RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 CMYA5Q8N3K9 4069 aa6.39□□□□□ -1.39
HCFC1-201ENST00000310441 LYSTQ99698 3801 aa6.39□□□□□ -1.39
HCFC1-201ENST00000310441 DNAH7Q8WXX0 4024 aa6.35□□□□□ -1.39
HCFC1-201ENST00000310441 KRTAP19-4Q3LI73 84 aa6.3□□□□□ -1.4
HCFC1-201ENST00000310441 KRTAP10-4P60372 401 aaPredicted RBP6.27□□□□□ -1.41
HCFC1-201ENST00000310441 DNAH3Q8TD57 4116 aa6.25□□□□□ -1.41
HCFC1-201ENST00000310441 DNAH1Q9P2D7 4330 aa6.23□□□□□ -1.41
HCFC1-201ENST00000310441 ZNF469Q96JG9 3925 aaPredicted RBP6.17□□□□□ -1.42
HCFC1-201ENST00000310441 HUWE1Q7Z6Z7 4374 aaKnown RBP6.15□□□□□ -1.42
HCFC1-201ENST00000310441 KRTAP10-7P60409 375 aaPredicted RBP6.15□□□□□ -1.42
HCFC1-201ENST00000310441 DNAH2Q9P225 4427 aa6.13□□□□□ -1.43
HCFC1-201ENST00000310441 ANK3Q12955 4377 aaKnown RBP6.12□□□□□ -1.43
HCFC1-201ENST00000310441 ANK2Q01484 3957 aa6.11□□□□□ -1.43
HCFC1-201ENST00000310441 HECTD4Q9Y4D8 3996 aa6.11□□□□□ -1.43
HCFC1-201ENST00000310441 LORP23490 312 aaPredicted RBP6.05□□□□□ -1.44
HCFC1-201ENST00000310441 SPRR2GQ9BYE4 73 aa6.04□□□□□ -1.44
HCFC1-201ENST00000310441 VPS13BQ7Z7G8 4022 aa6.02□□□□□ -1.45
HCFC1-201ENST00000310441 DNAH6Q9C0G6 4158 aa6□□□□□ -1.45
HCFC1-201ENST00000310441 KRTAP4-5Q9BYR2 181 aa6□□□□□ -1.45
HCFC1-201ENST00000310441 LCE3CQ5T5A8 94 aa6□□□□□ -1.45
HCFC1-201ENST00000310441 KMT2AQ03164 3969 aa5.96□□□□□ -1.46
HCFC1-201ENST00000310441 SPRR2FQ96RM1 72 aa5.86□□□□□ -1.47
HCFC1-201ENST00000310441 KRTAP19-5Q3LI72 72 aa5.85□□□□□ -1.47
HCFC1-201ENST00000310441 MT1HP80294 61 aa5.84□□□□□ -1.47
HCFC1-201ENST00000310441 FRAS1Q86XX4 4008 aa5.82□□□□□ -1.48
HCFC1-201ENST00000310441 MT2AP02795 61 aa5.74□□□□□ -1.49
HCFC1-201ENST00000310441 FLGP20930 4061 aaPredicted RBP5.62□□□□□ -1.51
HCFC1-201ENST00000310441 PRKDCP78527 4128 aaKnown RBP5.61□□□□□ -1.51
HCFC1-201ENST00000310441 FAT2Q9NYQ8 4349 aa5.59□□□□□ -1.51
HCFC1-201ENST00000310441 KRTAP4-1Q9BYQ7 146 aa5.58□□□□□ -1.52
HCFC1-201ENST00000310441 KRTAP12-4P60329 112 aa5.56□□□□□ -1.52
HCFC1-201ENST00000310441 DNAH10Q8IVF4 4471 aa5.56□□□□□ -1.52
HCFC1-201ENST00000310441 MT1FP04733 61 aa5.55□□□□□ -1.52
HCFC1-201ENST00000310441 LCE3BQ5TA77 95 aa5.51□□□□□ -1.53
HCFC1-201ENST00000310441 SPRR2EP22531 72 aa5.5□□□□□ -1.53
HCFC1-201ENST00000310441 SPRR2BP35325 72 aa5.5□□□□□ -1.53
HCFC1-201ENST00000310441 SPRR2AP35326 72 aa5.5□□□□□ -1.53
HCFC1-201ENST00000310441 DNAH9Q9NYC9 4486 aa5.47□□□□□ -1.53
HCFC1-201ENST00000310441 DYNC2H1Q8NCM8 4307 aaKnown RBP5.45□□□□□ -1.54
HCFC1-201ENST00000310441 LCE2BO14633 110 aa5.42□□□□□ -1.54
HCFC1-201ENST00000310441 KRTAP19-8Q3LI54 63 aa5.41□□□□□ -1.54
HCFC1-201ENST00000310441 VPS13DQ5THJ4 4388 aa5.39□□□□□ -1.55
HCFC1-201ENST00000310441 DNAH11Q96DT5 4516 aa5.38□□□□□ -1.55
HCFC1-201ENST00000310441 SPRR2DP22532 72 aa5.37□□□□□ -1.55
HCFC1-201ENST00000310441 MT3P25713 68 aa5.36□□□□□ -1.55
HCFC1-201ENST00000310441 LCE3DQ9BYE3 92 aa5.35□□□□□ -1.55
HCFC1-201ENST00000310441 DNAH17Q9UFH2 4485 aa5.35□□□□□ -1.55
HCFC1-201ENST00000310441 DNAH8Q96JB1 4490 aa5.33□□□□□ -1.56
HCFC1-201ENST00000310441 MT1GP13640 62 aa5.29□□□□□ -1.56
HCFC1-201ENST00000310441 LCE3EQ5T5B0 92 aa5.27□□□□□ -1.57
HCFC1-201ENST00000310441 SPRR5A0A1B0GTR4 108 aa5.27□□□□□ -1.57
HCFC1-201ENST00000310441 MT1XP80297 61 aa5.24□□□□□ -1.57
HCFC1-201ENST00000310441 KRTAP19-1Q8IUB9 90 aa5.22□□□□□ -1.57
HCFC1-201ENST00000310441 DNAH5Q8TE73 4624 aa5.22□□□□□ -1.57
HCFC1-201ENST00000310441 LRP1Q07954 4544 aaKnown RBP5.19□□□□□ -1.58
HCFC1-201ENST00000310441 PKHD1P08F94 4074 aa5.18□□□□□ -1.58
HCFC1-201ENST00000310441 STARD9Q9P2P6 4700 aa5.16□□□□□ -1.58
HCFC1-201ENST00000310441 PKHD1L1Q86WI1 4243 aa5.14□□□□□ -1.59
HCFC1-201ENST00000310441 PLECQ15149 4684 aaKnown RBP5.08□□□□□ -1.6
HCFC1-201ENST00000310441 MT1LQ93083 61 aa5.07□□□□□ -1.6
HCFC1-201ENST00000310441 LCE2CQ5TA81 110 aa5.05□□□□□ -1.6
HCFC1-201ENST00000310441 KRTAP19-3Q7Z4W3 81 aa5□□□□□ -1.61
HCFC1-201ENST00000310441 MT1BP07438 61 aa4.97□□□□□ -1.61
HCFC1-201ENST00000310441 DYNC1H1Q14204 4646 aaKnown RBP4.94□□□□□ -1.62
HCFC1-201ENST00000310441 APOBP04114 4563 aaKnown RBP4.93□□□□□ -1.62
HCFC1-201ENST00000310441 LRP1BQ9NZR2 4599 aa4.93□□□□□ -1.62
HCFC1-201ENST00000310441 KRTAP9-8Q9BYQ0 159 aa4.93□□□□□ -1.62
HCFC1-201ENST00000310441 LCE2DQ5TA82 110 aaPredicted RBP4.9□□□□□ -1.63
HCFC1-201ENST00000310441 KRTAP9-3Q9BYQ3 159 aa4.84□□□□□ -1.63
HCFC1-201ENST00000310441 HSPG2P98160 4391 aa4.83□□□□□ -1.64
HCFC1-201ENST00000310441 KRTAP4-8A0A0G2JLE6 195 aa4.82□□□□□ -1.64
HCFC1-201ENST00000310441 KRTAP4-8Q9BYQ9 185 aa4.82□□□□□ -1.64
HCFC1-201ENST00000310441 PRM1P04553 51 aa4.81□□□□□ -1.64
HCFC1-201ENST00000310441 MT1EP04732 61 aa4.81□□□□□ -1.64
HCFC1-201ENST00000310441 FAT1Q14517 4588 aa4.81□□□□□ -1.64
HCFC1-201ENST00000310441 PKD1P98161 4303 aa4.79□□□□□ -1.64
HCFC1-201ENST00000310441 SACSQ9NZJ4 4579 aa4.76□□□□□ -1.65
HCFC1-201ENST00000310441 TNXBP22105 4242 aa4.72□□□□□ -1.65
HCFC1-201ENST00000310441 MT1MQ8N339 61 aa4.67□□□□□ -1.66
HCFC1-201ENST00000310441 MT4P47944 62 aa4.63□□□□□ -1.67
HCFC1-201ENST00000310441 LCE1DQ5T752 114 aa4.61□□□□□ -1.67
HCFC1-201ENST00000310441 FAT3Q8TDW7 4589 aa4.6□□□□□ -1.67
HCFC1-201ENST00000310441 LCE1BQ5T7P3 118 aa4.58□□□□□ -1.68
HCFC1-201ENST00000310441 MYCBP2O75592 4640 aa4.5□□□□□ -1.69
HCFC1-201ENST00000310441 KRTAP4-7Q9BYR0 210 aa4.5□□□□□ -1.69
HCFC1-201ENST00000310441 KRTAP19-6Q3LI70 58 aa4.5□□□□□ -1.69
HCFC1-201ENST00000310441 MT1AP04731 61 aa4.45□□□□□ -1.7
HCFC1-201ENST00000310441 DNHD1Q96M86 4753 aa4.43□□□□□ -1.7
HCFC1-201ENST00000310441 KRTAP2-3P0C7H8 128 aa4.41□□□□□ -1.7
HCFC1-201ENST00000310441 KRTAP2-4Q9BYR9 128 aa4.41□□□□□ -1.7
HCFC1-201ENST00000310441 KRTAP2-1Q9BYU5 128 aa4.41□□□□□ -1.7
HCFC1-201ENST00000310441 LOC100996750A0A140TA64 210 aa4.37□□□□□ -1.71
HCFC1-201ENST00000310441 RYR1P21817 5038 aa4.34□□□□□ -1.71
HCFC1-201ENST00000310441 LCE5AQ5TCM9 118 aa4.32□□□□□ -1.72
HCFC1-201ENST00000310441 RYR3Q15413 4870 aa4.3□□□□□ -1.72
HCFC1-201ENST00000310441 KRTAP17-1Q9BYP8 105 aa4.27□□□□□ -1.73
HCFC1-201ENST00000310441 KRTAP9-2Q9BYQ4 174 aa4.25□□□□□ -1.73
HCFC1-201ENST00000310441 KRTAP19-2Q3LHN2 52 aa4.25□□□□□ -1.73
HCFC1-201ENST00000310441 MUC17Q685J3 4493 aa4.22□□□□□ -1.73
HCFC1-201ENST00000310441 LCE1AQ5T7P2 110 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 152.7 ms