RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 AKAP9Q99996 3911 aa7.93□□□□□ -1.14
PCDH1-201ENST00000287008 ALMS1Q8TCU4 4167 aa7.9□□□□□ -1.14
PCDH1-201ENST00000287008 LORP23490 312 aaPredicted RBP7.88□□□□□ -1.15
PCDH1-201ENST00000287008 DNAH9Q9NYC9 4486 aa7.88□□□□□ -1.15
PCDH1-201ENST00000287008 KRTAP23-1A1A580 65 aa7.79□□□□□ -1.16
PCDH1-201ENST00000287008 LCE3AQ5TA76 89 aa7.79□□□□□ -1.16
PCDH1-201ENST00000287008 DNAH11Q96DT5 4516 aa7.78□□□□□ -1.16
PCDH1-201ENST00000287008 CSMD3Q7Z407 3707 aa7.78□□□□□ -1.16
PCDH1-201ENST00000287008 KRTAP4-1Q9BYQ7 146 aa7.76□□□□□ -1.17
PCDH1-201ENST00000287008 KRTAP8-1Q8IUC2 63 aa7.74□□□□□ -1.17
PCDH1-201ENST00000287008 FAT1Q14517 4588 aa7.7□□□□□ -1.18
PCDH1-201ENST00000287008 RYR1P21817 5038 aa7.7□□□□□ -1.18
PCDH1-201ENST00000287008 MT1HP80294 61 aa7.69□□□□□ -1.18
PCDH1-201ENST00000287008 DNAH1Q9P2D7 4330 aa7.67□□□□□ -1.18
PCDH1-201ENST00000287008 DNAH10Q8IVF4 4471 aa7.66□□□□□ -1.18
PCDH1-201ENST00000287008 DYNC1H1Q14204 4646 aaKnown RBP7.61□□□□□ -1.19
PCDH1-201ENST00000287008 MT2AP02795 61 aa7.59□□□□□ -1.19
PCDH1-201ENST00000287008 INE1O15225 51 aa7.56□□□□□ -1.2
PCDH1-201ENST00000287008 LRP1BQ9NZR2 4599 aa7.47□□□□□ -1.21
PCDH1-201ENST00000287008 SPRR2GQ9BYE4 73 aa7.47□□□□□ -1.21
PCDH1-201ENST00000287008 VPS13DQ5THJ4 4388 aa7.44□□□□□ -1.22
PCDH1-201ENST00000287008 SACSQ9NZJ4 4579 aa7.44□□□□□ -1.22
PCDH1-201ENST00000287008 MT1FP04733 61 aa7.41□□□□□ -1.22
PCDH1-201ENST00000287008 KIAA1109Q2LD37 5005 aa7.4□□□□□ -1.22
PCDH1-201ENST00000287008 DNAH8Q96JB1 4490 aa7.39□□□□□ -1.23
PCDH1-201ENST00000287008 DNAH17Q9UFH2 4485 aa7.38□□□□□ -1.23
PCDH1-201ENST00000287008 KRTAP10-5P60370 271 aa7.31□□□□□ -1.24
PCDH1-201ENST00000287008 DNAH2Q9P225 4427 aa7.29□□□□□ -1.24
PCDH1-201ENST00000287008 STARD9Q9P2P6 4700 aa7.29□□□□□ -1.24
PCDH1-201ENST00000287008 SPRR2FQ96RM1 72 aa7.25□□□□□ -1.25
PCDH1-201ENST00000287008 FAT2Q9NYQ8 4349 aa7.22□□□□□ -1.25
PCDH1-201ENST00000287008 RYR3Q15413 4870 aa7.21□□□□□ -1.25
PCDH1-201ENST00000287008 PRKDCP78527 4128 aaKnown RBP7.18□□□□□ -1.26
PCDH1-201ENST00000287008 APOBP04114 4563 aaKnown RBP7.16□□□□□ -1.26
PCDH1-201ENST00000287008 DYNC2H1Q8NCM8 4307 aaKnown RBP7.14□□□□□ -1.27
PCDH1-201ENST00000287008 KRTAP10-7P60409 375 aaPredicted RBP7.12□□□□□ -1.27
PCDH1-201ENST00000287008 ANK2Q01484 3957 aa7.11□□□□□ -1.27
PCDH1-201ENST00000287008 MYCBP2O75592 4640 aa7.09□□□□□ -1.27
PCDH1-201ENST00000287008 KRTAP17-1Q9BYP8 105 aa7.09□□□□□ -1.27
PCDH1-201ENST00000287008 KRTAP19-5Q3LI72 72 aa7.07□□□□□ -1.28
PCDH1-201ENST00000287008 VPS13BQ7Z7G8 4022 aa7.02□□□□□ -1.29
PCDH1-201ENST00000287008 KRTAP19-8Q3LI54 63 aa6.98□□□□□ -1.29
PCDH1-201ENST00000287008 KRTAP19-1Q8IUB9 90 aa6.98□□□□□ -1.29
PCDH1-201ENST00000287008 HERC2O95714 4834 aa6.97□□□□□ -1.29
PCDH1-201ENST00000287008 RYR2Q92736 4967 aa6.95□□□□□ -1.3
PCDH1-201ENST00000287008 LYSTQ99698 3801 aa6.94□□□□□ -1.3
PCDH1-201ENST00000287008 KRTAP19-4Q3LI73 84 aa6.94□□□□□ -1.3
PCDH1-201ENST00000287008 DNAH3Q8TD57 4116 aa6.92□□□□□ -1.3
PCDH1-201ENST00000287008 FAT3Q8TDW7 4589 aa6.9□□□□□ -1.31
PCDH1-201ENST00000287008 LCE3CQ5T5A8 94 aa6.88□□□□□ -1.31
PCDH1-201ENST00000287008 KMT2AQ03164 3969 aa6.86□□□□□ -1.31
PCDH1-201ENST00000287008 FRAS1Q86XX4 4008 aa6.85□□□□□ -1.31
PCDH1-201ENST00000287008 LRP1Q07954 4544 aaKnown RBP6.85□□□□□ -1.31
PCDH1-201ENST00000287008 BIRC6Q9NR09 4857 aa6.84□□□□□ -1.31
PCDH1-201ENST00000287008 CMYA5Q8N3K9 4069 aa6.83□□□□□ -1.32
PCDH1-201ENST00000287008 PCLOQ9Y6V0 5065 aa6.83□□□□□ -1.32
PCDH1-201ENST00000287008 SPRR2EP22531 72 aa6.78□□□□□ -1.32
PCDH1-201ENST00000287008 SPRR2BP35325 72 aa6.78□□□□□ -1.32
PCDH1-201ENST00000287008 SPRR2AP35326 72 aa6.78□□□□□ -1.32
PCDH1-201ENST00000287008 KRTAP9-8Q9BYQ0 159 aa6.77□□□□□ -1.33
PCDH1-201ENST00000287008 DNAH7Q8WXX0 4024 aa6.77□□□□□ -1.33
PCDH1-201ENST00000287008 MT1BP07438 61 aa6.73□□□□□ -1.33
PCDH1-201ENST00000287008 MT1XP80297 61 aa6.72□□□□□ -1.33
PCDH1-201ENST00000287008 HECTD4Q9Y4D8 3996 aa6.71□□□□□ -1.33
PCDH1-201ENST00000287008 HYDINQ4G0P3 5121 aa6.71□□□□□ -1.34
PCDH1-201ENST00000287008 LCE2CQ5TA81 110 aa6.67□□□□□ -1.34
PCDH1-201ENST00000287008 LRP2P98164 4655 aa6.67□□□□□ -1.34
PCDH1-201ENST00000287008 DNAH6Q9C0G6 4158 aa6.65□□□□□ -1.34
PCDH1-201ENST00000287008 EPPK1P58107 5090 aaKnown RBP6.65□□□□□ -1.34
PCDH1-201ENST00000287008 KRTAP9-3Q9BYQ3 159 aa6.62□□□□□ -1.35
PCDH1-201ENST00000287008 PKD1P98161 4303 aa6.62□□□□□ -1.35
PCDH1-201ENST00000287008 HERC1Q15751 4861 aa6.61□□□□□ -1.35
PCDH1-201ENST00000287008 SPRR2DP22532 72 aa6.56□□□□□ -1.36
PCDH1-201ENST00000287008 LCE2BO14633 110 aa6.55□□□□□ -1.36
PCDH1-201ENST00000287008 KRTAP4-8A0A0G2JLE6 195 aa6.51□□□□□ -1.37
PCDH1-201ENST00000287008 KRTAP4-8Q9BYQ9 185 aa6.51□□□□□ -1.37
PCDH1-201ENST00000287008 MT1GP13640 62 aa6.51□□□□□ -1.37
PCDH1-201ENST00000287008 SYNE1Q8NF91 8797 aaKnown RBP6.49□□□□□ -1.37
PCDH1-201ENST00000287008 KRTAP12-4P60329 112 aa6.44□□□□□ -1.38
PCDH1-201ENST00000287008 LCE3BQ5TA77 95 aa6.41□□□□□ -1.38
PCDH1-201ENST00000287008 HSPG2P98160 4391 aa6.4□□□□□ -1.38
PCDH1-201ENST00000287008 KRTAP19-2Q3LHN2 52 aa6.33□□□□□ -1.4
PCDH1-201ENST00000287008 ABCA13Q86UQ4 5058 aa6.31□□□□□ -1.4
PCDH1-201ENST00000287008 PKHD1P08F94 4074 aa6.29□□□□□ -1.4
PCDH1-201ENST00000287008 UBR4Q5T4S7 5183 aa6.27□□□□□ -1.41
PCDH1-201ENST00000287008 PKHD1L1Q86WI1 4243 aa6.26□□□□□ -1.41
PCDH1-201ENST00000287008 KRTAP19-3Q7Z4W3 81 aa6.24□□□□□ -1.41
PCDH1-201ENST00000287008 KMT2CQ8NEZ4 4911 aaKnown RBP6.21□□□□□ -1.42
PCDH1-201ENST00000287008 KRTAP9-2Q9BYQ4 174 aa6.15□□□□□ -1.42
PCDH1-201ENST00000287008 FSIP2Q5CZC0 6907 aa6.13□□□□□ -1.43
PCDH1-201ENST00000287008 MUC17Q685J3 4493 aa6.13□□□□□ -1.43
PCDH1-201ENST00000287008 MT1LQ93083 61 aa6.11□□□□□ -1.43
PCDH1-201ENST00000287008 LPAP08519 4548 aa6.1□□□□□ -1.43
PCDH1-201ENST00000287008 MT1EP04732 61 aa6.1□□□□□ -1.43
PCDH1-201ENST00000287008 KRTAP19-6Q3LI70 58 aa6.09□□□□□ -1.43
PCDH1-201ENST00000287008 LCE3DQ9BYE3 92 aa6.05□□□□□ -1.44
PCDH1-201ENST00000287008 SPRR5A0A1B0GTR4 108 aa6.05□□□□□ -1.44
PCDH1-201ENST00000287008 LCE2DQ5TA82 110 aaPredicted RBP6.04□□□□□ -1.44
PCDH1-201ENST00000287008 KRTAP4-7Q9BYR0 210 aa6.01□□□□□ -1.45
PCDH1-201ENST00000287008 LCE2AQ5TA79 106 aaPredicted RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms