RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 DNAH5Q8TE73 4624 aa6.04□□□□□ -1.44
RTN4-202ENST00000337526 PRKDCP78527 4128 aaKnown RBP6.02□□□□□ -1.45
RTN4-202ENST00000337526 DNAH11Q96DT5 4516 aa6□□□□□ -1.45
RTN4-202ENST00000337526 ANK2Q01484 3957 aa6□□□□□ -1.45
RTN4-202ENST00000337526 KRTAP10-12P60413 245 aa5.99□□□□□ -1.45
RTN4-202ENST00000337526 LORP23490 312 aaPredicted RBP5.98□□□□□ -1.45
RTN4-202ENST00000337526 INE1O15225 51 aa5.93□□□□□ -1.46
RTN4-202ENST00000337526 DNAH1Q9P2D7 4330 aa5.9□□□□□ -1.46
RTN4-202ENST00000337526 KRTAP23-1A1A580 65 aa5.9□□□□□ -1.47
RTN4-202ENST00000337526 KRTAP12-3P60328 96 aa5.9□□□□□ -1.47
RTN4-202ENST00000337526 STARD9Q9P2P6 4700 aa5.89□□□□□ -1.47
RTN4-202ENST00000337526 VPS13DQ5THJ4 4388 aa5.89□□□□□ -1.47
RTN4-202ENST00000337526 DYNC1H1Q14204 4646 aaKnown RBP5.87□□□□□ -1.47
RTN4-202ENST00000337526 KIAA1109Q2LD37 5005 aa5.85□□□□□ -1.47
RTN4-202ENST00000337526 DNAH10Q8IVF4 4471 aa5.85□□□□□ -1.47
RTN4-202ENST00000337526 LCE3AQ5TA76 89 aa5.84□□□□□ -1.47
RTN4-202ENST00000337526 RYR1P21817 5038 aa5.83□□□□□ -1.48
RTN4-202ENST00000337526 LRP1BQ9NZR2 4599 aa5.79□□□□□ -1.48
RTN4-202ENST00000337526 FAT1Q14517 4588 aa5.78□□□□□ -1.48
RTN4-202ENST00000337526 RYR3Q15413 4870 aa5.77□□□□□ -1.49
RTN4-202ENST00000337526 CRCT1Q9UGL9 99 aa5.74□□□□□ -1.49
RTN4-202ENST00000337526 DNAH17Q9UFH2 4485 aa5.7□□□□□ -1.5
RTN4-202ENST00000337526 DNAH8Q96JB1 4490 aa5.69□□□□□ -1.5
RTN4-202ENST00000337526 BIRC6Q9NR09 4857 aa5.68□□□□□ -1.5
RTN4-202ENST00000337526 KRTAP4-1Q9BYQ7 146 aa5.68□□□□□ -1.5
RTN4-202ENST00000337526 RYR2Q92736 4967 aa5.65□□□□□ -1.51
RTN4-202ENST00000337526 FAT2Q9NYQ8 4349 aa5.63□□□□□ -1.51
RTN4-202ENST00000337526 DNAH3Q8TD57 4116 aa5.63□□□□□ -1.51
RTN4-202ENST00000337526 SACSQ9NZJ4 4579 aa5.61□□□□□ -1.51
RTN4-202ENST00000337526 KMT2AQ03164 3969 aa5.61□□□□□ -1.51
RTN4-202ENST00000337526 DNAH2Q9P225 4427 aa5.6□□□□□ -1.51
RTN4-202ENST00000337526 DYNC2H1Q8NCM8 4307 aaKnown RBP5.6□□□□□ -1.51
RTN4-202ENST00000337526 HERC2O95714 4834 aa5.57□□□□□ -1.52
RTN4-202ENST00000337526 KRTAP17-1Q9BYP8 105 aa5.56□□□□□ -1.52
RTN4-202ENST00000337526 LYSTQ99698 3801 aa5.53□□□□□ -1.52
RTN4-202ENST00000337526 CMYA5Q8N3K9 4069 aa5.53□□□□□ -1.52
RTN4-202ENST00000337526 HYDINQ4G0P3 5121 aa5.49□□□□□ -1.53
RTN4-202ENST00000337526 APOBP04114 4563 aaKnown RBP5.49□□□□□ -1.53
RTN4-202ENST00000337526 SPRR2GQ9BYE4 73 aa5.48□□□□□ -1.53
RTN4-202ENST00000337526 MT1HP80294 61 aa5.47□□□□□ -1.53
RTN4-202ENST00000337526 KMT2CQ8NEZ4 4911 aaKnown RBP5.46□□□□□ -1.53
RTN4-202ENST00000337526 MYCBP2O75592 4640 aa5.46□□□□□ -1.54
RTN4-202ENST00000337526 MT2AP02795 61 aa5.45□□□□□ -1.54
RTN4-202ENST00000337526 KRTAP8-1Q8IUC2 63 aa5.42□□□□□ -1.54
RTN4-202ENST00000337526 DNAH7Q8WXX0 4024 aa5.41□□□□□ -1.54
RTN4-202ENST00000337526 KRTAP10-5P60370 271 aa5.4□□□□□ -1.54
RTN4-202ENST00000337526 VPS13BQ7Z7G8 4022 aa5.4□□□□□ -1.55
RTN4-202ENST00000337526 DNAH6Q9C0G6 4158 aa5.39□□□□□ -1.55
RTN4-202ENST00000337526 MT1FP04733 61 aa5.35□□□□□ -1.55
RTN4-202ENST00000337526 LRP1Q07954 4544 aaKnown RBP5.33□□□□□ -1.56
RTN4-202ENST00000337526 FRAS1Q86XX4 4008 aa5.3□□□□□ -1.56
RTN4-202ENST00000337526 HECTD4Q9Y4D8 3996 aa5.27□□□□□ -1.57
RTN4-202ENST00000337526 HSPG2P98160 4391 aa5.27□□□□□ -1.57
RTN4-202ENST00000337526 EPPK1P58107 5090 aaKnown RBP5.26□□□□□ -1.57
RTN4-202ENST00000337526 FAT3Q8TDW7 4589 aa5.25□□□□□ -1.57
RTN4-202ENST00000337526 PCLOQ9Y6V0 5065 aa5.24□□□□□ -1.57
RTN4-202ENST00000337526 KRTAP19-5Q3LI72 72 aa5.23□□□□□ -1.57
RTN4-202ENST00000337526 PKHD1P08F94 4074 aa5.22□□□□□ -1.57
RTN4-202ENST00000337526 HERC1Q15751 4861 aa5.18□□□□□ -1.58
RTN4-202ENST00000337526 KRTAP19-1Q8IUB9 90 aa5.17□□□□□ -1.58
RTN4-202ENST00000337526 LCE3CQ5T5A8 94 aa5.17□□□□□ -1.58
RTN4-202ENST00000337526 LRP2P98164 4655 aa5.13□□□□□ -1.59
RTN4-202ENST00000337526 ABCA13Q86UQ4 5058 aa5.13□□□□□ -1.59
RTN4-202ENST00000337526 KRTAP19-8Q3LI54 63 aa5.09□□□□□ -1.59
RTN4-202ENST00000337526 KRTAP10-7P60409 375 aaPredicted RBP5.06□□□□□ -1.6
RTN4-202ENST00000337526 PKD1P98161 4303 aa5.06□□□□□ -1.6
RTN4-202ENST00000337526 SPRR2FQ96RM1 72 aa5.03□□□□□ -1.6
RTN4-202ENST00000337526 KRTAP19-4Q3LI73 84 aa5.03□□□□□ -1.6
RTN4-202ENST00000337526 MT1XP80297 61 aa4.98□□□□□ -1.61
RTN4-202ENST00000337526 PKHD1L1Q86WI1 4243 aa4.97□□□□□ -1.61
RTN4-202ENST00000337526 MT1BP07438 61 aa4.94□□□□□ -1.62
RTN4-202ENST00000337526 LCE2CQ5TA81 110 aa4.93□□□□□ -1.62
RTN4-202ENST00000337526 SPRR5A0A1B0GTR4 108 aa4.91□□□□□ -1.62
RTN4-202ENST00000337526 KRTAP9-8Q9BYQ0 159 aa4.91□□□□□ -1.62
RTN4-202ENST00000337526 UBR4Q5T4S7 5183 aa4.87□□□□□ -1.63
RTN4-202ENST00000337526 LPAP08519 4548 aa4.81□□□□□ -1.64
RTN4-202ENST00000337526 KRTAP4-8A0A0G2JLE6 195 aa4.8□□□□□ -1.64
RTN4-202ENST00000337526 KRTAP4-8Q9BYQ9 185 aa4.8□□□□□ -1.64
RTN4-202ENST00000337526 RNF213Q63HN8 5207 aa4.79□□□□□ -1.64
RTN4-202ENST00000337526 KRTAP19-2Q3LHN2 52 aa4.77□□□□□ -1.65
RTN4-202ENST00000337526 KRTAP9-3Q9BYQ3 159 aa4.77□□□□□ -1.65
RTN4-202ENST00000337526 KRTAP9-2Q9BYQ4 174 aa4.75□□□□□ -1.65
RTN4-202ENST00000337526 KRTAP12-4P60329 112 aa4.73□□□□□ -1.65
RTN4-202ENST00000337526 MT1GP13640 62 aa4.73□□□□□ -1.65
RTN4-202ENST00000337526 SYNE1Q8NF91 8797 aaKnown RBP4.73□□□□□ -1.65
RTN4-202ENST00000337526 LCE3BQ5TA77 95 aa4.72□□□□□ -1.65
RTN4-202ENST00000337526 TNXBP22105 4242 aa4.72□□□□□ -1.65
RTN4-202ENST00000337526 HMCN2Q8NDA2 5059 aa4.71□□□□□ -1.65
RTN4-202ENST00000337526 LCE2AQ5TA79 106 aaPredicted RBP4.71□□□□□ -1.65
RTN4-202ENST00000337526 FAT4Q6V0I7 4981 aa4.68□□□□□ -1.66
RTN4-202ENST00000337526 MUC17Q685J3 4493 aa4.62□□□□□ -1.67
RTN4-202ENST00000337526 FSIP2Q5CZC0 6907 aa4.61□□□□□ -1.67
RTN4-202ENST00000337526 SPRR2EP22531 72 aa4.61□□□□□ -1.67
RTN4-202ENST00000337526 SPRR2BP35325 72 aa4.61□□□□□ -1.67
RTN4-202ENST00000337526 SPRR2AP35326 72 aa4.61□□□□□ -1.67
RTN4-202ENST00000337526 LCE2DQ5TA82 110 aaPredicted RBP4.6□□□□□ -1.67
RTN4-202ENST00000337526 LCE2BO14633 110 aa4.6□□□□□ -1.67
RTN4-202ENST00000337526 KRTAP9-6A0A140TA67 174 aa4.56□□□□□ -1.68
RTN4-202ENST00000337526 KRTAP4-7Q9BYR0 210 aa4.56□□□□□ -1.68
RTN4-202ENST00000337526 FLGP20930 4061 aaPredicted RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms