RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 COX6CP09669 75 aa9.67□□□□□ -0.86
CLN3-262ENST00000637699 A0A1W2PPM0 123 aa9.65□□□□□ -0.86
CLN3-262ENST00000637699 ANKRD29Q8N6D5 301 aa9.65□□□□□ -0.86
CLN3-262ENST00000637699 H3BQ85 93 aa9.64□□□□□ -0.87
CLN3-262ENST00000637699 TMEM256-PLSCR3K7ERE1 68 aa9.64□□□□□ -0.87
CLN3-262ENST00000637699 LYRM7Q5U5X0 104 aa9.64□□□□□ -0.87
CLN3-262ENST00000637699 GTF2H5Q6ZYL4 71 aa9.64□□□□□ -0.87
CLN3-262ENST00000637699 SIGMAR1Q99720 223 aa9.63□□□□□ -0.87
CLN3-262ENST00000637699 RBM12B-AS1Q9P1G2 102 aa9.63□□□□□ -0.87
CLN3-262ENST00000637699 UBE2V1Q13404 147 aa9.62□□□□□ -0.87
CLN3-262ENST00000637699 TRBV7-4A0A0J9YYF1 115 aa9.61□□□□□ -0.87
CLN3-262ENST00000637699 HRES1P13985 223 aa9.6□□□□□ -0.87
CLN3-262ENST00000637699 MPLKIPQ8TAP9 179 aa9.6□□□□□ -0.87
CLN3-262ENST00000637699 K7EP34 96 aa9.59□□□□□ -0.87
CLN3-262ENST00000637699 LINC00313P59037 77 aa9.59□□□□□ -0.87
CLN3-262ENST00000637699 NAA38Q9BRA0 125 aaKnown RBP9.59□□□□□ -0.87
CLN3-262ENST00000637699 SPCS1Q9Y6A9 102 aa9.59□□□□□ -0.87
CLN3-262ENST00000637699 TRACP01848 142 aa9.58□□□□□ -0.88
CLN3-262ENST00000637699 SCGB1C2P0DMR2 95 aa9.58□□□□□ -0.88
CLN3-262ENST00000637699 CCKP06307 115 aa9.56□□□□□ -0.88
CLN3-262ENST00000637699 IGKV4-1P06312 121 aa9.54□□□□□ -0.88
CLN3-262ENST00000637699 DEFB116Q30KQ4 102 aa9.54□□□□□ -0.88
CLN3-262ENST00000637699 NOTCH2NLQ7Z3S9 236 aa9.53□□□□□ -0.88
CLN3-262ENST00000637699 LINC00472Q9H8W2 130 aa9.53□□□□□ -0.88
CLN3-262ENST00000637699 LINC00846Q9NV44 126 aa9.53□□□□□ -0.88
CLN3-262ENST00000637699 BAALC-AS2P0C853 105 aa9.5□□□□□ -0.89
CLN3-262ENST00000637699 RBM3P98179 157 aaKnown RBP9.5□□□□□ -0.89
CLN3-262ENST00000637699 KRTAP19-6Q3LI70 58 aa9.48□□□□□ -0.89
CLN3-262ENST00000637699 VPS25Q9BRG1 176 aa9.48□□□□□ -0.89
CLN3-262ENST00000637699 ATXN8Q156A1 80 aa9.47□□□□□ -0.89
CLN3-262ENST00000637699 F8W1H4 67 aa9.46□□□□□ -0.9
CLN3-262ENST00000637699 DSCR8Q96T75 97 aa9.46□□□□□ -0.9
CLN3-262ENST00000637699 IGHV6-1A0A0B4J1U7 121 aa9.44□□□□□ -0.9
CLN3-262ENST00000637699 MTURNQ8N3F0 131 aa9.44□□□□□ -0.9
CLN3-262ENST00000637699 C9JAW5 83 aa9.41□□□□□ -0.9
CLN3-262ENST00000637699 A0A1B0GVX0 72 aa9.37□□□□□ -0.91
CLN3-262ENST00000637699 Q6ZQT0 140 aa9.37□□□□□ -0.91
CLN3-262ENST00000637699 PRO0461Q9UI25 63 aa9.37□□□□□ -0.91
CLN3-262ENST00000637699 C8orf87E5RJ46 101 aa9.33□□□□□ -0.92
CLN3-262ENST00000637699 JMJD7-PLA2G4BH0Y9G9 81 aa9.33□□□□□ -0.92
CLN3-262ENST00000637699 H3BT86 120 aa9.33□□□□□ -0.92
CLN3-262ENST00000637699 SPINK7P58062 85 aa9.33□□□□□ -0.92
CLN3-262ENST00000637699 LOC110117498A0A087WWA1 95 aa9.32□□□□□ -0.92
CLN3-262ENST00000637699 C21orf62-AS1Q17RA5 79 aa9.32□□□□□ -0.92
CLN3-262ENST00000637699 KRTAP6-3Q3LI67 103 aa9.32□□□□□ -0.92
CLN3-262ENST00000637699 A8MWP4 228 aa9.31□□□□□ -0.92
CLN3-262ENST00000637699 ZCCHC13Q8WW36 166 aaKnown RBP9.31□□□□□ -0.92
CLN3-262ENST00000637699 J3KT08 172 aa9.3□□□□□ -0.92
CLN3-262ENST00000637699 SMCPP49901 116 aaPredicted RBP9.3□□□□□ -0.92
CLN3-262ENST00000637699 Q8N9P0 234 aaPredicted RBP9.29□□□□□ -0.92
CLN3-262ENST00000637699 C14orf132Q9NPU4 83 aa9.29□□□□□ -0.92
CLN3-262ENST00000637699 K7ERU9 68 aa9.28□□□□□ -0.92
CLN3-262ENST00000637699 ETDBQ3ZM63 59 aa9.28□□□□□ -0.92
CLN3-262ENST00000637699 J3QR89 54 aa9.27□□□□□ -0.93
CLN3-262ENST00000637699 A0A1B0GW54 56 aa9.25□□□□□ -0.93
CLN3-262ENST00000637699 PDE6GP18545 87 aa9.25□□□□□ -0.93
CLN3-262ENST00000637699 NDUFB1O75438 58 aa9.23□□□□□ -0.93
CLN3-262ENST00000637699 WFDC13Q8IUB5 93 aa9.23□□□□□ -0.93
CLN3-262ENST00000637699 IGKV3D-7A0A0C4DH55 119 aa9.21□□□□□ -0.94
CLN3-262ENST00000637699 C8orf17Q9NRJ1 99 aa9.19□□□□□ -0.94
CLN3-262ENST00000637699 NREPQ16612 68 aa9.16□□□□□ -0.94
CLN3-262ENST00000637699 PRR15Q8IV56 129 aa9.14□□□□□ -0.95
CLN3-262ENST00000637699 NEBP20929 6669 aa9.14□□□□□ -0.95
CLN3-262ENST00000637699 Q6ZVQ6 151 aa9.11□□□□□ -0.95
CLN3-262ENST00000637699 MMP24-AS1A0A0U1RRL7 71 aa9.07□□□□□ -0.96
CLN3-262ENST00000637699 MUC12Q9UKN1 5478 aa9.05□□□□□ -0.96
CLN3-262ENST00000637699 FAM240AA0A1B0GVK7 77 aa9.05□□□□□ -0.96
CLN3-262ENST00000637699 K7EQZ3 153 aa9.05□□□□□ -0.96
CLN3-262ENST00000637699 ACYP1P07311 99 aa9.05□□□□□ -0.96
CLN3-262ENST00000637699 H1FX-AS1Q4G0G2 97 aa9.04□□□□□ -0.96
CLN3-262ENST00000637699 TMEM254Q8TBM7 123 aa9.04□□□□□ -0.96
CLN3-262ENST00000637699 MRPL34Q9BQ48 92 aaKnown RBP9.04□□□□□ -0.96
CLN3-262ENST00000637699 hDV103S1A0JD37 113 aa9□□□□□ -0.97
CLN3-262ENST00000637699 BPY2O14599 106 aa8.99□□□□□ -0.97
CLN3-262ENST00000637699 NDUFS5O43920 106 aa8.95□□□□□ -0.98
CLN3-262ENST00000637699 Q8N9L7 120 aa8.94□□□□□ -0.98
CLN3-262ENST00000637699 A6NN06 94 aa8.91□□□□□ -0.98
CLN3-262ENST00000637699 Q5W150 140 aa8.9□□□□□ -0.98
CLN3-262ENST00000637699 KRTAP20-1Q3LI63 56 aa8.87□□□□□ -0.99
CLN3-262ENST00000637699 CASC2Q6XLA1 102 aa8.87□□□□□ -0.99
CLN3-262ENST00000637699 IGKV2D-30A0A075B6S6 120 aa8.86□□□□□ -0.99
CLN3-262ENST00000637699 IGKV2-30P06310 120 aa8.86□□□□□ -0.99
CLN3-262ENST00000637699 LINC00643Q86TS7 51 aa8.86□□□□□ -0.99
CLN3-262ENST00000637699 HCG22E2RYF7 251 aa8.83□□□□□ -1
CLN3-262ENST00000637699 MT1BP07438 61 aa8.82□□□□□ -1
CLN3-262ENST00000637699 UBL5Q9BZL1 73 aa8.82□□□□□ -1
CLN3-262ENST00000637699 MT-ATP8P03928 68 aa8.81□□□□□ -1
CLN3-262ENST00000637699 C7orf65Q6ZTY9 151 aa8.81□□□□□ -1
CLN3-262ENST00000637699 FAM236AA0A1B0GUQ0 79 aa8.8□□□□□ -1
CLN3-262ENST00000637699 FAM236BA0A1B0GV22 79 aa8.8□□□□□ -1
CLN3-262ENST00000637699 SCGB1A1P11684 91 aa8.79□□□□□ -1
CLN3-262ENST00000637699 ATP5EP2Q5VTU8 51 aa8.78□□□□□ -1
CLN3-262ENST00000637699 Q5VV11 94 aa8.78□□□□□ -1
CLN3-262ENST00000637699 IMUPQ9GZP8 106 aa8.78□□□□□ -1
CLN3-262ENST00000637699 C5orf47Q569G3 176 aa8.76□□□□□ -1.01
CLN3-262ENST00000637699 MDN1Q9NU22 5596 aa8.75□□□□□ -1.01
CLN3-262ENST00000637699 CXCL6P80162 114 aa8.75□□□□□ -1.01
CLN3-262ENST00000637699 C4orf26Q17RF5 130 aa8.74□□□□□ -1.01
CLN3-262ENST00000637699 KMT2DO14686 5537 aa8.73□□□□□ -1.01
CLN3-262ENST00000637699 KRTAP10-5P60370 271 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms