RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 4930474N05RikQ8BVR5 218 aa12.72□□□□□ -0.37
Shh-201ENSMUST00000002708 Mcrip2Q9CQB2 160 aaKnown RBP12.72□□□□□ -0.37
Shh-201ENSMUST00000002708 Sdk1Q3UH53 2193 aa12.72□□□□□ -0.37
Shh-201ENSMUST00000002708 Sptan1P16546 2472 aaKnown RBP12.72□□□□□ -0.37
Shh-201ENSMUST00000002708 Q3UNZ8 350 aa12.72□□□□□ -0.37
Shh-201ENSMUST00000002708 Slc35d2Q762D5 326 aa12.72□□□□□ -0.37
Shh-201ENSMUST00000002708 Snx22Q8C084 192 aa12.72□□□□□ -0.37
Shh-201ENSMUST00000002708 F930015N05RikQ8C3A3 210 aa12.72□□□□□ -0.37
Shh-201ENSMUST00000002708 Aqp6Q8C4A0 293 aa12.72□□□□□ -0.37
Shh-201ENSMUST00000002708 QrfpQ8CE23 124 aa12.72□□□□□ -0.37
Shh-201ENSMUST00000002708 Mrpl33Q9CQP0 65 aa12.71□□□□□ -0.37
Shh-201ENSMUST00000002708 Igkv4-57A0A0A6YYE7 117 aa12.71□□□□□ -0.37
Shh-201ENSMUST00000002708 TgfaP48030 159 aa12.71□□□□□ -0.37
Shh-201ENSMUST00000002708 Sh3bgrl2Q8BG73 107 aa12.71□□□□□ -0.37
Shh-201ENSMUST00000002708 Wfdc2Q9DAU7 174 aa12.71□□□□□ -0.37
Shh-201ENSMUST00000002708 Lrrk2Q5S006 2527 aa12.71□□□□□ -0.38
Shh-201ENSMUST00000002708 Sertad4A7DTG3 377 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Vmn1r197Q8R265 298 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Prr23a3Q9CWP9 254 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Rabac1Q9Z0S9 185 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Prrc2aQ7TSC1 2158 aaKnown RBP12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Col6a4A2AX52 2309 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Tmem141A2AJB2 108 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Amn1B8JKV0 258 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Smad7O35253 426 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Tnfrsf9P20334 256 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 FshbQ60687 130 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Olfr1431Q8VF59 312 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Fxyd7P59648 80 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Ripply2Q2WG76 128 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Vwc2lQ505H4 222 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 D630044L22RikQ8C701 164 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Olfr810Q8VFH9 312 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 CtrlQ9ER05 264 aa12.7□□□□□ -0.38
Shh-201ENSMUST00000002708 Pla2g2cP48076 150 aa12.69□□□□□ -0.38
Shh-201ENSMUST00000002708 Rnf185Q91YT2 192 aa12.69□□□□□ -0.38
Shh-201ENSMUST00000002708 Ighv2-6A0A075B6A7 116 aa12.69□□□□□ -0.38
Shh-201ENSMUST00000002708 Ebi3O35228 228 aa12.69□□□□□ -0.38
Shh-201ENSMUST00000002708 Defb30Q30KN4 75 aa12.69□□□□□ -0.38
Shh-201ENSMUST00000002708 Spint3Q3UW09 88 aa12.69□□□□□ -0.38
Shh-201ENSMUST00000002708 Tmem210Q9D2F0 147 aa12.69□□□□□ -0.38
Shh-201ENSMUST00000002708 Ighv1-20A0A0A6YX66 117 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 P01756 117 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 P01757 117 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Mtatp8P03930 67 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Sub1P11031 127 aaKnown RBP12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Gata3P23772 443 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Defa-rs7P50715 91 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Bsph2Q0Q236 131 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Tmem11Q8BK08 190 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Olfr365Q8VFT2 312 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Slc25a20Q9Z2Z6 301 aaKnown RBP12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Gm12057A0A087WR21 115 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Pla2g2dQ9WVF6 144 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Fam208bQ5DTT3 2382 aa12.68□□□□□ -0.38
Shh-201ENSMUST00000002708 Defa26Q3L180 93 aa12.67□□□□□ -0.38
Shh-201ENSMUST00000002708 Pxt1Q8K459 51 aa12.67□□□□□ -0.38
Shh-201ENSMUST00000002708 Atp6v0e1Q9CQD8 81 aa12.67□□□□□ -0.38
Shh-201ENSMUST00000002708 Dusp14Q9JLY7 198 aa12.67□□□□□ -0.38
Shh-201ENSMUST00000002708 Pkd1l2Q7TN88 2461 aa12.67□□□□□ -0.38
Shh-201ENSMUST00000002708 Zfand3Q497H0 227 aa12.67□□□□□ -0.38
Shh-201ENSMUST00000002708 ManfQ9CXI5 179 aaKnown RBP12.67□□□□□ -0.38
Shh-201ENSMUST00000002708 Sec11aQ9R0P6 179 aa12.67□□□□□ -0.38
Shh-201ENSMUST00000002708 Pde6hP61249 83 aa12.66□□□□□ -0.38
Shh-201ENSMUST00000002708 Stxbp6Q8R3T5 210 aa12.66□□□□□ -0.38
Shh-201ENSMUST00000002708 Dopey2Q3UHQ6 2295 aa12.66□□□□□ -0.38
Shh-201ENSMUST00000002708 Gm9195A0A140LHT4 2805 aa12.66□□□□□ -0.38
Shh-201ENSMUST00000002708 Gp9O88186 177 aa12.66□□□□□ -0.38
Shh-201ENSMUST00000002708 Gm6525A0A0A6YW33 106 aa12.66□□□□□ -0.38
Shh-201ENSMUST00000002708 Minos1Q7TNS2 76 aa12.65□□□□□ -0.38
Shh-201ENSMUST00000002708 Prima1Q810F0 153 aa12.65□□□□□ -0.38
Shh-201ENSMUST00000002708 Tmem97Q8VD00 176 aa12.65□□□□□ -0.38
Shh-201ENSMUST00000002708 Olfr873Q8VFJ0 319 aa12.65□□□□□ -0.38
Shh-201ENSMUST00000002708 Ighv5-8A0A075B676 92 aa12.64□□□□□ -0.39
Shh-201ENSMUST00000002708 Ighv1-77A0A0G2JGS9 117 aa12.64□□□□□ -0.39
Shh-201ENSMUST00000002708 1520401A03RikA0A0J9YVH6 598 aa12.64□□□□□ -0.39
Shh-201ENSMUST00000002708 Tmem8bB1AWJ5 472 aa12.64□□□□□ -0.39
Shh-201ENSMUST00000002708 Igsf23B2RTN2 239 aa12.64□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm33815A0A087WNV3 176 aa12.64□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm29644A0A087WPG2 191 aa12.64□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm17727E9Q4V7 109 aa12.64□□□□□ -0.39
Shh-201ENSMUST00000002708 P01794 123 aa12.64□□□□□ -0.39
Shh-201ENSMUST00000002708 Adrb3P25962 400 aa12.64□□□□□ -0.39
Shh-201ENSMUST00000002708 Ttc28Q80XJ3 2450 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Trav21-dv12A0A075B6C4 109 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm10036E9PYL9 178 aaKnown RBP12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Casp6O08738 276 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm5150Q1AN92 299 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Igkv4-81A0A0G2JEY5 119 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Itgb1bp1O35671 200 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Ube2e1P52482 193 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Prrx2Q06348 247 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Olfr322Q5NCC8 327 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Olfr317Q5NCD6 327 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Odf3l1Q810P2 275 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Tmem89Q9DA04 169 aa12.63□□□□□ -0.39
Shh-201ENSMUST00000002708 Trav14-2A0A075B694 121 aa12.62□□□□□ -0.39
Shh-201ENSMUST00000002708 Fgf6P21658 208 aa12.62□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm12888Q3UW77 119 aa12.62□□□□□ -0.39
Shh-201ENSMUST00000002708 Lypd1Q8BLC3 141 aa12.62□□□□□ -0.39
Retrieved 100 of 22,080 RNA–protein pairs in 48.9 ms