RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 WWC2-AS2Q96NR7 200 aa8.39□□□□□ -1.07
LDB3-209ENST00000623056 Q5W150 140 aa8.38□□□□□ -1.07
LDB3-209ENST00000623056 PRKDCP78527 4128 aaKnown RBP8.38□□□□□ -1.07
LDB3-209ENST00000623056 MEGF8Q7Z7M0 2845 aa8.38□□□□□ -1.07
LDB3-209ENST00000623056 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.37□□□□□ -1.07
LDB3-209ENST00000623056 KRTAP13-3Q3SY46 172 aa8.37□□□□□ -1.07
LDB3-209ENST00000623056 DNAH7Q8WXX0 4024 aa8.37□□□□□ -1.07
LDB3-209ENST00000623056 APLNQ9ULZ1 77 aa8.36□□□□□ -1.07
LDB3-209ENST00000623056 SPACA4Q8TDM5 124 aa8.36□□□□□ -1.07
LDB3-209ENST00000623056 ANAPC11Q9NYG5 84 aa8.36□□□□□ -1.07
LDB3-209ENST00000623056 ZNF706Q9Y5V0 76 aaPredicted RBP8.36□□□□□ -1.07
LDB3-209ENST00000623056 ALMS1Q8TCU4 4167 aa8.35□□□□□ -1.07
LDB3-209ENST00000623056 ACYP2P14621 99 aa8.33□□□□□ -1.08
LDB3-209ENST00000623056 PLECQ15149 4684 aaKnown RBP8.32□□□□□ -1.08
LDB3-209ENST00000623056 SPINK6Q6UWN8 80 aa8.31□□□□□ -1.08
LDB3-209ENST00000623056 LINC00313P59037 77 aa8.31□□□□□ -1.08
LDB3-209ENST00000623056 DYNC2H1Q8NCM8 4307 aaKnown RBP8.31□□□□□ -1.08
LDB3-209ENST00000623056 DNAH8Q96JB1 4490 aa8.3□□□□□ -1.08
LDB3-209ENST00000623056 Q6ZRN7 208 aaPredicted RBP8.3□□□□□ -1.08
LDB3-209ENST00000623056 NBDYA0A0U1RRE5 68 aa8.3□□□□□ -1.08
LDB3-209ENST00000623056 PSORS1C2Q9UIG4 136 aa8.3□□□□□ -1.08
LDB3-209ENST00000623056 FRAS1Q86XX4 4008 aa8.29□□□□□ -1.08
LDB3-209ENST00000623056 STARD9Q9P2P6 4700 aa8.28□□□□□ -1.08
LDB3-209ENST00000623056 IGLV5-52A0A0A0MRZ9 124 aa8.28□□□□□ -1.08
LDB3-209ENST00000623056 DMAC1Q96GE9 116 aa8.28□□□□□ -1.08
LDB3-209ENST00000623056 PRAC1Q96KF2 57 aa8.28□□□□□ -1.08
LDB3-209ENST00000623056 ZNF861PO60384 105 aa8.25□□□□□ -1.09
LDB3-209ENST00000623056 TGP01266 2768 aa8.23□□□□□ -1.09
LDB3-209ENST00000623056 A0A1B0GU69 56 aa8.23□□□□□ -1.09
LDB3-209ENST00000623056 ADM2Q7Z4H4 148 aa8.23□□□□□ -1.09
LDB3-209ENST00000623056 HECTD4Q9Y4D8 3996 aa8.22□□□□□ -1.09
LDB3-209ENST00000623056 PLA2G1BP04054 148 aaKnown RBP8.21□□□□□ -1.1
LDB3-209ENST00000623056 C8orf87E5RJ46 101 aa8.2□□□□□ -1.1
LDB3-209ENST00000623056 NUPR2A6NF83 97 aa8.2□□□□□ -1.1
LDB3-209ENST00000623056 SPATA8Q6RVD6 105 aa8.2□□□□□ -1.1
LDB3-209ENST00000623056 CIRBP-AS1Q8TBR5 109 aa8.2□□□□□ -1.1
LDB3-209ENST00000623056 A0A087WTM6 91 aa8.18□□□□□ -1.1
LDB3-209ENST00000623056 RETNLBQ9BQ08 111 aa8.18□□□□□ -1.1
LDB3-209ENST00000623056 FAM229AH3BQW9 127 aa8.16□□□□□ -1.1
LDB3-209ENST00000623056 RTL8CO15255 209 aa8.16□□□□□ -1.1
LDB3-209ENST00000623056 IGKV2-30P06310 120 aa8.15□□□□□ -1.1
LDB3-209ENST00000623056 VPS13DQ5THJ4 4388 aa8.14□□□□□ -1.11
LDB3-209ENST00000623056 MIR22HGQ0VDD5 57 aa8.14□□□□□ -1.11
LDB3-209ENST00000623056 DNAH17Q9UFH2 4485 aa8.12□□□□□ -1.11
LDB3-209ENST00000623056 UQCR11O14957 56 aa8.12□□□□□ -1.11
LDB3-209ENST00000623056 IGLV7-43P04211 117 aa8.11□□□□□ -1.11
LDB3-209ENST00000623056 LINC01554Q52M75 96 aa8.11□□□□□ -1.11
LDB3-209ENST00000623056 KMT2AQ03164 3969 aa8.1□□□□□ -1.11
LDB3-209ENST00000623056 SSBP3-AS1Q7Z2R9 100 aa8.09□□□□□ -1.11
LDB3-209ENST00000623056 DNAH2Q9P225 4427 aa8.06□□□□□ -1.12
LDB3-209ENST00000623056 KRTAP16-1A8MUX0 517 aa8.03□□□□□ -1.12
LDB3-209ENST00000623056 IGKV2D-30A0A075B6S6 120 aa8.02□□□□□ -1.13
LDB3-209ENST00000623056 LY6G6CO95867 125 aa7.98□□□□□ -1.13
LDB3-209ENST00000623056 CSAG1Q6PB30 78 aa7.98□□□□□ -1.13
LDB3-209ENST00000623056 KRTAP13-2Q52LG2 175 aa7.97□□□□□ -1.13
LDB3-209ENST00000623056 C4orf48Q5BLP8 95 aa7.97□□□□□ -1.13
LDB3-209ENST00000623056 DNAH11Q96DT5 4516 aa7.95□□□□□ -1.14
LDB3-209ENST00000623056 DNAH6Q9C0G6 4158 aa7.91□□□□□ -1.14
LDB3-209ENST00000623056 SPINK1P00995 79 aa7.91□□□□□ -1.14
LDB3-209ENST00000623056 C1orf134Q5TEV5 83 aa7.91□□□□□ -1.14
LDB3-209ENST00000623056 HYDINQ4G0P3 5121 aa7.91□□□□□ -1.14
LDB3-209ENST00000623056 DNAH5Q8TE73 4624 aa7.88□□□□□ -1.15
LDB3-209ENST00000623056 Q8N1X5 172 aa7.86□□□□□ -1.15
LDB3-209ENST00000623056 KMT2CQ8NEZ4 4911 aaKnown RBP7.84□□□□□ -1.15
LDB3-209ENST00000623056 H3BS24 57 aa7.81□□□□□ -1.16
LDB3-209ENST00000623056 LRP1BQ9NZR2 4599 aa7.81□□□□□ -1.16
LDB3-209ENST00000623056 H0YAA0 97 aa7.8□□□□□ -1.16
LDB3-209ENST00000623056 KRTAP1-4P0C5Y4 121 aa7.8□□□□□ -1.16
LDB3-209ENST00000623056 KRTAP10-2P60368 255 aa7.8□□□□□ -1.16
LDB3-209ENST00000623056 Q6ZSA8 131 aa7.8□□□□□ -1.16
LDB3-209ENST00000623056 FAT2Q9NYQ8 4349 aa7.79□□□□□ -1.16
LDB3-209ENST00000623056 A8MUU9 505 aa7.79□□□□□ -1.16
LDB3-209ENST00000623056 RYR3Q15413 4870 aa7.76□□□□□ -1.17
LDB3-209ENST00000623056 TYMSOSQ8TAI1 123 aa7.75□□□□□ -1.17
LDB3-209ENST00000623056 SACSQ9NZJ4 4579 aa7.75□□□□□ -1.17
LDB3-209ENST00000623056 PKD1P98161 4303 aa7.74□□□□□ -1.17
LDB3-209ENST00000623056 LINC00304Q8N9R0 145 aa7.73□□□□□ -1.17
LDB3-209ENST00000623056 KRTAP25-1Q3LHN0 102 aa7.72□□□□□ -1.17
LDB3-209ENST00000623056 KRTAP10-1P60331 282 aa7.7□□□□□ -1.18
LDB3-209ENST00000623056 VPS13BQ7Z7G8 4022 aa7.7□□□□□ -1.18
LDB3-209ENST00000623056 A0A1B0GU33 70 aa7.69□□□□□ -1.18
LDB3-209ENST00000623056 H1FX-AS1Q4G0G2 97 aa7.66□□□□□ -1.18
LDB3-209ENST00000623056 PKHD1P08F94 4074 aa7.65□□□□□ -1.19
LDB3-209ENST00000623056 KRTAP3-1Q9BYR8 98 aa7.64□□□□□ -1.19
LDB3-209ENST00000623056 RYR2Q92736 4967 aa7.62□□□□□ -1.19
LDB3-209ENST00000623056 ROMO1P60602 79 aa7.6□□□□□ -1.19
LDB3-209ENST00000623056 RPS29P62273 56 aaKnown RBP7.57□□□□□ -1.2
LDB3-209ENST00000623056 C9orf92A6NGG3 77 aa7.56□□□□□ -1.2
LDB3-209ENST00000623056 C20orf166-AS1Q96NR2 134 aa7.56□□□□□ -1.2
LDB3-209ENST00000623056 FLG2Q5D862 2391 aaPredicted RBP7.56□□□□□ -1.2
LDB3-209ENST00000623056 CRIPTQ9P021 101 aa7.54□□□□□ -1.2
LDB3-209ENST00000623056 DYNC1H1Q14204 4646 aaKnown RBP7.53□□□□□ -1.2
LDB3-209ENST00000623056 K7ERS5 55 aa7.51□□□□□ -1.21
LDB3-209ENST00000623056 COX6B2Q6YFQ2 88 aa7.51□□□□□ -1.21
LDB3-209ENST00000623056 EPPK1P58107 5090 aaKnown RBP7.5□□□□□ -1.21
LDB3-209ENST00000623056 BIRC6Q9NR09 4857 aa7.49□□□□□ -1.21
LDB3-209ENST00000623056 A0A1B0GVY2 172 aa7.45□□□□□ -1.22
LDB3-209ENST00000623056 SMR3BP02814 79 aaPredicted RBP7.43□□□□□ -1.22
LDB3-209ENST00000623056 APOBP04114 4563 aaKnown RBP7.43□□□□□ -1.22
LDB3-209ENST00000623056 FAT1Q14517 4588 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms