RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 A0A1B0GU69 56 aa2.65□□□□□ -1.98
SCN1A-210ENST00000635776 KTN1-AS1Q86SY8 53 aa2.65□□□□□ -1.98
SCN1A-210ENST00000635776 Q75L30 129 aa2.65□□□□□ -1.99
SCN1A-210ENST00000635776 ATP11AUNQ6ZP68 121 aa2.64□□□□□ -1.99
SCN1A-210ENST00000635776 RBM12B-AS1Q9P1G2 102 aa2.64□□□□□ -1.99
SCN1A-210ENST00000635776 DMAC1Q96GE9 116 aa2.64□□□□□ -1.99
SCN1A-210ENST00000635776 Q5W150 140 aa2.64□□□□□ -1.99
SCN1A-210ENST00000635776 SVEP1Q4LDE5 3571 aa2.64□□□□□ -1.99
SCN1A-210ENST00000635776 HRES1P13985 223 aa2.63□□□□□ -1.99
SCN1A-210ENST00000635776 KRTAP13-2Q52LG2 175 aa2.63□□□□□ -1.99
SCN1A-210ENST00000635776 A0A087X002 238 aa2.63□□□□□ -1.99
SCN1A-210ENST00000635776 VWFP04275 2813 aa2.63□□□□□ -1.99
SCN1A-210ENST00000635776 CDC42SE1Q9NRR8 79 aa2.62□□□□□ -1.99
SCN1A-210ENST00000635776 PRR26Q8N8Z3 221 aa2.62□□□□□ -1.99
SCN1A-210ENST00000635776 TENM3Q9P273 2699 aa2.62□□□□□ -1.99
SCN1A-210ENST00000635776 UQCR11O14957 56 aa2.62□□□□□ -1.99
SCN1A-210ENST00000635776 SRRM2Q9UQ35 2752 aaKnown RBP2.62□□□□□ -1.99
SCN1A-210ENST00000635776 KRTAP1-4P0C5Y4 121 aa2.61□□□□□ -1.99
SCN1A-210ENST00000635776 Q5VV11 94 aa2.6□□□□□ -1.99
SCN1A-210ENST00000635776 SMR3BP02814 79 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-210ENST00000635776 NOTCH2NLQ7Z3S9 236 aa2.59□□□□□ -2
SCN1A-210ENST00000635776 HUWE1Q7Z6Z7 4374 aaKnown RBP2.58□□□□□ -2
SCN1A-210ENST00000635776 FBN1P35555 2871 aaKnown RBP2.58□□□□□ -2
SCN1A-210ENST00000635776 LCA10Q71F78 164 aa2.58□□□□□ -2
SCN1A-210ENST00000635776 CSMD1Q96PZ7 3565 aa2.58□□□□□ -2
SCN1A-210ENST00000635776 AKAP9Q99996 3911 aa2.58□□□□□ -2
SCN1A-210ENST00000635776 LUZP6Q538Z0 58 aa2.58□□□□□ -2
SCN1A-210ENST00000635776 CSMD2Q7Z408 3487 aa2.57□□□□□ -2
SCN1A-210ENST00000635776 C20orf166-AS1Q96NR2 134 aa2.57□□□□□ -2
SCN1A-210ENST00000635776 A8MUU9 505 aa2.56□□□□□ -2
SCN1A-210ENST00000635776 KRTAP13-3Q3SY46 172 aa2.56□□□□□ -2
SCN1A-210ENST00000635776 A6NN06 94 aa2.56□□□□□ -2
SCN1A-210ENST00000635776 MIR22HGQ0VDD5 57 aa2.56□□□□□ -2
SCN1A-210ENST00000635776 KRTAP16-1A8MUX0 517 aa2.56□□□□□ -2
SCN1A-210ENST00000635776 A0A1B0GVY2 172 aa2.55□□□□□ -2
SCN1A-210ENST00000635776 DNAH9Q9NYC9 4486 aa2.55□□□□□ -2
SCN1A-210ENST00000635776 PRAC1Q96KF2 57 aa2.55□□□□□ -2
SCN1A-210ENST00000635776 C9orf92A6NGG3 77 aa2.54□□□□□ -2
SCN1A-210ENST00000635776 SPINK7P58062 85 aa2.54□□□□□ -2
SCN1A-210ENST00000635776 Q5VSD8 79 aa2.54□□□□□ -2
SCN1A-210ENST00000635776 COX6B2Q6YFQ2 88 aa2.53□□□□□ -2
SCN1A-210ENST00000635776 NBPF19A0A087WUL8 3843 aa2.53□□□□□ -2
SCN1A-210ENST00000635776 LINC01554Q52M75 96 aa2.53□□□□□ -2.01
SCN1A-210ENST00000635776 ZFHX3Q15911 3703 aa2.51□□□□□ -2.01
SCN1A-210ENST00000635776 A0A0A0MQY5 61 aa2.51□□□□□ -2.01
SCN1A-210ENST00000635776 Q8N1X5 172 aa2.51□□□□□ -2.01
SCN1A-210ENST00000635776 SPATA8Q6RVD6 105 aa2.51□□□□□ -2.01
SCN1A-210ENST00000635776 ZNF469Q96JG9 3925 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-210ENST00000635776 RPL37P61927 97 aaKnown RBP2.5□□□□□ -2.01
SCN1A-210ENST00000635776 PLECQ15149 4684 aaKnown RBP2.5□□□□□ -2.01
SCN1A-210ENST00000635776 VPS13DQ5THJ4 4388 aa2.5□□□□□ -2.01
SCN1A-210ENST00000635776 A8MU10 97 aa2.49□□□□□ -2.01
SCN1A-210ENST00000635776 A0A1B0GU33 70 aa2.49□□□□□ -2.01
SCN1A-210ENST00000635776 VPS13CQ709C8 3753 aa2.49□□□□□ -2.01
SCN1A-210ENST00000635776 PKD1L1Q8TDX9 2849 aa2.49□□□□□ -2.01
SCN1A-210ENST00000635776 TRRAPQ9Y4A5 3859 aa2.49□□□□□ -2.01
SCN1A-210ENST00000635776 DNAH17Q9UFH2 4485 aa2.48□□□□□ -2.01
SCN1A-210ENST00000635776 SEC61BP60468 96 aaKnown RBP2.48□□□□□ -2.01
SCN1A-210ENST00000635776 DNAH3Q8TD57 4116 aa2.48□□□□□ -2.01
SCN1A-210ENST00000635776 KRTAP10-8P60410 259 aa2.48□□□□□ -2.01
SCN1A-210ENST00000635776 ALMS1Q8TCU4 4167 aa2.48□□□□□ -2.01
SCN1A-210ENST00000635776 CSAG1Q6PB30 78 aa2.48□□□□□ -2.01
SCN1A-210ENST00000635776 J3QL48 77 aa2.47□□□□□ -2.01
SCN1A-210ENST00000635776 DYNC2H1Q8NCM8 4307 aaKnown RBP2.47□□□□□ -2.01
SCN1A-210ENST00000635776 DNAH10Q8IVF4 4471 aa2.46□□□□□ -2.02
SCN1A-210ENST00000635776 ANK2Q01484 3957 aa2.46□□□□□ -2.02
SCN1A-210ENST00000635776 S4R3F8 94 aa2.45□□□□□ -2.02
SCN1A-210ENST00000635776 CUBNO60494 3623 aa2.45□□□□□ -2.02
SCN1A-210ENST00000635776 H1FX-AS1Q4G0G2 97 aa2.45□□□□□ -2.02
SCN1A-210ENST00000635776 CRIPTQ9P021 101 aa2.44□□□□□ -2.02
SCN1A-210ENST00000635776 DNAH1Q9P2D7 4330 aa2.44□□□□□ -2.02
SCN1A-210ENST00000635776 FBN3Q75N90 2809 aa2.44□□□□□ -2.02
SCN1A-210ENST00000635776 TPRXLQ17RH7 258 aa2.44□□□□□ -2.02
SCN1A-210ENST00000635776 KRTAP10-4P60372 401 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-210ENST00000635776 XP32Q5T750 250 aa2.42□□□□□ -2.02
SCN1A-210ENST00000635776 A0A0D9SG42 100 aa2.41□□□□□ -2.02
SCN1A-210ENST00000635776 DNAH11Q96DT5 4516 aa2.41□□□□□ -2.02
SCN1A-210ENST00000635776 MEGF8Q7Z7M0 2845 aa2.41□□□□□ -2.02
SCN1A-210ENST00000635776 TGP01266 2768 aa2.4□□□□□ -2.03
SCN1A-210ENST00000635776 DNAH8Q96JB1 4490 aa2.39□□□□□ -2.03
SCN1A-210ENST00000635776 DNHD1Q96M86 4753 aa2.39□□□□□ -2.03
SCN1A-210ENST00000635776 M0QZ58 72 aa2.39□□□□□ -2.03
SCN1A-210ENST00000635776 DNAH6Q9C0G6 4158 aa2.39□□□□□ -2.03
SCN1A-210ENST00000635776 TENM2Q9NT68 2774 aa2.39□□□□□ -2.03
SCN1A-210ENST00000635776 STARD9Q9P2P6 4700 aa2.39□□□□□ -2.03
SCN1A-210ENST00000635776 DNAH5Q8TE73 4624 aa2.38□□□□□ -2.03
SCN1A-210ENST00000635776 DNAH2Q9P225 4427 aa2.38□□□□□ -2.03
SCN1A-210ENST00000635776 DYNC1H1Q14204 4646 aaKnown RBP2.37□□□□□ -2.03
SCN1A-210ENST00000635776 SACSQ9NZJ4 4579 aa2.36□□□□□ -2.03
SCN1A-210ENST00000635776 NDUFAF8A1L188 74 aa2.36□□□□□ -2.03
SCN1A-210ENST00000635776 ROMO1P60602 79 aa2.35□□□□□ -2.03
SCN1A-210ENST00000635776 ADM2Q7Z4H4 148 aa2.35□□□□□ -2.03
SCN1A-210ENST00000635776 CMYA5Q8N3K9 4069 aa2.35□□□□□ -2.03
SCN1A-210ENST00000635776 H0YAA0 97 aa2.34□□□□□ -2.03
SCN1A-210ENST00000635776 KRTAP3-1Q9BYR8 98 aa2.33□□□□□ -2.04
SCN1A-210ENST00000635776 LRP1BQ9NZR2 4599 aa2.33□□□□□ -2.04
SCN1A-210ENST00000635776 R4GN34 69 aa2.33□□□□□ -2.04
SCN1A-210ENST00000635776 RYR2Q92736 4967 aa2.33□□□□□ -2.04
SCN1A-210ENST00000635776 MT1HL1P0DM35 61 aa2.32□□□□□ -2.04
SCN1A-210ENST00000635776 RYR1P21817 5038 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms