RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 DNAH11Q96DT5 4516 aa4.64□□□□□ -1.67
ATG4A-201ENST00000343524 HSPG2P98160 4391 aa4.64□□□□□ -1.67
ATG4A-201ENST00000343524 DMBT1Q9UGM3 2413 aaPredicted RBP4.64□□□□□ -1.67
ATG4A-201ENST00000343524 A0A1B0GVY2 172 aa4.63□□□□□ -1.67
ATG4A-201ENST00000343524 H0YAA0 97 aa4.63□□□□□ -1.67
ATG4A-201ENST00000343524 PANO1I0J062 215 aa4.63□□□□□ -1.67
ATG4A-201ENST00000343524 UBE2DNLQ8IWF7 75 aa4.63□□□□□ -1.67
ATG4A-201ENST00000343524 ANAPC11Q9NYG5 84 aa4.63□□□□□ -1.67
ATG4A-201ENST00000343524 PKHD1P08F94 4074 aa4.62□□□□□ -1.67
ATG4A-201ENST00000343524 KRTAP1-5Q9BYS1 174 aa4.62□□□□□ -1.67
ATG4A-201ENST00000343524 A0A1B0GU33 70 aa4.61□□□□□ -1.67
ATG4A-201ENST00000343524 Q6ZSA8 131 aa4.61□□□□□ -1.67
ATG4A-201ENST00000343524 CIRBP-AS1Q8TBR5 109 aa4.6□□□□□ -1.67
ATG4A-201ENST00000343524 P0C880 135 aa4.6□□□□□ -1.67
ATG4A-201ENST00000343524 NUPR2A6NF83 97 aa4.59□□□□□ -1.67
ATG4A-201ENST00000343524 PSORS1C2Q9UIG4 136 aa4.59□□□□□ -1.67
ATG4A-201ENST00000343524 SPINK1P00995 79 aa4.58□□□□□ -1.68
ATG4A-201ENST00000343524 H1FX-AS1Q4G0G2 97 aa4.58□□□□□ -1.68
ATG4A-201ENST00000343524 FAT2Q9NYQ8 4349 aa4.58□□□□□ -1.68
ATG4A-201ENST00000343524 KRTAP16-1A8MUX0 517 aa4.58□□□□□ -1.68
ATG4A-201ENST00000343524 VPS13DQ5THJ4 4388 aa4.57□□□□□ -1.68
ATG4A-201ENST00000343524 DNAH17Q9UFH2 4485 aa4.57□□□□□ -1.68
ATG4A-201ENST00000343524 DNAH6Q9C0G6 4158 aa4.55□□□□□ -1.68
ATG4A-201ENST00000343524 SPINT4Q6UDR6 99 aa4.55□□□□□ -1.68
ATG4A-201ENST00000343524 DNAH2Q9P225 4427 aa4.54□□□□□ -1.68
ATG4A-201ENST00000343524 PKD1P98161 4303 aa4.53□□□□□ -1.68
ATG4A-201ENST00000343524 SEC61BP60468 96 aaKnown RBP4.52□□□□□ -1.69
ATG4A-201ENST00000343524 NBDYA0A0U1RRE5 68 aa4.51□□□□□ -1.69
ATG4A-201ENST00000343524 C20orf166-AS1Q96NR2 134 aa4.5□□□□□ -1.69
ATG4A-201ENST00000343524 APLNQ9ULZ1 77 aa4.5□□□□□ -1.69
ATG4A-201ENST00000343524 A0A087WTM6 91 aa4.5□□□□□ -1.69
ATG4A-201ENST00000343524 Q6ZRN7 208 aaPredicted RBP4.5□□□□□ -1.69
ATG4A-201ENST00000343524 TYMSOSQ8TAI1 123 aa4.49□□□□□ -1.69
ATG4A-201ENST00000343524 SRRM2Q9UQ35 2752 aaKnown RBP4.48□□□□□ -1.69
ATG4A-201ENST00000343524 APOBP04114 4563 aaKnown RBP4.47□□□□□ -1.69
ATG4A-201ENST00000343524 COX6B2Q6YFQ2 88 aa4.46□□□□□ -1.69
ATG4A-201ENST00000343524 NDUFAF8A1L188 74 aa4.46□□□□□ -1.7
ATG4A-201ENST00000343524 HMCN2Q8NDA2 5059 aa4.45□□□□□ -1.7
ATG4A-201ENST00000343524 MYCBP2O75592 4640 aa4.45□□□□□ -1.7
ATG4A-201ENST00000343524 RPL37P61927 97 aaKnown RBP4.44□□□□□ -1.7
ATG4A-201ENST00000343524 KRTAP15-1Q3LI76 137 aa4.44□□□□□ -1.7
ATG4A-201ENST00000343524 CRIPTQ9P021 101 aa4.44□□□□□ -1.7
ATG4A-201ENST00000343524 LRP1BQ9NZR2 4599 aa4.43□□□□□ -1.7
ATG4A-201ENST00000343524 KRTAP13-2Q52LG2 175 aa4.38□□□□□ -1.71
ATG4A-201ENST00000343524 TPRXLQ17RH7 258 aa4.37□□□□□ -1.71
ATG4A-201ENST00000343524 VPS13BQ7Z7G8 4022 aa4.36□□□□□ -1.71
ATG4A-201ENST00000343524 FLG2Q5D862 2391 aaPredicted RBP4.36□□□□□ -1.71
ATG4A-201ENST00000343524 DNAH5Q8TE73 4624 aa4.36□□□□□ -1.71
ATG4A-201ENST00000343524 RPS29P62273 56 aaKnown RBP4.36□□□□□ -1.71
ATG4A-201ENST00000343524 RNF213Q63HN8 5207 aa4.34□□□□□ -1.71
ATG4A-201ENST00000343524 Q5VSD8 79 aa4.33□□□□□ -1.72
ATG4A-201ENST00000343524 KRTAP23-1A1A580 65 aa4.32□□□□□ -1.72
ATG4A-201ENST00000343524 FAT1Q14517 4588 aa4.31□□□□□ -1.72
ATG4A-201ENST00000343524 LUZP6Q538Z0 58 aa4.3□□□□□ -1.72
ATG4A-201ENST00000343524 KRTAP1-4P0C5Y4 121 aa4.27□□□□□ -1.73
ATG4A-201ENST00000343524 C10orf95Q9H7T3 257 aa4.27□□□□□ -1.73
ATG4A-201ENST00000343524 A0A0D9SG42 100 aa4.25□□□□□ -1.73
ATG4A-201ENST00000343524 MUC2Q02817 5179 aa4.24□□□□□ -1.73
ATG4A-201ENST00000343524 DNAH8Q96JB1 4490 aa4.24□□□□□ -1.73
ATG4A-201ENST00000343524 S4R3F8 94 aa4.24□□□□□ -1.73
ATG4A-201ENST00000343524 KRTAP10-6P60371 365 aaPredicted RBP4.23□□□□□ -1.73
ATG4A-201ENST00000343524 FAT4Q6V0I7 4981 aa4.21□□□□□ -1.74
ATG4A-201ENST00000343524 KRTAP13-4Q3LI77 160 aa4.21□□□□□ -1.74
ATG4A-201ENST00000343524 PKHD1L1Q86WI1 4243 aa4.2□□□□□ -1.74
ATG4A-201ENST00000343524 LRP2P98164 4655 aa4.18□□□□□ -1.74
ATG4A-201ENST00000343524 SMR3BP02814 79 aaPredicted RBP4.18□□□□□ -1.74
ATG4A-201ENST00000343524 C9orf92A6NGG3 77 aa4.16□□□□□ -1.74
ATG4A-201ENST00000343524 LRP1Q07954 4544 aaKnown RBP4.14□□□□□ -1.75
ATG4A-201ENST00000343524 KRTAP12-2P59991 146 aa4.14□□□□□ -1.75
ATG4A-201ENST00000343524 CRCT1Q9UGL9 99 aa4.13□□□□□ -1.75
ATG4A-201ENST00000343524 FAT3Q8TDW7 4589 aa4.13□□□□□ -1.75
ATG4A-201ENST00000343524 KRTAP12-1P59990 96 aa4.11□□□□□ -1.75
ATG4A-201ENST00000343524 M0QZ58 72 aa4.1□□□□□ -1.75
ATG4A-201ENST00000343524 KRTAP10-1P60331 282 aa4.1□□□□□ -1.75
ATG4A-201ENST00000343524 PLAC4Q8WY50 150 aa4.09□□□□□ -1.75
ATG4A-201ENST00000343524 TNXBP22105 4242 aa4.06□□□□□ -1.76
ATG4A-201ENST00000343524 MT1HL1P0DM35 61 aa4.02□□□□□ -1.77
ATG4A-201ENST00000343524 KRTAP10-4P60372 401 aaPredicted RBP4.01□□□□□ -1.77
ATG4A-201ENST00000343524 PP632Q6XCG6 107 aa4□□□□□ -1.77
ATG4A-201ENST00000343524 CAMK2N1Q7Z7J9 78 aa3.97□□□□□ -1.77
ATG4A-201ENST00000343524 FSIP2Q5CZC0 6907 aa3.96□□□□□ -1.78
ATG4A-201ENST00000343524 LCE1AQ5T7P2 110 aa3.9□□□□□ -1.78
ATG4A-201ENST00000343524 KRTAP10-8P60410 259 aa3.88□□□□□ -1.79
ATG4A-201ENST00000343524 LPAP08519 4548 aa3.87□□□□□ -1.79
ATG4A-201ENST00000343524 R4GN34 69 aa3.87□□□□□ -1.79
ATG4A-201ENST00000343524 PRO2289Q9P1D8 64 aa3.82□□□□□ -1.8
ATG4A-201ENST00000343524 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.78□□□□□ -1.8
ATG4A-201ENST00000343524 SPRR5A0A1B0GTR4 108 aa3.77□□□□□ -1.81
ATG4A-201ENST00000343524 INE1O15225 51 aa3.74□□□□□ -1.81
ATG4A-201ENST00000343524 KRTAP10-7P60409 375 aaPredicted RBP3.74□□□□□ -1.81
ATG4A-201ENST00000343524 KRTAP5-11Q6L8G4 156 aa3.74□□□□□ -1.81
ATG4A-201ENST00000343524 GPR98Q8WXG9 6306 aa3.67□□□□□ -1.82
ATG4A-201ENST00000343524 TNP1P09430 55 aa3.66□□□□□ -1.82
ATG4A-201ENST00000343524 KRTAP2-2Q9BYT5 123 aa3.66□□□□□ -1.82
ATG4A-201ENST00000343524 SSPOA2VEC9 5147 aa3.66□□□□□ -1.82
ATG4A-201ENST00000343524 MUC17Q685J3 4493 aa3.63□□□□□ -1.83
ATG4A-201ENST00000343524 NEBP20929 6669 aa3.59□□□□□ -1.83
ATG4A-201ENST00000343524 LCE1EQ5T753 118 aa3.52□□□□□ -1.85
ATG4A-201ENST00000343524 FCGBPQ9Y6R7 5405 aaPredicted RBP3.52□□□□□ -1.85
ATG4A-201ENST00000343524 SYNE2Q8WXH0 6885 aaKnown RBP3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms