RNA–Protein interactions for RNA: ENST00000219837.11

KNOP1-201, Transcript of lysine rich nucleolar protein 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene KNOP1, Length 6,432 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KNOP1-201ENST00000219837 KRTAP4-1Q9BYQ7 146 aa4.42□□□□□ -1.7
KNOP1-201ENST00000219837 SPRR2FQ96RM1 72 aa4.39□□□□□ -1.71
KNOP1-201ENST00000219837 KRTAP10-7P60409 375 aaPredicted RBP4.37□□□□□ -1.71
KNOP1-201ENST00000219837 CMYA5Q8N3K9 4069 aa4.37□□□□□ -1.71
KNOP1-201ENST00000219837 DNAH7Q8WXX0 4024 aa4.36□□□□□ -1.71
KNOP1-201ENST00000219837 CUBNO60494 3623 aa4.35□□□□□ -1.71
KNOP1-201ENST00000219837 MUC3AQ02505 3323 aa4.34□□□□□ -1.72
KNOP1-201ENST00000219837 DNAH11Q96DT5 4516 aa4.34□□□□□ -1.72
KNOP1-201ENST00000219837 MT2AP02795 61 aa4.33□□□□□ -1.72
KNOP1-201ENST00000219837 KRTAP19-5Q3LI72 72 aa4.33□□□□□ -1.72
KNOP1-201ENST00000219837 OTOGQ6ZRI0 2925 aa4.32□□□□□ -1.72
KNOP1-201ENST00000219837 DNAH6Q9C0G6 4158 aa4.32□□□□□ -1.72
KNOP1-201ENST00000219837 VWFP04275 2813 aa4.32□□□□□ -1.72
KNOP1-201ENST00000219837 DNAH10Q8IVF4 4471 aa4.32□□□□□ -1.72
KNOP1-201ENST00000219837 FAT2Q9NYQ8 4349 aa4.32□□□□□ -1.72
KNOP1-201ENST00000219837 CSMD3Q7Z407 3707 aa4.3□□□□□ -1.72
KNOP1-201ENST00000219837 PKD1L1Q8TDX9 2849 aa4.27□□□□□ -1.73
KNOP1-201ENST00000219837 MEGF8Q7Z7M0 2845 aa4.26□□□□□ -1.73
KNOP1-201ENST00000219837 SPRR2GQ9BYE4 73 aa4.26□□□□□ -1.73
KNOP1-201ENST00000219837 MT1FP04733 61 aa4.25□□□□□ -1.73
KNOP1-201ENST00000219837 ANK2Q01484 3957 aa4.25□□□□□ -1.73
KNOP1-201ENST00000219837 DNAH17Q9UFH2 4485 aa4.25□□□□□ -1.73
KNOP1-201ENST00000219837 PRKDCP78527 4128 aaKnown RBP4.25□□□□□ -1.73
KNOP1-201ENST00000219837 SPRR2EP22531 72 aa4.23□□□□□ -1.73
KNOP1-201ENST00000219837 SPRR2BP35325 72 aa4.23□□□□□ -1.73
KNOP1-201ENST00000219837 SPRR2AP35326 72 aa4.23□□□□□ -1.73
KNOP1-201ENST00000219837 LCE3CQ5T5A8 94 aa4.23□□□□□ -1.73
KNOP1-201ENST00000219837 DYNC2H1Q8NCM8 4307 aaKnown RBP4.23□□□□□ -1.73
KNOP1-201ENST00000219837 DNAH8Q96JB1 4490 aa4.23□□□□□ -1.73
KNOP1-201ENST00000219837 VPS13DQ5THJ4 4388 aa4.22□□□□□ -1.73
KNOP1-201ENST00000219837 FRAS1Q86XX4 4008 aa4.21□□□□□ -1.74
KNOP1-201ENST00000219837 FBN3Q75N90 2809 aa4.2□□□□□ -1.74
KNOP1-201ENST00000219837 ZNF469Q96JG9 3925 aaPredicted RBP4.18□□□□□ -1.74
KNOP1-201ENST00000219837 LCE2DQ5TA82 110 aaPredicted RBP4.17□□□□□ -1.74
KNOP1-201ENST00000219837 PLECQ15149 4684 aaKnown RBP4.16□□□□□ -1.74
KNOP1-201ENST00000219837 DNAH5Q8TE73 4624 aa4.16□□□□□ -1.74
KNOP1-201ENST00000219837 SPRR2DP22532 72 aa4.1□□□□□ -1.75
KNOP1-201ENST00000219837 LCE2CQ5TA81 110 aa4.1□□□□□ -1.75
KNOP1-201ENST00000219837 KMT2AQ03164 3969 aa4.09□□□□□ -1.75
KNOP1-201ENST00000219837 VPS13BQ7Z7G8 4022 aa4.08□□□□□ -1.76
KNOP1-201ENST00000219837 DYNC1H1Q14204 4646 aaKnown RBP4.08□□□□□ -1.76
KNOP1-201ENST00000219837 LCE3BQ5TA77 95 aa4.07□□□□□ -1.76
KNOP1-201ENST00000219837 SACSQ9NZJ4 4579 aa4.06□□□□□ -1.76
KNOP1-201ENST00000219837 STARD9Q9P2P6 4700 aa4.05□□□□□ -1.76
KNOP1-201ENST00000219837 LRP1BQ9NZR2 4599 aa4.04□□□□□ -1.76
KNOP1-201ENST00000219837 LCE2BO14633 110 aa4□□□□□ -1.77
KNOP1-201ENST00000219837 COL7A1Q02388 2944 aa3.99□□□□□ -1.77
KNOP1-201ENST00000219837 MT1GP13640 62 aa3.98□□□□□ -1.77
KNOP1-201ENST00000219837 KRTAP19-4Q3LI73 84 aa3.92□□□□□ -1.78
KNOP1-201ENST00000219837 HECTD4Q9Y4D8 3996 aa3.91□□□□□ -1.78
KNOP1-201ENST00000219837 SRRM2Q9UQ35 2752 aaKnown RBP3.88□□□□□ -1.79
KNOP1-201ENST00000219837 MT1XP80297 61 aa3.88□□□□□ -1.79
KNOP1-201ENST00000219837 KRTAP12-4P60329 112 aa3.88□□□□□ -1.79
KNOP1-201ENST00000219837 KRTAP19-8Q3LI54 63 aa3.88□□□□□ -1.79
KNOP1-201ENST00000219837 APOBP04114 4563 aaKnown RBP3.86□□□□□ -1.79
KNOP1-201ENST00000219837 PKHD1L1Q86WI1 4243 aa3.85□□□□□ -1.79
KNOP1-201ENST00000219837 LYSTQ99698 3801 aa3.85□□□□□ -1.79
KNOP1-201ENST00000219837 FAT3Q8TDW7 4589 aa3.84□□□□□ -1.79
KNOP1-201ENST00000219837 KRTAP19-1Q8IUB9 90 aa3.83□□□□□ -1.8
KNOP1-201ENST00000219837 FAT1Q14517 4588 aa3.82□□□□□ -1.8
KNOP1-201ENST00000219837 KRTAP17-1Q9BYP8 105 aa3.8□□□□□ -1.8
KNOP1-201ENST00000219837 KRTAP4-8A0A0G2JLE6 195 aa3.79□□□□□ -1.8
KNOP1-201ENST00000219837 KRTAP4-8Q9BYQ9 185 aa3.79□□□□□ -1.8
KNOP1-201ENST00000219837 MT1BP07438 61 aa3.77□□□□□ -1.81
KNOP1-201ENST00000219837 PKD1P98161 4303 aa3.77□□□□□ -1.81
KNOP1-201ENST00000219837 LCE2AQ5TA79 106 aaPredicted RBP3.76□□□□□ -1.81
KNOP1-201ENST00000219837 KRTAP9-8Q9BYQ0 159 aa3.75□□□□□ -1.81
KNOP1-201ENST00000219837 LCE3DQ9BYE3 92 aa3.72□□□□□ -1.81
KNOP1-201ENST00000219837 MUC17Q685J3 4493 aa3.72□□□□□ -1.81
KNOP1-201ENST00000219837 HSPG2P98160 4391 aa3.71□□□□□ -1.82
KNOP1-201ENST00000219837 KRTAP9-3Q9BYQ3 159 aa3.69□□□□□ -1.82
KNOP1-201ENST00000219837 TNXBP22105 4242 aa3.66□□□□□ -1.82
KNOP1-201ENST00000219837 LRP1Q07954 4544 aaKnown RBP3.64□□□□□ -1.83
KNOP1-201ENST00000219837 MT4P47944 62 aa3.64□□□□□ -1.83
KNOP1-201ENST00000219837 LCE3EQ5T5B0 92 aa3.63□□□□□ -1.83
KNOP1-201ENST00000219837 PKHD1P08F94 4074 aa3.63□□□□□ -1.83
KNOP1-201ENST00000219837 HERC1Q15751 4861 aa3.62□□□□□ -1.83
KNOP1-201ENST00000219837 KRTAP19-3Q7Z4W3 81 aa3.62□□□□□ -1.83
KNOP1-201ENST00000219837 LPAP08519 4548 aa3.61□□□□□ -1.83
KNOP1-201ENST00000219837 KRTAP4-7Q9BYR0 210 aa3.59□□□□□ -1.84
KNOP1-201ENST00000219837 RYR3Q15413 4870 aa3.56□□□□□ -1.84
KNOP1-201ENST00000219837 RYR1P21817 5038 aa3.54□□□□□ -1.84
KNOP1-201ENST00000219837 MT1LQ93083 61 aa3.54□□□□□ -1.84
KNOP1-201ENST00000219837 MT1EP04732 61 aa3.5□□□□□ -1.85
KNOP1-201ENST00000219837 SPRR5A0A1B0GTR4 108 aa3.48□□□□□ -1.85
KNOP1-201ENST00000219837 DNHD1Q96M86 4753 aa3.48□□□□□ -1.85
KNOP1-201ENST00000219837 LOC100996750A0A140TA64 210 aa3.47□□□□□ -1.85
KNOP1-201ENST00000219837 FLGP20930 4061 aaPredicted RBP3.47□□□□□ -1.85
KNOP1-201ENST00000219837 MYCBP2O75592 4640 aa3.47□□□□□ -1.85
KNOP1-201ENST00000219837 KRTAP9-2Q9BYQ4 174 aa3.46□□□□□ -1.86
KNOP1-201ENST00000219837 LCE1BQ5T7P3 118 aa3.46□□□□□ -1.86
KNOP1-201ENST00000219837 PRM1P04553 51 aa3.44□□□□□ -1.86
KNOP1-201ENST00000219837 MT3P25713 68 aa3.44□□□□□ -1.86
KNOP1-201ENST00000219837 MT1MQ8N339 61 aa3.43□□□□□ -1.86
KNOP1-201ENST00000219837 LCE1DQ5T752 114 aa3.42□□□□□ -1.86
KNOP1-201ENST00000219837 KRTAP4-3Q9BYR4 195 aa3.39□□□□□ -1.87
KNOP1-201ENST00000219837 KRTAP19-6Q3LI70 58 aa3.35□□□□□ -1.87
KNOP1-201ENST00000219837 RYR2Q92736 4967 aa3.33□□□□□ -1.88
KNOP1-201ENST00000219837 HYDINQ4G0P3 5121 aa3.32□□□□□ -1.88
KNOP1-201ENST00000219837 KRTAP9-6A0A140TA67 174 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms