RNA–Protein interactions for RNA: ENST00000306085.10

TRIM56-201, Transcript of tripartite motif containing 56, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TRIM56, Length 10,952 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-201ENST00000306085 KRTAP10-7P60409 375 aaPredicted RBP5.37□□□□□ -1.55
TRIM56-201ENST00000306085 BSNQ9UPA5 3926 aa5.34□□□□□ -1.55
TRIM56-201ENST00000306085 KRTAP4-5Q9BYR2 181 aa5.29□□□□□ -1.56
TRIM56-201ENST00000306085 SPRR2FQ96RM1 72 aa5.22□□□□□ -1.57
TRIM56-201ENST00000306085 LYSTQ99698 3801 aa5.21□□□□□ -1.57
TRIM56-201ENST00000306085 KRTAP10-4P60372 401 aaPredicted RBP5.17□□□□□ -1.58
TRIM56-201ENST00000306085 DNAH3Q8TD57 4116 aa5.16□□□□□ -1.58
TRIM56-201ENST00000306085 KRTAP19-5Q3LI72 72 aa5.15□□□□□ -1.58
TRIM56-201ENST00000306085 LCE3CQ5T5A8 94 aa5.15□□□□□ -1.59
TRIM56-201ENST00000306085 ZNF469Q96JG9 3925 aaPredicted RBP5.13□□□□□ -1.59
TRIM56-201ENST00000306085 LCE3BQ5TA77 95 aa5.09□□□□□ -1.6
TRIM56-201ENST00000306085 HECTD4Q9Y4D8 3996 aa4.96□□□□□ -1.62
TRIM56-201ENST00000306085 DNAH7Q8WXX0 4024 aa4.95□□□□□ -1.62
TRIM56-201ENST00000306085 CMYA5Q8N3K9 4069 aa4.95□□□□□ -1.62
TRIM56-201ENST00000306085 DNAH2Q9P225 4427 aa4.95□□□□□ -1.62
TRIM56-201ENST00000306085 KRTAP12-4P60329 112 aa4.94□□□□□ -1.62
TRIM56-201ENST00000306085 ANK2Q01484 3957 aa4.93□□□□□ -1.62
TRIM56-201ENST00000306085 MT1HP80294 61 aa4.91□□□□□ -1.62
TRIM56-201ENST00000306085 SPRR2GQ9BYE4 73 aa4.89□□□□□ -1.63
TRIM56-201ENST00000306085 SPRR2EP22531 72 aa4.88□□□□□ -1.63
TRIM56-201ENST00000306085 SPRR2BP35325 72 aa4.88□□□□□ -1.63
TRIM56-201ENST00000306085 SPRR2AP35326 72 aa4.88□□□□□ -1.63
TRIM56-201ENST00000306085 VPS13BQ7Z7G8 4022 aa4.87□□□□□ -1.63
TRIM56-201ENST00000306085 MT2AP02795 61 aa4.84□□□□□ -1.63
TRIM56-201ENST00000306085 DNAH1Q9P2D7 4330 aa4.81□□□□□ -1.64
TRIM56-201ENST00000306085 KRTAP4-1Q9BYQ7 146 aa4.81□□□□□ -1.64
TRIM56-201ENST00000306085 KMT2AQ03164 3969 aa4.81□□□□□ -1.64
TRIM56-201ENST00000306085 HUWE1Q7Z6Z7 4374 aaKnown RBP4.79□□□□□ -1.64
TRIM56-201ENST00000306085 MT1GP13640 62 aa4.75□□□□□ -1.65
TRIM56-201ENST00000306085 MT1FP04733 61 aa4.75□□□□□ -1.65
TRIM56-201ENST00000306085 ANK3Q12955 4377 aaKnown RBP4.73□□□□□ -1.65
TRIM56-201ENST00000306085 SPRR2DP22532 72 aa4.73□□□□□ -1.65
TRIM56-201ENST00000306085 KRTAP19-4Q3LI73 84 aa4.7□□□□□ -1.66
TRIM56-201ENST00000306085 FRAS1Q86XX4 4008 aa4.7□□□□□ -1.66
TRIM56-201ENST00000306085 LCE2BO14633 110 aa4.69□□□□□ -1.66
TRIM56-201ENST00000306085 LCE3DQ9BYE3 92 aa4.69□□□□□ -1.66
TRIM56-201ENST00000306085 DNAH6Q9C0G6 4158 aa4.67□□□□□ -1.66
TRIM56-201ENST00000306085 LCE3EQ5T5B0 92 aa4.61□□□□□ -1.67
TRIM56-201ENST00000306085 SPRR5A0A1B0GTR4 108 aa4.51□□□□□ -1.69
TRIM56-201ENST00000306085 FLGP20930 4061 aaPredicted RBP4.48□□□□□ -1.69
TRIM56-201ENST00000306085 LCE2CQ5TA81 110 aa4.45□□□□□ -1.7
TRIM56-201ENST00000306085 DNAH10Q8IVF4 4471 aa4.44□□□□□ -1.7
TRIM56-201ENST00000306085 PRM1P04553 51 aa4.42□□□□□ -1.7
TRIM56-201ENST00000306085 MT1XP80297 61 aa4.41□□□□□ -1.7
TRIM56-201ENST00000306085 MT3P25713 68 aa4.37□□□□□ -1.71
TRIM56-201ENST00000306085 LCE2DQ5TA82 110 aaPredicted RBP4.35□□□□□ -1.71
TRIM56-201ENST00000306085 FAT2Q9NYQ8 4349 aa4.35□□□□□ -1.71
TRIM56-201ENST00000306085 KRTAP4-8A0A0G2JLE6 195 aa4.34□□□□□ -1.72
TRIM56-201ENST00000306085 KRTAP4-8Q9BYQ9 185 aa4.34□□□□□ -1.72
TRIM56-201ENST00000306085 DNAH11Q96DT5 4516 aa4.32□□□□□ -1.72
TRIM56-201ENST00000306085 MT4P47944 62 aa4.31□□□□□ -1.72
TRIM56-201ENST00000306085 DNAH8Q96JB1 4490 aa4.31□□□□□ -1.72
TRIM56-201ENST00000306085 DNAH17Q9UFH2 4485 aa4.31□□□□□ -1.72
TRIM56-201ENST00000306085 LCE1BQ5T7P3 118 aa4.3□□□□□ -1.72
TRIM56-201ENST00000306085 KRTAP19-8Q3LI54 63 aa4.3□□□□□ -1.72
TRIM56-201ENST00000306085 KRTAP19-1Q8IUB9 90 aa4.28□□□□□ -1.72
TRIM56-201ENST00000306085 LRP1Q07954 4544 aaKnown RBP4.28□□□□□ -1.72
TRIM56-201ENST00000306085 LCE1DQ5T752 114 aa4.26□□□□□ -1.73
TRIM56-201ENST00000306085 PRKDCP78527 4128 aaKnown RBP4.24□□□□□ -1.73
TRIM56-201ENST00000306085 PKHD1P08F94 4074 aa4.21□□□□□ -1.74
TRIM56-201ENST00000306085 KRTAP4-7Q9BYR0 210 aa4.18□□□□□ -1.74
TRIM56-201ENST00000306085 VPS13DQ5THJ4 4388 aa4.17□□□□□ -1.74
TRIM56-201ENST00000306085 KRTAP19-3Q7Z4W3 81 aa4.17□□□□□ -1.74
TRIM56-201ENST00000306085 DNAH9Q9NYC9 4486 aa4.14□□□□□ -1.75
TRIM56-201ENST00000306085 MT1BP07438 61 aa4.13□□□□□ -1.75
TRIM56-201ENST00000306085 MT1LQ93083 61 aa4.11□□□□□ -1.75
TRIM56-201ENST00000306085 DYNC2H1Q8NCM8 4307 aaKnown RBP4.11□□□□□ -1.75
TRIM56-201ENST00000306085 LOC100996750A0A140TA64 210 aa4.06□□□□□ -1.76
TRIM56-201ENST00000306085 PLECQ15149 4684 aaKnown RBP4.05□□□□□ -1.76
TRIM56-201ENST00000306085 DNAH5Q8TE73 4624 aa4.05□□□□□ -1.76
TRIM56-201ENST00000306085 PKHD1L1Q86WI1 4243 aa4.02□□□□□ -1.77
TRIM56-201ENST00000306085 STARD9Q9P2P6 4700 aa4.01□□□□□ -1.77
TRIM56-201ENST00000306085 KRTAP9-8Q9BYQ0 159 aa4.01□□□□□ -1.77
TRIM56-201ENST00000306085 LCE5AQ5TCM9 118 aa4.01□□□□□ -1.77
TRIM56-201ENST00000306085 MT1EP04732 61 aa3.99□□□□□ -1.77
TRIM56-201ENST00000306085 DNHD1Q96M86 4753 aa3.98□□□□□ -1.77
TRIM56-201ENST00000306085 FAT1Q14517 4588 aa3.97□□□□□ -1.77
TRIM56-201ENST00000306085 KRTAP9-3Q9BYQ3 159 aa3.95□□□□□ -1.78
TRIM56-201ENST00000306085 DYNC1H1Q14204 4646 aaKnown RBP3.95□□□□□ -1.78
TRIM56-201ENST00000306085 MT1MQ8N339 61 aa3.95□□□□□ -1.78
TRIM56-201ENST00000306085 KRTAP4-9Q9BYQ8 210 aa3.9□□□□□ -1.79
TRIM56-201ENST00000306085 KRTAP4-3Q9BYR4 195 aa3.89□□□□□ -1.79
TRIM56-201ENST00000306085 HSPG2P98160 4391 aa3.88□□□□□ -1.79
TRIM56-201ENST00000306085 LCE1CQ5T751 118 aa3.87□□□□□ -1.79
TRIM56-201ENST00000306085 LCE1EQ5T753 118 aa3.87□□□□□ -1.79
TRIM56-201ENST00000306085 LCE1FQ5T754 118 aa3.87□□□□□ -1.79
TRIM56-201ENST00000306085 LCE1AQ5T7P2 110 aa3.87□□□□□ -1.79
TRIM56-201ENST00000306085 PKD1P98161 4303 aa3.85□□□□□ -1.79
TRIM56-201ENST00000306085 APOBP04114 4563 aaKnown RBP3.84□□□□□ -1.79
TRIM56-201ENST00000306085 SACSQ9NZJ4 4579 aa3.8□□□□□ -1.8
TRIM56-201ENST00000306085 LRP1BQ9NZR2 4599 aa3.79□□□□□ -1.8
TRIM56-201ENST00000306085 FAT3Q8TDW7 4589 aa3.76□□□□□ -1.81
TRIM56-201ENST00000306085 KRTAP2-3P0C7H8 128 aa3.75□□□□□ -1.81
TRIM56-201ENST00000306085 KRTAP2-4Q9BYR9 128 aa3.75□□□□□ -1.81
TRIM56-201ENST00000306085 KRTAP2-1Q9BYU5 128 aa3.75□□□□□ -1.81
TRIM56-201ENST00000306085 KRTAP6-2Q3LI66 62 aa3.72□□□□□ -1.81
TRIM56-201ENST00000306085 KRTAP19-6Q3LI70 58 aa3.71□□□□□ -1.82
TRIM56-201ENST00000306085 LCE4AQ5TA78 99 aa3.69□□□□□ -1.82
TRIM56-201ENST00000306085 RYR2Q92736 4967 aa3.69□□□□□ -1.82
TRIM56-201ENST00000306085 KRTAP17-1Q9BYP8 105 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms