RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 DNAH17Q9UFH2 4485 aa2.19□□□□□ -2.06
VPS13C-201ENST00000249837 VPS13DQ5THJ4 4388 aa2.19□□□□□ -2.06
VPS13C-201ENST00000249837 DNAH11Q96DT5 4516 aa2.19□□□□□ -2.06
VPS13C-201ENST00000249837 PRKDCP78527 4128 aaKnown RBP2.19□□□□□ -2.06
VPS13C-201ENST00000249837 MT1HL1P0DM35 61 aa2.18□□□□□ -2.06
VPS13C-201ENST00000249837 DNAH7Q8WXX0 4024 aa2.18□□□□□ -2.06
VPS13C-201ENST00000249837 KMT2AQ03164 3969 aa2.17□□□□□ -2.06
VPS13C-201ENST00000249837 KRTAP10-10P60014 251 aa2.16□□□□□ -2.06
VPS13C-201ENST00000249837 ANK2Q01484 3957 aa2.16□□□□□ -2.06
VPS13C-201ENST00000249837 PLECQ15149 4684 aaKnown RBP2.15□□□□□ -2.06
VPS13C-201ENST00000249837 KRTAP15-1Q3LI76 137 aa2.15□□□□□ -2.07
VPS13C-201ENST00000249837 DNAH8Q96JB1 4490 aa2.13□□□□□ -2.07
VPS13C-201ENST00000249837 DYNC2H1Q8NCM8 4307 aaKnown RBP2.11□□□□□ -2.07
VPS13C-201ENST00000249837 KRTAP4-5Q9BYR2 181 aa2.11□□□□□ -2.07
VPS13C-201ENST00000249837 VPS13BQ7Z7G8 4022 aa2.09□□□□□ -2.08
VPS13C-201ENST00000249837 DNAH5Q8TE73 4624 aa2.09□□□□□ -2.08
VPS13C-201ENST00000249837 DNAH6Q9C0G6 4158 aa2.08□□□□□ -2.08
VPS13C-201ENST00000249837 LORP23490 312 aaPredicted RBP2.08□□□□□ -2.08
VPS13C-201ENST00000249837 FAT2Q9NYQ8 4349 aa2.07□□□□□ -2.08
VPS13C-201ENST00000249837 MYCBP2O75592 4640 aa2.06□□□□□ -2.08
VPS13C-201ENST00000249837 STARD9Q9P2P6 4700 aa2.05□□□□□ -2.08
VPS13C-201ENST00000249837 FAT1Q14517 4588 aa2.05□□□□□ -2.08
VPS13C-201ENST00000249837 LRP1BQ9NZR2 4599 aa2.04□□□□□ -2.08
VPS13C-201ENST00000249837 DNHD1Q96M86 4753 aa2.03□□□□□ -2.08
VPS13C-201ENST00000249837 KRTAP4-1Q9BYQ7 146 aa2.03□□□□□ -2.08
VPS13C-201ENST00000249837 KRTAP17-1Q9BYP8 105 aa2.01□□□□□ -2.09
VPS13C-201ENST00000249837 PRO2289Q9P1D8 64 aa2□□□□□ -2.09
VPS13C-201ENST00000249837 FRAS1Q86XX4 4008 aa2□□□□□ -2.09
VPS13C-201ENST00000249837 SACSQ9NZJ4 4579 aa2□□□□□ -2.09
VPS13C-201ENST00000249837 DYNC1H1Q14204 4646 aaKnown RBP1.99□□□□□ -2.09
VPS13C-201ENST00000249837 APOBP04114 4563 aaKnown RBP1.97□□□□□ -2.09
VPS13C-201ENST00000249837 LRP1Q07954 4544 aaKnown RBP1.94□□□□□ -2.1
VPS13C-201ENST00000249837 LCE3AQ5TA76 89 aa1.94□□□□□ -2.1
VPS13C-201ENST00000249837 KRTAP12-3P60328 96 aa1.92□□□□□ -2.1
VPS13C-201ENST00000249837 KRTAP10-12P60413 245 aa1.91□□□□□ -2.1
VPS13C-201ENST00000249837 PKD1P98161 4303 aa1.9□□□□□ -2.1
VPS13C-201ENST00000249837 KRTAP23-1A1A580 65 aa1.89□□□□□ -2.11
VPS13C-201ENST00000249837 PKHD1P08F94 4074 aa1.89□□□□□ -2.11
VPS13C-201ENST00000249837 RYR1P21817 5038 aa1.88□□□□□ -2.11
VPS13C-201ENST00000249837 PKHD1L1Q86WI1 4243 aa1.87□□□□□ -2.11
VPS13C-201ENST00000249837 MT2AP02795 61 aa1.87□□□□□ -2.11
VPS13C-201ENST00000249837 INE1O15225 51 aa1.86□□□□□ -2.11
VPS13C-201ENST00000249837 FLGP20930 4061 aaPredicted RBP1.86□□□□□ -2.11
VPS13C-201ENST00000249837 FAT3Q8TDW7 4589 aa1.85□□□□□ -2.11
VPS13C-201ENST00000249837 MT1FP04733 61 aa1.85□□□□□ -2.11
VPS13C-201ENST00000249837 TNXBP22105 4242 aa1.85□□□□□ -2.11
VPS13C-201ENST00000249837 HSPG2P98160 4391 aa1.84□□□□□ -2.12
VPS13C-201ENST00000249837 SPRR2GQ9BYE4 73 aa1.83□□□□□ -2.12
VPS13C-201ENST00000249837 KRTAP19-1Q8IUB9 90 aa1.82□□□□□ -2.12
VPS13C-201ENST00000249837 MT1HP80294 61 aa1.82□□□□□ -2.12
VPS13C-201ENST00000249837 CRCT1Q9UGL9 99 aa1.81□□□□□ -2.12
VPS13C-201ENST00000249837 LRP2P98164 4655 aa1.8□□□□□ -2.12
VPS13C-201ENST00000249837 KRTAP8-1Q8IUC2 63 aa1.79□□□□□ -2.12
VPS13C-201ENST00000249837 KRTAP19-5Q3LI72 72 aa1.77□□□□□ -2.13
VPS13C-201ENST00000249837 LCE2CQ5TA81 110 aa1.76□□□□□ -2.13
VPS13C-201ENST00000249837 KRTAP19-2Q3LHN2 52 aa1.75□□□□□ -2.13
VPS13C-201ENST00000249837 LPAP08519 4548 aa1.75□□□□□ -2.13
VPS13C-201ENST00000249837 KRTAP10-7P60409 375 aaPredicted RBP1.75□□□□□ -2.13
VPS13C-201ENST00000249837 KIAA1109Q2LD37 5005 aa1.74□□□□□ -2.13
VPS13C-201ENST00000249837 KRTAP19-8Q3LI54 63 aa1.74□□□□□ -2.13
VPS13C-201ENST00000249837 MT1XP80297 61 aa1.73□□□□□ -2.13
VPS13C-201ENST00000249837 SPRR5A0A1B0GTR4 108 aa1.73□□□□□ -2.13
VPS13C-201ENST00000249837 RYR3Q15413 4870 aa1.73□□□□□ -2.13
VPS13C-201ENST00000249837 KRTAP10-5P60370 271 aa1.73□□□□□ -2.13
VPS13C-201ENST00000249837 MUC17Q685J3 4493 aa1.72□□□□□ -2.13
VPS13C-201ENST00000249837 MT1BP07438 61 aa1.71□□□□□ -2.14
VPS13C-201ENST00000249837 LCE3CQ5T5A8 94 aa1.71□□□□□ -2.14
VPS13C-201ENST00000249837 HYDINQ4G0P3 5121 aa1.7□□□□□ -2.14
VPS13C-201ENST00000249837 KRTAP9-8Q9BYQ0 159 aa1.7□□□□□ -2.14
VPS13C-201ENST00000249837 RYR2Q92736 4967 aa1.67□□□□□ -2.14
VPS13C-201ENST00000249837 KMT2CQ8NEZ4 4911 aaKnown RBP1.66□□□□□ -2.14
VPS13C-201ENST00000249837 KRTAP9-3Q9BYQ3 159 aa1.65□□□□□ -2.14
VPS13C-201ENST00000249837 KRTAP4-8A0A0G2JLE6 195 aa1.62□□□□□ -2.15
VPS13C-201ENST00000249837 KRTAP4-8Q9BYQ9 185 aa1.62□□□□□ -2.15
VPS13C-201ENST00000249837 LCE2BO14633 110 aa1.61□□□□□ -2.15
VPS13C-201ENST00000249837 KRTAP4-7Q9BYR0 210 aa1.6□□□□□ -2.15
VPS13C-201ENST00000249837 HERC2O95714 4834 aa1.59□□□□□ -2.15
VPS13C-201ENST00000249837 MT1GP13640 62 aa1.58□□□□□ -2.16
VPS13C-201ENST00000249837 SPRR2FQ96RM1 72 aa1.57□□□□□ -2.16
VPS13C-201ENST00000249837 MT1LQ93083 61 aa1.56□□□□□ -2.16
VPS13C-201ENST00000249837 HERC1Q15751 4861 aa1.56□□□□□ -2.16
VPS13C-201ENST00000249837 LCE3BQ5TA77 95 aa1.55□□□□□ -2.16
VPS13C-201ENST00000249837 PCLOQ9Y6V0 5065 aa1.55□□□□□ -2.16
VPS13C-201ENST00000249837 MT1EP04732 61 aa1.55□□□□□ -2.16
VPS13C-201ENST00000249837 KRTAP12-4P60329 112 aa1.54□□□□□ -2.16
VPS13C-201ENST00000249837 KRTAP4-3Q9BYR4 195 aa1.53□□□□□ -2.16
VPS13C-201ENST00000249837 SYNE1Q8NF91 8797 aaKnown RBP1.53□□□□□ -2.16
VPS13C-201ENST00000249837 LOC100996750A0A140TA64 210 aa1.52□□□□□ -2.17
VPS13C-201ENST00000249837 SYNE2Q8WXH0 6885 aaKnown RBP1.52□□□□□ -2.17
VPS13C-201ENST00000249837 KRTAP19-4Q3LI73 84 aa1.51□□□□□ -2.17
VPS13C-201ENST00000249837 KRTAP9-6A8MVA2 160 aa1.5□□□□□ -2.17
VPS13C-201ENST00000249837 BIRC6Q9NR09 4857 aa1.49□□□□□ -2.17
VPS13C-201ENST00000249837 KRTAP19-7Q3SYF9 63 aa1.49□□□□□ -2.17
VPS13C-201ENST00000249837 HMCN2Q8NDA2 5059 aa1.49□□□□□ -2.17
VPS13C-201ENST00000249837 EPPK1P58107 5090 aaKnown RBP1.48□□□□□ -2.17
VPS13C-201ENST00000249837 KRTAP19-3Q7Z4W3 81 aa1.47□□□□□ -2.17
VPS13C-201ENST00000249837 MT1MQ8N339 61 aa1.46□□□□□ -2.18
VPS13C-201ENST00000249837 KRTAP2-3P0C7H8 128 aa1.45□□□□□ -2.18
VPS13C-201ENST00000249837 KRTAP2-4Q9BYR9 128 aa1.45□□□□□ -2.18
VPS13C-201ENST00000249837 KRTAP2-1Q9BYU5 128 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms