 aa6.5□□□□□ -1.37
SPAST-202ENST00000345662 RYR1P21817 5038 aa6.5□□□□□ -1.37
SPAST-202ENST00000345662 FAT2Q9NYQ8 4349 aa6.5□□□□□ -1.37
SPAST-202ENST00000345662 KRTAP19-4Q3LI73 84 aa6.45□□□□□ -1.38
SPAST-202ENST00000345662 VPS13BQ7Z7G8 4022 aa6.42□□□□□ -1.38
SPAST-202ENST00000345662 KRTAP19-1Q8IUB9 90 aa6.36□□□□□ -1.39
SPAST-202ENST00000345662 MYCBP2O75592 4640 aa6.35□□□□□ -1.39
SPAST-202ENST00000345662 KMT2AQ03164 3969 aa6.34□□□□□ -1.4
SPAST-202ENST00000345662 KRTAP10-7P60409 375 aaPredicted RBP6.32□□□□□ -1.4
SPAST-202ENST00000345662 KRTAP19-8Q3LI54 63 aa6.31□□□□□ -1.4
SPAST-202ENST00000345662 FRAS1Q86XX4 4008 aa6.29□□□□□ -1.4
SPAST-202ENST00000345662 PRKDCP78527 4128 aaKnown RBP6.29□□□□□ -1.4
SPAST-202ENST00000345662 LYSTQ99698 3801 aa6.24□□□□□ -1.41
SPAST-202ENST00000345662 MT1XP80297 61 aa6.2□□□□□ -1.42
SPAST-202ENST00000345662 CMYA5Q8N3K9 4069 aa6.17□□□□□ -1.42
SPAST-202ENST00000345662 KRTAP12-4P60329 112 aa6.15□□□□□ -1.42
SPAST-202ENST00000345662 RYR3Q15413 4870 aa6.15□□□□□ -1.43
SPAST-202ENST00000345662 DNAH6Q9C0G6 4158 aa6.14□□□□□ -1.43
SPAST-202ENST00000345662 FAT3Q8TDW7 4589 aa6.13□□□□□ -1.43
SPAST-202ENST00000345662 SPRR2FQ96RM1 72 aa6.13□□□□□ -1.43
SPAST-202ENST00000345662 KIAA1109Q2LD37 5005 aa6.13□□□□□ -1.43
SPAST-202ENST00000345662 KRTAP17-1Q9BYP8 105 aa6.12□□□□□ -1.43
SPAST-202ENST00000345662 HECTD4Q9Y4D8 3996 aa6.11□□□□□ -1.43
SPAST-202ENST00000345662 LRP1Q07954 4544 aaKnown RBP6.1□□□□□ -1.43
SPAST-202ENST00000345662 DNAH7Q8WXX0 4024 aa6.09□□□□□ -1.43
SPAST-202ENST00000345662 MT1BP07438 61 aa6.08□□□□□ -1.44
SPAST-202ENST00000345662 RYR2Q92736 4967 aa6.04□□□□□ -1.44
SPAST-202ENST00000345662 LCE3BQ5TA77 95 aa6.01□□□□□ -1.45
SPAST-202ENST00000345662 MT1GP13640 62 aa5.95□□□□□ -1.46
SPAST-202ENST00000345662 KRTAP9-8Q9BYQ0 159 aa5.94□□□□□ -1.46
SPAST-202ENST00000345662 LRP2P98164 4655 aa5.89□□□□□ -1.47
SPAST-202ENST00000345662 KRTAP4-8A0A0G2JLE6 195 aa5.88□□□□□ -1.47
SPAST-202ENST00000345662 KRTAP4-8Q9BYQ9 185 aa5.88□□□□□ -1.47
SPAST-202ENST00000345662 LCE2CQ5TA81 110 aa5.85□□□□□ -1.47
SPAST-202ENST00000345662 LCE3DQ9BYE3 92 aa5.8□□□□□ -1.48
SPAST-202ENST00000345662 HSPG2P98160 4391 aa5.79□□□□□ -1.48
SPAST-202ENST00000345662 KRTAP9-3Q9BYQ3 159 aa5.78□□□□□ -1.48
SPAST-202ENST00000345662 PKD1P98161 4303 aa5.77□□□□□ -1.49
SPAST-202ENST00000345662 LCE3EQ5T5B0 92 aa5.74□□□□□ -1.49
SPAST-202ENST00000345662 HERC1Q15751 4861 aa5.72□□□□□ -1.49
SPAST-202ENST00000345662 HYDINQ4G0P3 5121 aa5.7□□□□□ -1.5
SPAST-202ENST00000345662 HERC2O95714 4834 aa5.69□□□□□ -1.5
SPAST-202ENST00000345662 KRTAP4-7Q9BYR0 210 aa5.68□□□□□ -1.5
SPAST-202ENST00000345662 KRTAP19-2Q3LHN2 52 aa5.67□□□□□ -1.5
SPAST-202ENST00000345662 MT1LQ93083 61 aa5.64□□□□□ -1.51
SPAST-202ENST00000345662 PKHD1P08F94 4074 aa5.63□□□□□ -1.51
SPAST-202ENST00000345662 SPRR2EP22531 72 aa5.61□□□□□ -1.51
SPAST-202ENST00000345662 SPRR2BP35325 72 aa5.61□□□□□ -1.51
SPAST-202ENST00000345662 SPRR2AP35326 72 aa5.61□□□□□ -1.51
SPAST-202ENST00000345662 MUC17Q685J3 4493 aa5.57□□□□□ -1.52
SPAST-202ENST00000345662 KMT2CQ8NEZ4 4911 aaKnown RBP5.57□□□□□ -1.52
SPAST-202ENST00000345662 LPAP08519 4548 aa5.56□□□□□ -1.52
SPAST-202ENST00000345662 MT1EP04732 61 aa5.55□□□□□ -1.52
SPAST-202ENST00000345662 PCLOQ9Y6V0 5065 aa5.54□□□□□ -1.52
SPAST-202ENST00000345662 KRTAP19-3Q7Z4W3 81 aa5.54□□□□□ -1.52
SPAST-202ENST00000345662 PKHD1L1Q86WI1 4243 aa5.54□□□□□ -1.52
SPAST-202ENST00000345662 LCE2BO14633 110 aa5.5□□□□□ -1.53
SPAST-202ENST00000345662 FLGP20930 4061 aaPredicted RBP5.47□□□□□ -1.53
SPAST-202ENST00000345662 TNXBP22105 4242 aa5.45□□□□□ -1.54
SPAST-202ENST00000345662 PRM1P04553 51 aa5.42□□□□□ -1.54
SPAST-202ENST00000345662 SPRR2DP22532 72 aa5.41□□□□□ -1.54
SPAST-202ENST00000345662 BIRC6Q9NR09 4857 aa5.39□□□□□ -1.55
SPAST-202ENST00000345662 MT1MQ8N339 61 aa5.34□□□□□ -1.55
SPAST-202ENST00000345662 KRTAP2-3P0C7H8 128 aa5.33□□□□□ -1.56
SPAST-202ENST00000345662 KRTAP2-4Q9BYR9 128 aa5.33□□□□□ -1.56
SPAST-202ENST00000345662 KRTAP2-1Q9BYU5 128 aa5.33□□□□□ -1.56
SPAST-202ENST00000345662 LOC100996750A0A140TA64 210 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms