RNA–Protein interactions for RNA: ENST00000331920.10

PTCH1-201, Transcript of patched 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTCH1, Length 8,057 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-201ENST00000331920 AKAP9Q99996 3911 aa6.68□□□□□ -1.34
PTCH1-201ENST00000331920 ANK3Q12955 4377 aaKnown RBP6.67□□□□□ -1.34
PTCH1-201ENST00000331920 KRTAP10-7P60409 375 aaPredicted RBP6.6□□□□□ -1.35
PTCH1-201ENST00000331920 HUWE1Q7Z6Z7 4374 aaKnown RBP6.55□□□□□ -1.36
PTCH1-201ENST00000331920 SPRR2FQ96RM1 72 aa6.52□□□□□ -1.37
PTCH1-201ENST00000331920 ALMS1Q8TCU4 4167 aa6.48□□□□□ -1.37
PTCH1-201ENST00000331920 ZNF469Q96JG9 3925 aaPredicted RBP6.42□□□□□ -1.38
PTCH1-201ENST00000331920 KRTAP19-5Q3LI72 72 aa6.35□□□□□ -1.39
PTCH1-201ENST00000331920 DNAH2Q9P225 4427 aa6.33□□□□□ -1.4
PTCH1-201ENST00000331920 FRAS1Q86XX4 4008 aa6.3□□□□□ -1.4
PTCH1-201ENST00000331920 KRTAP10-4P60372 401 aaPredicted RBP6.28□□□□□ -1.4
PTCH1-201ENST00000331920 LCE3BQ5TA77 95 aa6.27□□□□□ -1.4
PTCH1-201ENST00000331920 LCE3CQ5T5A8 94 aa6.27□□□□□ -1.41
PTCH1-201ENST00000331920 MT1HP80294 61 aa6.18□□□□□ -1.42
PTCH1-201ENST00000331920 LYSTQ99698 3801 aa6.18□□□□□ -1.42
PTCH1-201ENST00000331920 SPRR2EP22531 72 aa6.16□□□□□ -1.42
PTCH1-201ENST00000331920 SPRR2BP35325 72 aa6.16□□□□□ -1.42
PTCH1-201ENST00000331920 SPRR2AP35326 72 aa6.16□□□□□ -1.42
PTCH1-201ENST00000331920 ANK2Q01484 3957 aa6.14□□□□□ -1.43
PTCH1-201ENST00000331920 VPS13BQ7Z7G8 4022 aa6.08□□□□□ -1.44
PTCH1-201ENST00000331920 DNAH1Q9P2D7 4330 aa6.08□□□□□ -1.44
PTCH1-201ENST00000331920 CMYA5Q8N3K9 4069 aa6.06□□□□□ -1.44
PTCH1-201ENST00000331920 DNAH3Q8TD57 4116 aa6.05□□□□□ -1.44
PTCH1-201ENST00000331920 KRTAP4-1Q9BYQ7 146 aa6.05□□□□□ -1.44
PTCH1-201ENST00000331920 MT2AP02795 61 aa6.02□□□□□ -1.45
PTCH1-201ENST00000331920 DNAH7Q8WXX0 4024 aa6.02□□□□□ -1.45
PTCH1-201ENST00000331920 KRTAP12-4P60329 112 aa5.99□□□□□ -1.45
PTCH1-201ENST00000331920 KMT2AQ03164 3969 aa5.99□□□□□ -1.45
PTCH1-201ENST00000331920 DNAH9Q9NYC9 4486 aa5.98□□□□□ -1.45
PTCH1-201ENST00000331920 SPRR2GQ9BYE4 73 aa5.98□□□□□ -1.45
PTCH1-201ENST00000331920 SPRR2DP22532 72 aa5.95□□□□□ -1.46
PTCH1-201ENST00000331920 MT1GP13640 62 aa5.93□□□□□ -1.46
PTCH1-201ENST00000331920 MT1FP04733 61 aa5.92□□□□□ -1.46
PTCH1-201ENST00000331920 DNAH8Q96JB1 4490 aa5.91□□□□□ -1.46
PTCH1-201ENST00000331920 LCE2BO14633 110 aa5.86□□□□□ -1.47
PTCH1-201ENST00000331920 DNAH6Q9C0G6 4158 aa5.85□□□□□ -1.47
PTCH1-201ENST00000331920 DNAH10Q8IVF4 4471 aa5.84□□□□□ -1.47
PTCH1-201ENST00000331920 VPS13DQ5THJ4 4388 aa5.84□□□□□ -1.47
PTCH1-201ENST00000331920 PLECQ15149 4684 aaKnown RBP5.83□□□□□ -1.48
PTCH1-201ENST00000331920 DNAH17Q9UFH2 4485 aa5.79□□□□□ -1.48
PTCH1-201ENST00000331920 DNAH11Q96DT5 4516 aa5.77□□□□□ -1.49
PTCH1-201ENST00000331920 FAT2Q9NYQ8 4349 aa5.74□□□□□ -1.49
PTCH1-201ENST00000331920 LCE3DQ9BYE3 92 aa5.73□□□□□ -1.49
PTCH1-201ENST00000331920 DNAH5Q8TE73 4624 aa5.69□□□□□ -1.5
PTCH1-201ENST00000331920 HECTD4Q9Y4D8 3996 aa5.68□□□□□ -1.5
PTCH1-201ENST00000331920 DYNC2H1Q8NCM8 4307 aaKnown RBP5.62□□□□□ -1.51
PTCH1-201ENST00000331920 LCE3EQ5T5B0 92 aa5.62□□□□□ -1.51
PTCH1-201ENST00000331920 STARD9Q9P2P6 4700 aa5.61□□□□□ -1.51
PTCH1-201ENST00000331920 PRKDCP78527 4128 aaKnown RBP5.59□□□□□ -1.52
PTCH1-201ENST00000331920 LCE2CQ5TA81 110 aa5.58□□□□□ -1.52
PTCH1-201ENST00000331920 KRTAP19-4Q3LI73 84 aa5.56□□□□□ -1.52
PTCH1-201ENST00000331920 KRTAP4-8A0A0G2JLE6 195 aa5.49□□□□□ -1.53
PTCH1-201ENST00000331920 KRTAP4-8Q9BYQ9 185 aa5.49□□□□□ -1.53
PTCH1-201ENST00000331920 LCE2DQ5TA82 110 aaPredicted RBP5.49□□□□□ -1.53
PTCH1-201ENST00000331920 LRP1BQ9NZR2 4599 aa5.49□□□□□ -1.53
PTCH1-201ENST00000331920 MT4P47944 62 aa5.45□□□□□ -1.54
PTCH1-201ENST00000331920 FLGP20930 4061 aaPredicted RBP5.44□□□□□ -1.54
PTCH1-201ENST00000331920 MT1XP80297 61 aa5.42□□□□□ -1.54
PTCH1-201ENST00000331920 FAT1Q14517 4588 aa5.4□□□□□ -1.55
PTCH1-201ENST00000331920 LCE1BQ5T7P3 118 aa5.39□□□□□ -1.55
PTCH1-201ENST00000331920 PRM1P04553 51 aa5.39□□□□□ -1.55
PTCH1-201ENST00000331920 SACSQ9NZJ4 4579 aa5.38□□□□□ -1.55
PTCH1-201ENST00000331920 SPRR5A0A1B0GTR4 108 aa5.38□□□□□ -1.55
PTCH1-201ENST00000331920 DYNC1H1Q14204 4646 aaKnown RBP5.37□□□□□ -1.55
PTCH1-201ENST00000331920 LCE1DQ5T752 114 aa5.3□□□□□ -1.56
PTCH1-201ENST00000331920 DNHD1Q96M86 4753 aa5.3□□□□□ -1.56
PTCH1-201ENST00000331920 KRTAP19-1Q8IUB9 90 aa5.29□□□□□ -1.56
PTCH1-201ENST00000331920 KRTAP19-8Q3LI54 63 aa5.27□□□□□ -1.57
PTCH1-201ENST00000331920 KRTAP4-7Q9BYR0 210 aa5.25□□□□□ -1.57
PTCH1-201ENST00000331920 APOBP04114 4563 aaKnown RBP5.24□□□□□ -1.57
PTCH1-201ENST00000331920 PKD1P98161 4303 aa5.2□□□□□ -1.58
PTCH1-201ENST00000331920 MYCBP2O75592 4640 aa5.2□□□□□ -1.58
PTCH1-201ENST00000331920 KRTAP19-3Q7Z4W3 81 aa5.15□□□□□ -1.59
PTCH1-201ENST00000331920 MT1BP07438 61 aa5.14□□□□□ -1.59
PTCH1-201ENST00000331920 PKHD1P08F94 4074 aa5.12□□□□□ -1.59
PTCH1-201ENST00000331920 PKHD1L1Q86WI1 4243 aa5.1□□□□□ -1.59
PTCH1-201ENST00000331920 LOC100996750A0A140TA64 210 aa5.09□□□□□ -1.59
PTCH1-201ENST00000331920 MT3P25713 68 aa5.08□□□□□ -1.6
PTCH1-201ENST00000331920 LRP1Q07954 4544 aaKnown RBP5.07□□□□□ -1.6
PTCH1-201ENST00000331920 RYR1P21817 5038 aa5.06□□□□□ -1.6
PTCH1-201ENST00000331920 LCE5AQ5TCM9 118 aa5.06□□□□□ -1.6
PTCH1-201ENST00000331920 KRTAP9-8Q9BYQ0 159 aa5.04□□□□□ -1.6
PTCH1-201ENST00000331920 MT1LQ93083 61 aa5.03□□□□□ -1.6
PTCH1-201ENST00000331920 FAT3Q8TDW7 4589 aa5□□□□□ -1.61
PTCH1-201ENST00000331920 LPAP08519 4548 aa4.96□□□□□ -1.61
PTCH1-201ENST00000331920 KRTAP9-3Q9BYQ3 159 aa4.92□□□□□ -1.62
PTCH1-201ENST00000331920 MT1EP04732 61 aa4.91□□□□□ -1.62
PTCH1-201ENST00000331920 KRTAP4-3Q9BYR4 195 aa4.91□□□□□ -1.62
PTCH1-201ENST00000331920 LRP2P98164 4655 aa4.89□□□□□ -1.63
PTCH1-201ENST00000331920 KRTAP17-1Q9BYP8 105 aa4.88□□□□□ -1.63
PTCH1-201ENST00000331920 TNXBP22105 4242 aa4.87□□□□□ -1.63
PTCH1-201ENST00000331920 KIAA1109Q2LD37 5005 aa4.86□□□□□ -1.63
PTCH1-201ENST00000331920 RYR2Q92736 4967 aa4.86□□□□□ -1.63
PTCH1-201ENST00000331920 KRTAP4-9Q9BYQ8 210 aa4.86□□□□□ -1.63
PTCH1-201ENST00000331920 RYR3Q15413 4870 aa4.86□□□□□ -1.63
PTCH1-201ENST00000331920 LCE1CQ5T751 118 aa4.84□□□□□ -1.63
PTCH1-201ENST00000331920 LCE1EQ5T753 118 aa4.84□□□□□ -1.63
PTCH1-201ENST00000331920 LCE1FQ5T754 118 aa4.84□□□□□ -1.63
PTCH1-201ENST00000331920 LCE1AQ5T7P2 110 aa4.84□□□□□ -1.63
PTCH1-201ENST00000331920 MT1MQ8N339 61 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms